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Multimodal deep learning approaches for single-cell multi-omics data integration

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Article Multidisciplinary Sciences

Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples

Wenfei Jin et al.

NATURE (2015)

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Article Multidisciplinary Sciences

Single-cell chromatin accessibility reveals principles of regulatory variation

Jason D. Buenostro et al.

NATURE (2015)

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Article Biotechnology & Applied Microbiology

Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state

Assaf Rotem et al.

NATURE BIOTECHNOLOGY (2015)

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Article Biochemical Research Methods

Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing

Hongshan Guo et al.

NATURE PROTOCOLS (2015)

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Article Biochemistry & Molecular Biology

The Molecular Signatures Database Hallmark Gene Set Collection

Arthur Liberzon et al.

CELL SYSTEMS (2015)

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Article Biochemical Research Methods

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

Sebastien A. Smallwood et al.

NATURE METHODS (2014)

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Article Neurosciences

Hierarchical feature representation and multimodal fusion with deep learning for AD/MCI diagnosis

Heung-Il Suk et al.

NEUROIMAGE (2014)

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Review Computer Science, Artificial Intelligence

Representation Learning: A Review and New Perspectives

Yoshua Bengio et al.

IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2013)

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Article Biochemistry & Molecular Biology

Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome

Miao Yu et al.

CELL (2012)

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Article Multidisciplinary Sciences

Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution

Michael J. Booth et al.

SCIENCE (2012)

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Article Multidisciplinary Sciences

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation

Gabriella Ficz et al.

NATURE (2011)

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Review Biochemistry & Molecular Biology

The mammalian epigenome

Bradley E. Bernstein et al.

CELL (2007)

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Article Cell Biology

Multiplex-FISH (M-FISH): technique, developments and applications

L. Kearney

CYTOGENETIC AND GENOME RESEARCH (2006)

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