Related references
Note: Only part of the references are listed.Search and sequence analysis tools services from EMBL-EBI in 2022
Fabio Madeira et al.
NUCLEIC ACIDS RESEARCH (2022)
In honor of John Bissett: authoritative guidelines on molecular identification of Trichoderma
Feng Cai et al.
FUNGAL DIVERSITY (2021)
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
Mose Manni et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
Patricia P. Chan et al.
NUCLEIC ACIDS RESEARCH (2021)
Large-scale Trichoderma diversity was associated with ecosystem, climate and geographic location
Jindong Hu et al.
ENVIRONMENTAL MICROBIOLOGY (2020)
RepeatModeler2 for automated genomic discovery of transposable element families
Jullien M. Flynn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Highly accurate long-read HiFi sequencing data for five complex genomes
Ting Hon et al.
SCIENTIFIC DATA (2020)
Assembly of long, error-prone reads using repeat graphs
Mikhail Kolmogorov et al.
NATURE BIOTECHNOLOGY (2019)
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
Kai Blin et al.
NUCLEIC ACIDS RESEARCH (2019)
Evolution and comparative genomics of the most common Trichoderma species
Christian P. Kubicek et al.
BMC GENOMICS (2019)
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
Nicola De Maio et al.
MICROBIAL GENOMICS (2019)
Genome-based estimates of fungal rDNA copy number variation across phylogenetic scales and ecological lifestyles
Lotus A. Lofgren et al.
MOLECULAR ECOLOGY (2019)
Versatile genome assembly evaluation with QUAST-LG
Alla Mikheenko et al.
BIOINFORMATICS (2018)
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
Irina S. Druzhinina et al.
PLOS GENETICS (2018)
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
Aleksey V. Zimin et al.
GENOME RESEARCH (2017)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
Trichoderma for climate resilient agriculture
Prem Lal Kashyap et al.
WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2017)
HYBRIDSPADES: an algorithm for hybrid assembly of short and long reads
Dmitry Antipov et al.
BIOINFORMATICS (2016)
Systematics of the Trichoderma harzianum species complex and the re-identification of commercial biocontrol strains
Priscila Chaverri et al.
MYCOLOGIA (2015)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
Grapevine trunk diseases: complex and still poorly understood
C. Bertsch et al.
PLANT PATHOLOGY (2013)
β-Glucosidases from the Fungus Trichoderma: An Efficient Cellulase Machinery in Biotechnological Applications
Pragya Tiwari et al.
BIOMED RESEARCH INTERNATIONAL (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
Mario Stanke et al.
BIOINFORMATICS (2008)
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
Brandi L. Cantarel et al.
GENOME RESEARCH (2008)