Related references
Note: Only part of the references are listed.Two decades of Martini: Better beads, broader scope
Siewert J. Marrink et al.
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE (2023)
Pore Formation Mechanism of A-Beta Peptide on the Fluid Membrane: A Combined Coarse-Grained and All-Atomic Model
Yuxi Dai et al.
MOLECULES (2022)
Binding Models of Aβ42 Peptide with Membranes Explored by Molecular Simulations
Ke Wang et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2022)
Selecting Collective Variables and Free-Energy Methods for Peptide Translocation across Membranes
Ivo Kabelka et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2021)
Nanoscale Interplay of Membrane Composition and Amyloid Self-Assembly
Sneha Menon et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2020)
Modelling of interactions between Aβ(25-35) peptide and phospholipid bilayers: effects of cholesterol and lipid saturation
Inna Ermilova et al.
RSC ADVANCES (2020)
Aggregation kinetics of short peptides: All-atom and coarse-grained molecular dynamics study
Beata Szala et al.
BIOPHYSICAL CHEMISTRY (2019)
Effect of lipid saturation on amyloid-beta peptide partitioning and aggregation in neuronal membranes: molecular dynamics simulations
Nikolaos Ntarakas et al.
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (2019)
Unravelling the role of amino acid sequence order in the assembly and function of the amyloid-β core
Santu Bera et al.
CHEMICAL COMMUNICATIONS (2019)
Amyloid growth and membrane damage: Current themes and emerging perspectives from theory and experiments on Aβ and hIAPP
Michele F. M. Sciacca et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2018)
Antimicrobial action of the cationic peptide, chrysophsin-3: a coarse-grained molecular dynamics study
Andrea Catte et al.
SOFT MATTER (2018)
Membrane Binding and Pore Formation by a Cytotoxic Fragment of Amyloid β Peptide
Nabin Kandel et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2017)
High-Throughput Simulations Reveal Membrane-Mediated Effects of Alcohols on MscL Gating
Manuel N. Melo et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2017)
Membrane-Accelerated Amyloid-beta Aggregation and Formation of Cross-beta Sheets
Adree Khondker et al.
MEMBRANES (2017)
Differential Membrane Toxicity of Amyloid-β Fragments by Pore Forming Mechanisms
Christian Peters et al.
JOURNAL OF ALZHEIMERS DISEASE (2016)
Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations
Tsjerk A. Wassenaar et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
Disordered amyloidogenic peptides may insert into the membrane and assemble into common cyclic structural motifs
Hyunbum Jang et al.
CHEMICAL SOCIETY REVIEWS (2014)
Differences between amyloid-beta aggregation in solution and on the membrane: insights into elucidation of the mechanistic details of Alzheimer's disease
Samuel A. Kotler et al.
CHEMICAL SOCIETY REVIEWS (2014)
Simulations of Protein Aggregation: Insights from Atomistic and Coarse-Grained Models
Alex Morriss-Andrews et al.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2014)
The amyloid state and its association with protein misfolding diseases
Tuomas P. J. Knowles et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2014)
Molecular understanding of a potential functional link between antimicrobial and amyloid peptides
Mingzhen Zhang et al.
SOFT MATTER (2014)
The amyloid-cell membrane system. The interplay between the biophysical features of oligomers/fibrils and cell membrane defines amyloid toxicity
Cristina Cecchi et al.
BIOPHYSICAL CHEMISTRY (2013)
Embedding Aβ42 in Heterogeneous Membranes Depends on Cholesterol Asymmetries
Nicoletta Liguori et al.
BIOPHYSICAL JOURNAL (2013)
Free Energy Barrier for Melittin Reorientation from a Membrane-Bound State to a Transmembrane State
Sheeba J. Irudayam et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2013)
An Extension and Further Validation of an All-Atomistic Force Field for Biological Membranes
Joakim P. M. Jambeck et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Derivation and Systematic Validation of a Refined All-Atom Force Field for Phosphatidylcholine Lipids
Joakim P. M. Jambeck et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
Software News and Updates MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations
Naveen Michaud-Agrawal et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2011)
Interactions of Aβ25-35 β-Barrel-like Oligomers with Anionic Lipid Bilayer and Resulting Membrane Leakage: An All-Atom Molecular Dynamics Study
Zhongwen Chang et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2011)
A Study of the α-Helical Intermediate Preceding the Aggregation of the Amino-Terminal Fragment of the β Amyloid Peptide (Aβ1-28)
Ana V. Rojas et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2011)
g_wham-A Free Weighted Histogram Analysis Implementation Including Robust Error and Autocorrelation Estimates
Jochen S. Hub et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2010)
Interactions of Phospholipid Bilayers with Several Classes of Amphiphilic α-Helical Peptides: Insights from Coarse-Grained Molecular Dynamics Simulations
Paraskevi Gkeka et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2010)
Effect of amyloid beta peptides Aβ1-28 and Aβ25-40 on model lipid membranes
Maksim Ionov et al.
JOURNAL OF THERMAL ANALYSIS AND CALORIMETRY (2010)
K3 Fragment of Amyloidogenic β2-Microglobulin Forms Ion Channels: Implication for Dialysis Related Amyloidosis
Mirela Mustata et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)
Energy landscapes of the monomer and dimer of the Alzheimer's peptide Aβ(1-28)
Xiao Dong et al.
JOURNAL OF CHEMICAL PHYSICS (2008)
The MARTINI coarse-grained force field: Extension to proteins
Luca Monticelli et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
GROMACS: Fast, flexible, and free
D Van der Spoel et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)
Natural oligomers of the amyloid-protein specifically disrupt cognitive function
JP Cleary et al.
NATURE NEUROSCIENCE (2005)
Development and testing of a general amber force field
JM Wang et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Conformational restriction via cyclization in β-amyloid peptide Aβ(1-28) leads to an inhibitor of Aβ(1-28) amyloidogenesis and cytotoxicity
A Kapurniotu et al.
CHEMISTRY & BIOLOGY (2003)