Related references
Note: Only part of the references are listed.Thermal stress triggers productive viral infection of a key coral reef symbiont
Carsten G. B. Grupstra et al.
ISME JOURNAL (2022)
Paleovirology of the DNA viruses of eukaryotes
Jose Gabriel Nino Barreat et al.
TRENDS IN MICROBIOLOGY (2022)
Eighteen Coral Genomes Reveal the Evolutionary Origin of Acropora Strategies to Accommodate Environmental Changes
Chuya Shinzato et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Unlocking the phylogenetic diversity, primary habitats, and abundances of free-living Symbiodiniaceae on a coral reef
Lisa Fujise et al.
MOLECULAR ECOLOGY (2021)
Virus-like insertions with sequence signatures similar to those of endogenous nonretroviral RNA viruses in the human genome
Shohei Kojima et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium
Raul A. Gonzalez-Pech et al.
BMC BIOLOGY (2021)
Genetic and spatial organization of the unusual chromosomes of the dinoflagellate Symbiodinium microadriaticum
Ankita Nand et al.
NATURE GENETICS (2021)
Revisiting the rules of life for viruses of microorganisms
Adrienne M. S. Correa et al.
NATURE REVIEWS MICROBIOLOGY (2021)
100-My history of bornavirus infections hidden in vertebrate genomes
Junna Kawasaki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Fish predation on corals promotes the dispersal of coral symbionts
Carsten G. B. Grupstra et al.
ANIMAL MICROBIOME (2021)
Symbiodiniaceae-bacteria interactions: rethinking metabolite exchange in reef-building corals as multi-partner metabolic networks
Jennifer L. Matthews et al.
ENVIRONMENTAL MICROBIOLOGY (2020)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions
Timothy G. Stephens et al.
BMC BIOLOGY (2020)
Endosymbiont diversity and community structure in Porites lutea from Southeast Asia are driven by a suite of environmental variables
Yuen Ting Rachel Tan et al.
SYMBIOSIS (2020)
The Potential Role of Endogenous Viral Elements in the Evolution of Bats as Reservoirs for Zoonotic Viruses
Emilia C. Skirmuntt et al.
ANNUAL REVIEW OF VIROLOGY, VOL 7, 2020 (2020)
Non-retroviral Endogenous Viral Element Limits Cognate Virus Replication in Aedes aegypti Ovaries
Yasutsugu Suzuki et al.
CURRENT BIOLOGY (2020)
Six reference-quality genomes reveal evolution of bat adaptations
David Jebb et al.
NATURE (2020)
The Genome of the Cauliflower Coral Pocillopora verrucosa
Carol Buitrago-Lopez et al.
GENOME BIOLOGY AND EVOLUTION (2020)
Coral Bleaching Phenotypes Associated With Differential Abundances of Nucleocytoplasmic Large DNA Viruses
Adriana Messyasz et al.
FRONTIERS IN MARINE SCIENCE (2020)
Widespread endogenization of giant viruses shapes genomes of green algae
Mohammad Moniruzzaman et al.
NATURE (2020)
SymPortal: A novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling
Benjamin C. C. Hume et al.
MOLECULAR ECOLOGY RESOURCES (2019)
Genomic Variants Among Threatened Acropora Corals
Sheila. A. Kitchen et al.
G3-GENES GENOMES GENETICS (2019)
Origins and evolutionary consequences of ancient endogenous retroviruses
Welkin E. Johnson
NATURE REVIEWS MICROBIOLOGY (2019)
Assessing the Diversity of Endogenous Viruses Throughout Ant Genomes
Peter J. Flynn et al.
FRONTIERS IN MICROBIOLOGY (2019)
A Laterally Transferred Viral Gene Modifies Aphid Wing Plasticity
Benjamin J. Parker et al.
CURRENT BIOLOGY (2019)
Draft Genome of the Rice Coral Montipora capitata Obtained from Linked-Read Sequencing
Martin Helmkampf et al.
GENOME BIOLOGY AND EVOLUTION (2019)
A genomic view of the reef-building coral Porites lutea and its microbial symbionts
Steven J. Robbins et al.
NATURE MICROBIOLOGY (2019)
Diversity of Symbiodiniaceae in 15 Coral Species From the Southern South China Sea: Potential Relationship With Coral Thermal Adaptability
Zhenjun Qin et al.
FRONTIERS IN MICROBIOLOGY (2019)
Endogenous Viral Elements Are Widespread in Arthropod Genomes and Commonly Give Rise to PIWI-Interacting RNAs
Anneliek M. ter Horst et al.
JOURNAL OF VIROLOGY (2019)
Virus Latency and the Impact on Plants
Hideki Takahashi et al.
FRONTIERS IN MICROBIOLOGY (2019)
The Widespread Occurrence and Potential Biological Roles of Endogenous Viral Elements in Insect Genomes
Carol D. Blair et al.
CURRENT ISSUES IN MOLECULAR BIOLOGY (2019)
UFBoot2: Improving the Ultrafast Bootstrap Approximation
Diep Thi Hoang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes
Eiichi Shoguchi et al.
BMC GENOMICS (2018)
Dinoflagellates, a Unique Lineage for Retrogene Research
Bo Song et al.
FRONTIERS IN MICROBIOLOGY (2018)
Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts
Todd C. LaJeunesse et al.
CURRENT BIOLOGY (2018)
Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution
R. Cunning et al.
SCIENTIFIC REPORTS (2018)
Bleaching causes loss of disease resistance within the threatened coral species Acropora cervicornis
Erinn M. Muller et al.
ELIFE (2018)
Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages
Hua Ying et al.
GENOME BIOLOGY (2018)
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis
Huanle Liu et al.
COMMUNICATIONS BIOLOGY (2018)
Evidence for a role of viruses in the thermal sensitivity of coral photosymbionts
Rachel Ashley Levin et al.
ISME JOURNAL (2017)
Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics
Jan Janouskovec et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Virus-host interactions and their roles in coral reef health and disease
Rebecca Vega Thurber et al.
NATURE REVIEWS MICROBIOLOGY (2017)
A Glimpse of Nucleo-Cytoplasmic Large DNA Virus Biodiversity through the Eukaryotic GenomicsWindow
Lucie Gallot-Lavallee et al.
VIRUSES-BASEL (2017)
Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals
Christian R. Voolstra et al.
SCIENTIFIC REPORTS (2017)
A PCR-Based Assay Targeting the Major Capsid Protein Gene of a Dinorna-Like ssRNA Virus That Infects Coral Photosymbionts
Jose Montalvo-Proano et al.
FRONTIERS IN MICROBIOLOGY (2017)
BBMerge - Accurate paired shotgun read merging via overlap
Brian Bushnell et al.
PLOS ONE (2017)
Changes in the Number of Symbionts and Symbiodinium Cell Pigmentation Modulate Differentially Coral Light Absorption and Photosynthetic Performance
Tim Scheufen et al.
FRONTIERS IN MARINE SCIENCE (2017)
Ecological and Evolutionary Benefits of Temperate Phage: What Does or Doesn't Kill You Makes You Stronger
Ellie Harrison et al.
BIOESSAYS (2017)
The Diversity, Structure, and Function of Heritable Adaptive Immunity Sequences in the Aedes aegypti Genome
Zachary J. Whitfield et al.
CURRENT BIOLOGY (2017)
Comparative genomics shows that viral integrations are abundant and express piRNAs in the arboviral vectors Aedes aegypti and Aedes albopictus
Umberto Palatini et al.
BMC GENOMICS (2017)
The role of human endogenous retroviruses in brain development and function
Kristien Mortelmans et al.
APMIS (2016)
How retrotransposons shape genome regulation
Paolo Mita et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2016)
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Retrotransposons as regulators of gene expression
Reyad A. Elbarbary et al.
SCIENCE (2016)
IRESPred: Web Server for Prediction of Cellular and Viral Internal Ribosome Entry Site (IRES)
Pandurang Kolekar et al.
SCIENTIFIC REPORTS (2016)
Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle
M. Aranda et al.
SCIENTIFIC REPORTS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis
Senjie Lin et al.
SCIENCE (2015)
Structure and function of the global ocean microbiome
Shinichi Sunagawa et al.
SCIENCE (2015)
Endogenous viruses: Connecting recent and ancient viral evolution
Pakorn Aiewsakun et al.
VIROLOGY (2015)
Endogenous Retroviruses in the Genomics Era
Welkin E. Johnson
ANNUAL REVIEW OF VIROLOGY, VOL 2 (2015)
Open science resources for the discovery and analysis of Tara Oceans data
Stephane Pesant et al.
SCIENTIFIC DATA (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
The ReFuGe 2020 Consortium-using omics approaches to explore the adaptability and resilience of coral holobionts to environmental change
Christian R. Voolstra et al.
FRONTIERS IN MARINE SCIENCE (2015)
Quantification of virus-like particles suggests viral infection in corals affected by Porites tissue loss
Scott A. Lawrence et al.
CORAL REEFS (2014)
Generating viral rnetagenomes from the coral holobiont
Karen D. Weynberg et al.
FRONTIERS IN MICROBIOLOGY (2014)
Evolution of endogenous non-retroviral genes integrated into plant genomes
Hyosub Chu et al.
CURRENT PLANT BIOLOGY (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
Sebastian Baumgarten et al.
BMC GENOMICS (2013)
Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure
Eiichi Shoguchi et al.
CURRENT BIOLOGY (2013)
Unique nucleocytoplasmic dsDNA and +ssRNA viruses are associated with the dinoflagellate endosymbionts of corals
Adrienne M. S. Correa et al.
ISME JOURNAL (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Paleovirology: inferring viral evolution from host genome sequence data
Aris Katzourakis
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Proof that Dinoflagellate Spliced Leader (DinoSL) is a Useful Hook for Fishing Dinoflagellate Transcripts from Mixed Microbial Samples: Symbiodinium kawagutii as a Case Study
Huan Zhang et al.
PROTIST (2013)
Endogenous Lentiviruses in the Ferret Genome
Jie Cui et al.
JOURNAL OF VIROLOGY (2012)
Phylogeny, integration and expression of sigma virus-like genes in Drosophila
Maithew J. Ballinger et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)
Endogenous viruses: insights into viral evolution and impact on host biology
Cedric Feschotte et al.
NATURE REVIEWS GENETICS (2012)
Studies of endogenous retroviruses reveal a continuing evolutionary saga
Jonathan P. Stoye
NATURE REVIEWS MICROBIOLOGY (2012)
Paleovirology and virally derived immunity
Amr Aswad et al.
TRENDS IN ECOLOGY & EVOLUTION (2012)
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
Carson Holt et al.
BMC BIOINFORMATICS (2011)
The Evolution of Endogenous Viral Elements
Edward C. Holmes
CELL HOST & MICROBE (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Fabian Sievers et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
The good viruses: viral mutualistic symbioses
Marilyn J. Roossinck
NATURE REVIEWS MICROBIOLOGY (2011)
Widespread Endogenization of Genome Sequences of Non-Retroviral RNA Viruses into Plant Genomes
Sotaro Chiba et al.
PLOS PATHOGENS (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Sequences from Ancestral Single-Stranded DNA Viruses in Vertebrate Genomes: the Parvoviridae and Circoviridae Are More than 40 to 50 Million Years Old
Vladimir A. Belyi et al.
JOURNAL OF VIROLOGY (2010)
Endogenous non-retroviral RNA virus elements in mammalian genomes
Masayuki Horie et al.
NATURE (2010)
Coral-virus interactions: A double-edged sword?
Madeleine J. H. van Oppen et al.
SYMBIOSIS (2010)
Genomic Fossils Calibrate the Long-Term Evolution of Hepadnaviruses
Clement Gilbert et al.
PLOS BIOLOGY (2010)
Endless Forms Most Viral
Welkin E. Johnson
PLOS GENETICS (2010)
Endogenous Viral Elements in Animal Genomes
Aris Katzourakis et al.
PLOS GENETICS (2010)
被撤回的出版物: Identification of an RNA-dependent RNA polymerase in Drosophila involved in RNAi and transposon suppression (Retracted article. See vol. 108, pg. 15010, 2011)
Concetta Lipardi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Macroevolution of Complex Retroviruses
Aris Katzourakis et al.
SCIENCE (2009)
Identification of a RELIK orthologue in the European hare (Lepus europaeus) reveals a minimum age of 12 million years for the lagomorph lentiviruses
Z. Keckesova et al.
VIROLOGY (2009)
Effects of Retroviruses on Host Genome Function
Patric Jern et al.
ANNUAL REVIEW OF GENETICS (2008)
Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef)
Raechel A. Littman et al.
JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY (2008)
Changes in viral protein function that accompany retroviral endogenization
Nidia M. Oliveira et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Spliced leader RNA-Mediated trans-splicing in a dinoflagellate, Karenia brevis
Kristy B. Lidie et al.
JOURNAL OF EUKARYOTIC MICROBIOLOGY (2007)
Spliced leader RNA trans-splicing in dinoflagellates
Huan Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
AUGUSTUS:: ab initio prediction of alternative transcripts
Mario Stanke et al.
NUCLEIC ACIDS RESEARCH (2006)
Comparison of genome sequences of single-stranded RNA viruses infecting the bivalve-killing dinoflagellate Heterocapsa circularisquama
K Nagasaki et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Multispecies microbial mutualisms on coral reefs: The host as a habitat
N Knowlton et al.
AMERICAN NATURALIST (2003)
Mfold web server for nucleic acid folding and hybridization prediction
M Zuker
NUCLEIC ACIDS RESEARCH (2003)
Temperature induction of viruses in symbiotic dinoflagellates
WH Wilson et al.
AQUATIC MICROBIAL ECOLOGY (2001)