4.7 Article

Promoter Variation of the Key Apple Fruit Texture Related Gene MdPG1 and the Upstream Regulation Analysis

Related references

Note: Only part of the references are listed.
Article Biology

A long noncoding RNA HILinc1 enhances pear thermotolerance by stabilizing PbHILT1 transcripts through complementary base pairing

Yi Zhang et al.

Summary: Heat stress induces upregulation of long non-coding RNA HILinc1 in pear cultivar, which binds to and stabilizes PbHILT1 mRNA, encoding a protein that interacts with heat shock factor A1b, thus improving thermotolerance.

COMMUNICATIONS BIOLOGY (2022)

Article Biochemistry & Molecular Biology

PLncDB V2.0: a comprehensive encyclopedia of plant long noncoding RNAs

Jingjing Jin et al.

Summary: The upgrade of the Plant Long noncoding RNA Database (PLncDB) provides comprehensive information on 1,246,372 lncRNAs from 80 plant species, incorporating data from other resources. Users can visualize expression patterns and epigenetic signals using various tools, and explore targets and regulatory networks of lncRNAs. PLncDB V2.0 serves as a valuable resource for the plant lncRNA community and data-driven research.

NUCLEIC ACIDS RESEARCH (2021)

Article Multidisciplinary Sciences

Integrated analysis of lncRNA and mRNA transcriptomes reveals the potential regulatory role of lncRNA in kiwifruit ripening and softening

Yiting Chen et al.

Summary: This study identified a large number of differentially expressed genes and long noncoding RNAs in ABA and RT-treated fruits compared to the control group CK. These genes are involved in various pathways related to fruit ripening, suggesting the involvement of long noncoding RNAs in regulating kiwifruit ripening.

SCIENTIFIC REPORTS (2021)

Article Plant Sciences

The AaCBF4-AaBAM3.1 module enhances freezing tolerance of kiwifruit (Actinidia arguta)

Shihang Sun et al.

Summary: The study demonstrates that AaBAM gene plays a crucial role in freezing tolerance of kiwifruit, with its overexpression enhancing the tolerance. Additionally, AaCBF4 is identified as a potential upstream transcription factor regulating the expression of AaBAM3.1.

HORTICULTURE RESEARCH (2021)

Article Biochemistry & Molecular Biology

The long noncoding RNA MdLNC499 bridges MdWRKY1 and MdERF109 function to regulate early-stage light-induced anthocyanin accumulation in apple fruit

Huaying Ma et al.

Summary: In apple fruit, ERF109 protein is involved in light-induced anthocyanin biosynthesis by directly binding to anthocyanin-related gene promoters to promote coloration. Additionally, a long noncoding RNA MdLNC499 was found to induce expression of MdERF109, regulated by a transcription factor MdWRKY1.

PLANT CELL (2021)

Article Plant Sciences

ERF4affects fruit firmness through TPL4 by reducing ethylene production

Yanan Hu et al.

PLANT JOURNAL (2020)

Review Plant Sciences

CaMV35S promoter - A plant biology and biotechnology workhorse in the era of synthetic biology

Stephanie C. Amack et al.

CURRENT PLANT BIOLOGY (2020)

Article Biotechnology & Applied Microbiology

PbrmiR397a regulates lignification during stone cell development in pear fruit

Cheng Xue et al.

PLANT BIOTECHNOLOGY JOURNAL (2019)

Article Multidisciplinary Sciences

A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour

Liyi Zhang et al.

NATURE COMMUNICATIONS (2019)

Article Biochemistry & Molecular Biology

15 years of GDR: New data and functionality in the Genome Database for Rosaceae

Sook Jung et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Biochemistry & Molecular Biology

Functional Classification and Experimental Dissection of Long Noncoding RNAs

Florian Kopp et al.

Review Plant Sciences

Fruit Softening: Revisiting the Role of Pectin

Duoduo Wang et al.

TRENDS IN PLANT SCIENCE (2018)

Article Multidisciplinary Sciences

Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA

Xinyue Zhao et al.

NATURE COMMUNICATIONS (2018)

Article Biochemistry & Molecular Biology

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

Yu-Jian Kang et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Multidisciplinary Sciences

Local regulation of gene expression by lncRNA promoters, transcription and splicing

Jesse M. Engreitz et al.

NATURE (2016)

Review Biotechnology & Applied Microbiology

Cis-regulatory elements used to control gene expression in plants

Roza Bilas et al.

PLANT CELL TISSUE AND ORGAN CULTURE (2016)

Article Multidisciplinary Sciences

Control of seed dormancy in Arabidopsis by a cis-acting noncoding antisense transcript

Halina Fedak et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice

Yourong Fan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Plant Sciences

Battles and hijacks: noncoding transcription in plants

Federico Ariel et al.

TRENDS IN PLANT SCIENCE (2015)

Review Plant Sciences

Diverse roles of jasmonates and ethylene in abiotic stress tolerance

Kemal Kazan

TRENDS IN PLANT SCIENCE (2015)

Article Biochemistry & Molecular Biology

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

Matthew T. Weirauch et al.

Article Cell Biology

Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis

Florian Bardou et al.

DEVELOPMENTAL CELL (2014)

Review Plant Sciences

Homogalacturonan-modifying enzymes: structure, expression, and roles in plants

Fabien Senechal et al.

JOURNAL OF EXPERIMENTAL BOTANY (2014)

Article Multidisciplinary Sciences

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light

Yuqiu Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biology

Considerations when investigating IncRNA function in vivo

Andrew R. Bassett et al.

ELIFE (2014)

Editorial Material Multidisciplinary Sciences

Long Noncoding RNAs Xist in Three Dimensions

Andrew Dimond et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

Jihua Ding et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

Jae Bok Heo et al.

SCIENCE (2011)

Article Biochemical Research Methods

Education resources of the National Center for Biotechnology Information

Peter S. Cooper et al.

BRIEFINGS IN BIOINFORMATICS (2010)

Article Multidisciplinary Sciences

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

Szymon Swiezewski et al.

NATURE (2009)

Article Plant Sciences

BcMF11, a putative pollen-specific non-coding RNA from Brassica campestris ssp chinensis

Jiang-Hua Song et al.

JOURNAL OF PLANT PHYSIOLOGY (2007)

Article Genetics & Heredity

Target mimicry provides a new mechanism for regulation of microRNA activity

Jose Manuel Franco-Zorrilla et al.

NATURE GENETICS (2007)

Review Biochemistry & Molecular Biology

Cell wall metabolism in fruit softening and quality and its manipulation in transgenic plants

DA Brummell et al.

PLANT MOLECULAR BIOLOGY (2001)