4.7 Article

Mining Salt Tolerance SNP Loci and Prediction of Candidate Genes in the Rice Bud Stage by Genome-Wide Association Analysis

Related references

Note: Only part of the references are listed.
Review Environmental Sciences

Salty freshwater macrophytes: the effects of salinization in freshwaters upon non-halophyte aquatic plants

Mauricio Hoffmann Moreira et al.

Summary: Salinization is a global threat to aquatic ecosystems, and the impact of increased salinity on freshwater macrophytes is not well understood. This review provides a comprehensive overview of the tolerance of widespread non-halophyte macrophytes to salinity increase in freshwater. It reveals that these macrophytes display efficient tolerance to salinity levels between 5 and 10 g L-1, with only a few species tolerating higher salinities. Salinity stress can negatively affect the physiology and diversity of freshwater macrophytes, leading to long-term changes in ecosystems.

SCIENCE OF THE TOTAL ENVIRONMENT (2023)

Article Genetics & Heredity

Identification of Salt Tolerance Related Candidate Genes in 'Sea Rice 86' at the Seedling and Reproductive Stages Using QTL-Seq and BSA-Seq

Qinmei Gao et al.

Summary: Salt-tolerant high-yielding rice cultivars with stable cell membrane, chlorophyll and high antioxidant enzyme activity have been developed through QTL identification and BSA analysis. The expression of candidate genes LOC_Os04g03320.1 and BGIOSGA019540 were found to be critical for the salt tolerance of SR86. These QTLs have important theoretical and practical significance for salt tolerance breeding in rice.

GENES (2023)

Article Biochemistry & Molecular Biology

Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis

Hua Wei et al.

Summary: In rice, OsPRR73 enhances salt tolerance by transcriptionally repressing OsHKT2;1 to reduce cellular Na+ accumulation. This study provides a new molecular link between clock components and salt stress tolerance in rice.

EMBO JOURNAL (2021)

Article Biochemistry & Molecular Biology

Comparative Transcriptome Analysis of Rice Resistant and Susceptible Genotypes to Xanthomonas oryzae pv. oryzae Identifies Novel Genes to Control Bacterial Leaf Blight

Rahul Bakade et al.

Summary: The study identified several genes associated with improved plant immunity against Xanthomonas oryzae pv. oryzae (Xoo) in resistant rice genotype BPT-5204 compared to susceptible genotype TN-1. The research also revealed the genetic pathways and gene networks involved in resistance mechanisms, highlighting the roles of various genes and associated plant immunity pathways in developing resistant rice cultivars.

MOLECULAR BIOTECHNOLOGY (2021)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

Ivica Letunic et al.

Summary: The Interactive Tree Of Life is an online tool for displaying, manipulating, and annotating phylogenetic and other trees. The latest version 5 introduces a new tree display engine and several new features, such as a new dataset type and expanded annotation options. Users can now also manually annotate trees by hand, providing more flexibility and control.

NUCLEIC ACIDS RESEARCH (2021)

Article Soil Science

Impact of saline soil improvement measures on salt content in the abandonment-reclamation process

Xiaoyan Shi et al.

Summary: The study found that different saline soil improvement treatments have an impact on the distribution of soil salt content, and engineering improvement measures can inhibit salt migration to a certain degree, providing a theoretical basis for soil improvement and utilization in arid areas.

SOIL & TILLAGE RESEARCH (2021)

Article Agronomy

OsbZIP72 Is Involved in Transcriptional Gene-Regulation Pathway of Abscisic Acid Signal Transduction by Activating Rice High-Affinity Potassium Transporter OsHKT1;1

WANG Baoxiang et al.

Summary: Our study used CRISPR-Cas9 knock-out and overexpressing OsbZIP72 transgenic rice plants to investigate the role and molecular mechanism of OsbZIP72 gene in stress tolerance. We found that OsbZIP72 acts as a transcriptional modulator, directly regulating the expression of OsHKT1;1 in response to environmental stress through an ABA-dependent regulatory pathway, indicating its crucial role in the ABA-mediated salt and drought tolerance pathway in rice.

RICE SCIENCE (2021)

Review Biochemistry & Molecular Biology

Advances and Challenges in the Breeding of Salt-Tolerant Rice

Hua Qin et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Article Plant Sciences

The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice

Yanru Cui et al.

FRONTIERS IN PLANT SCIENCE (2018)

Article Plant Sciences

Salt- and ABA-inducible OsGASR1 is involved in salt tolerance

Sang-Choon Lee et al.

JOURNAL OF PLANT BIOLOGY (2015)

Article Biochemistry & Molecular Biology

OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice

Citao Liu et al.

PLANT MOLECULAR BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice

Takayuki Asano et al.

PLANT MOLECULAR BIOLOGY (2011)

Article Biochemistry & Molecular Biology

The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice

Hironori Takasaki et al.

MOLECULAR GENETICS AND GENOMICS (2010)

Article Biochemistry & Molecular Biology

Mapping of QTLs Controlling Na+, K+ and Cl- Ion Concentrations in Salt Tolerant Indica Rice Variety CSR27

M. H. M. Ammar et al.

JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY (2009)

Article Biochemistry & Molecular Biology

Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice

Honghong Hu et al.

PLANT MOLECULAR BIOLOGY (2008)

Article Genetics & Heredity

The extent of linkage disequilibrium in rice (Oryza sativa L.)

Kristie A. Mather et al.

GENETICS (2007)

Article Biochemical Research Methods

TASSEL: software for association mapping of complex traits in diverse samples

Peter J. Bradbury et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Salt-dependent regulation of chloride channel transcripts in rice

C Diédhiou et al.

PLANT SCIENCE (2006)

Article Genetics & Heredity

A rice quantitative trait locus for salt tolerance encodes a sodium transporter

ZH Ren et al.

NATURE GENETICS (2005)

Article Biochemistry & Molecular Biology

Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study

G Evanno et al.

MOLECULAR ECOLOGY (2005)

Article Agronomy

QTLs for Na+ and K+ uptake of the shoots and roots controlling rice salt tolerance

HX Lin et al.

THEORETICAL AND APPLIED GENETICS (2004)

Article Genetics & Heredity

Association mapping in structured populations

JK Pritchard et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2000)

Article Biochemistry & Molecular Biology

AtZFP1, encoding Arabidopsis thaliana C2H2 zinc-finger protein 1, is expressed downstream of photomorphogenic activation

HE Chrispeels et al.

PLANT MOLECULAR BIOLOGY (2000)