Related references
Note: Only part of the references are listed.A robust approach to estimate relative phytoplankton cell abundances from metagenomes
Juan Jose Pierella Karlusich et al.
MOLECULAR ECOLOGY RESOURCES (2023)
Encapsulated in sediments: eDNA deciphers the ecosystem history of one of the most polluted European marine sites
Ines Barrenechea Angeles et al.
ENVIRONMENT INTERNATIONAL (2023)
Not dead yet: Diatom resting spores can survive in nature for several millennia
Anushree Sanyal et al.
AMERICAN JOURNAL OF BOTANY (2022)
Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential
Eric Capo et al.
ENVIRONMENTAL MICROBIOLOGY (2022)
Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
J. Pawlowski et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2022)
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
Tristan Cordier et al.
SCIENCE ADVANCES (2022)
Impact of climate change on mollusks and other invertebrate resources at the Dominican University of California archaeological site (CA-MRN-254), Marin County, California
Mary McGann et al.
QUATERNARY INTERNATIONAL (2022)
An Outlook for the Acquisition of Marine Sedimentary Ancient DNA (sedaDNA) From North Atlantic Ocean Archive Material
Caitlin A. Selway et al.
PALEOCEANOGRAPHY AND PALEOCLIMATOLOGY (2022)
Temperature Controls eDNA Persistence across Physicochemical Conditions in Seawater
Luke J. McCartin et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2022)
Paleoproductivity proxies and alkenone precursors in the Western Mediterranean during the Early-Middle Pleistocene transition
Maria Marino et al.
PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY (2022)
Ancient marine sediment DNA reveals diatom transition in Antarctica
Linda Armbrecht et al.
NATURE COMMUNICATIONS (2022)
DNA extraction bias is more pronounced for microbial eukaryotes than for prokaryotes
Anne Brauer et al.
MICROBIOLOGYOPEN (2022)
Holocene palaeoceanography of the Northeast Greenland shelf
Teodora Pados-Dibattista et al.
CLIMATE OF THE PAST (2022)
Ecosystems monitoring powered by environmental genomics: A review of current strategies with an implementation roadmap
Tristan Cordier et al.
MOLECULAR ECOLOGY (2021)
Extraordinary diversity of viruses in deep-sea sediments as revealed by metagenomics without prior virion separation
Xiaowei Zheng et al.
ENVIRONMENTAL MICROBIOLOGY (2021)
Optimizing extraction and targeted capture of ancient environmental DNA for reconstructing past environments using the PalaeoChip Arctic-1.0 bait-set
Tyler J. Murchie et al.
QUATERNARY RESEARCH (2021)
Subseafloor Archaea reflect 139 kyrs of paleodepositional changes in the northern Red Sea
Kuldeep D. More et al.
GEOBIOLOGY (2021)
Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir
James A. Fellows Yates et al.
SCIENTIFIC DATA (2021)
Diatom metabarcoding and microscopic analyses from sediment samples at Lake Nam Co, Tibet: The effect of sample-size and bioinformatics on the identified communities
Wengang Kang et al.
ECOLOGICAL INDICATORS (2021)
Could Norwegian fjords serve as an analogue for the future of the Svalbard fjords? State and fate of high latitude fjords in the face of progressive atlantification
Agnieszka Kujawa et al.
POLAR BIOLOGY (2021)
Hybridisation capture allows DNA damage analysis of ancient marine eukaryotes
L. Armbrecht et al.
SCIENTIFIC REPORTS (2021)
Modeling characterization of the vertical and temporal variability of environmental DNA in the mesopelagic ocean
Elizabeth Andruszkiewicz Allan et al.
SCIENTIFIC REPORTS (2021)
Sediment archives reveal irreversible shifts in plankton communities after World War II and agricultural pollution
Raffael Siano et al.
CURRENT BIOLOGY (2021)
Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager
James A. Fellows Yates et al.
PEERJ (2021)
Sedimentary Ancient DNA (sedaDNA) Reveals Fungal Diversity and Environmental Drivers of Community Changes throughout the Holocene in the Present Boreal Lake Lielais Svetinu (Eastern Latvia)
Liisi Talas et al.
MICROORGANISMS (2021)
Sedimentary Ancient DNA From the Subarctic North Pacific: How Sea Ice, Salinity, and Insolation Dynamics Have Shaped Diatom Composition and Richness Over the Past 20,000 Years
H. H. Zimmermann et al.
PALEOCEANOGRAPHY AND PALEOCLIMATOLOGY (2021)
Evaluating sedimentary DNA for tracing changes in cyanobacteria dynamics from sediments spanning the last 350 years of Lake Tiefer See, NE Germany
Ebuka C. Nwosu et al.
JOURNAL OF PALEOLIMNOLOGY (2021)
Environmental DNA for biomonitoring
Jan Pawlowski et al.
MOLECULAR ECOLOGY (2021)
Environmental DNA preserved in marine sediment for detecting jellyfish blooms after a tsunami
Mizuki Ogata et al.
SCIENTIFIC REPORTS (2021)
PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly
Maxime Borry et al.
PEERJ (2021)
Paleo-diatom composition from Santa Barbara Basin deep-sea sediments: a comparison of 18S-V9 and diat-rbcL metabarcoding vs shotgun metagenomics
Anne W. Thompson et al.
ISME COMMUNICATIONS (2021)
An 18S V4 rRNA metabarcoding dataset of protist diversity in the Atlantic inflow to the Arctic Ocean, through the year and down to 1000 m depth
Elianne Egge et al.
EARTH SYSTEM SCIENCE DATA (2021)
Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations
Eric Capo et al.
QUATERNARY (2021)
Release and degradation of environmental DNA and RNA in a marine system
Susanna A. Wood et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2020)
A practical guide to DNA metabarcoding for entomological ecologists
Mingxin Liu et al.
ECOLOGICAL ENTOMOLOGY (2020)
A complete Holocene lake sediment ancient DNA record reveals long-standing high Arctic plant diversity hotspot in northern Svalbard
Linn H. Voldstad et al.
QUATERNARY SCIENCE REVIEWS (2020)
An optimized method for the extraction of ancient eukaryote DNA from marine sediments
Linda Armbrecht et al.
MOLECULAR ECOLOGY RESOURCES (2020)
PIA: More Accurate Taxonomic Assignment of Metagenomic Data Demonstrated on sedaDNA From the North Sea
Becky Cribdon et al.
FRONTIERS IN ECOLOGY AND EVOLUTION (2020)
Sinking Versus Suspended Particle Size Distributions in the North Pacific Subtropical Gyre
B. B. Cael et al.
GEOPHYSICAL RESEARCH LETTERS (2020)
Putting COI Metabarcoding in Context: The Utility of Exact Sequence Variants (ESVs) in Biodiversity Analysis
Teresita M. Porter et al.
FRONTIERS IN ECOLOGY AND EVOLUTION (2020)
Multiproxy paleoceanographic study from the western Barents Sea reveals dramatic Younger Dryas onset followed by oscillatory warming trend
Magdalena Lacka et al.
SCIENTIFIC REPORTS (2020)
Planktonic foraminifera genomic variations reflect paleoceanographic changes in the Arctic: evidence from sedimentary ancient DNA
Joanna Pawlowska et al.
SCIENTIFIC REPORTS (2020)
Sedimentary DNA tracks decadal-centennial changes in fish abundance
Michinobu Kuwae et al.
COMMUNICATIONS BIOLOGY (2020)
Planktonic foraminifera eDNA signature deposited on the seafloor remains preserved after burial in marine sediments
Ines Barrenechea Angeles et al.
SCIENTIFIC REPORTS (2020)
Weak Influence of Paleoenvironmental Conditions on the Subsurface Biosphere of Lake Ohrid over the Last 515 ka
Camille Thomas et al.
MICROORGANISMS (2020)
Comparing sediment DNA extraction methods for assessing organic enrichment associated with marine aquaculture
John K. Pearman et al.
PEERJ (2020)
Changes in the composition of marine and sea-ice diatoms derived from sedimentary ancient DNA of the eastern Fram Strait over the past 30 000 years
Heike H. Zimmermann et al.
OCEAN SCIENCE (2020)
Lessons from a high-CO2 world: an ocean view from ∼ 3 million years ago
Erin L. McClymont et al.
CLIMATE OF THE PAST (2020)
Multiproxy evidence of the Neoglacial expansion of Atlantic Water to eastern Svalbard
Joanna Pawlowska et al.
CLIMATE OF THE PAST (2020)
Dead or alive: sediment DNA archives as tools for tracking aquatic evolution and adaptation
Marianne Ellegaard et al.
COMMUNICATIONS BIOLOGY (2020)
Dinocyst and acritarch biostratigraphy of the Late Pliocene to Early Pleistocene at Integrated Ocean Drilling Program Site U1307 in the Labrador Sea
Aurelie Marcelle Renee Aubry et al.
JOURNAL OF MICROPALAEONTOLOGY (2020)
Holocene paleodepositional changes reflected in the sedimentary microbiome of the Black Sea
Kuldeep D. More et al.
GEOBIOLOGY (2019)
Broadening the taxonomic scope of coral reef palaeoecological studies using ancient DNA
Maria del Carmen Gomez Cabrera et al.
MOLECULAR ECOLOGY (2019)
The potential of sedimentary ancient DNA for reconstructing past sea ice evolution
Stijn De Schepper et al.
ISME JOURNAL (2019)
A global perspective for biodiversity history with ancient environmental DNA
Laura S. Epp
MOLECULAR ECOLOGY (2019)
High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution
Benjamin J. Callahan et al.
NUCLEIC ACIDS RESEARCH (2019)
Archaea dominate oxic subseafloor communities over multimillion-year time scales
Aurele Vuillemin et al.
SCIENCE ADVANCES (2019)
Transport Bias by Ocean Currents in Sedimentary Microplankton Assemblages: Implications for Paleoceanographic Reconstructions
Peter D. Nooteboom et al.
PALEOCEANOGRAPHY AND PALEOCLIMATOLOGY (2019)
Ancient DNA from marine sediments: Precautions and considerations for seafloor coring, sample handling and data generation
Linda H. Armbrecht et al.
EARTH-SCIENCE REVIEWS (2019)
The Influence of Plankton Community Structure on Sinking Velocity and Remineralization Rate of Marine Aggregates
L. T. Bach et al.
GLOBAL BIOGEOCHEMICAL CYCLES (2019)
Legacy of a Pleistocene bacterial community: Patterns in community dynamics through changing ecosystems
Shan P. Thomas et al.
MICROBIOLOGICAL RESEARCH (2019)
Postglacial paleoceanography of the western Barents Sea: Implications for alkenone-based sea surface temperatures and primary productivity
Magdalena Lacka et al.
QUATERNARY SCIENCE REVIEWS (2019)
Cretaceous calcareous dinoflagellate cysts as recorder of δ44/40Caseawater and paleo-temperature using Sr/Ca thermometry
Nikolaus Gussone et al.
CHEMICAL GEOLOGY (2018)
A 43 kyr record of protist communities and their response to oxygen minimum zone variability in the Northeastern Arabian Sea
Kuldeep D. More et al.
EARTH AND PLANETARY SCIENCE LETTERS (2018)
Determination of adsorption and desorption of DNA molecules on freshwater and marine sediments
J. Xue et al.
JOURNAL OF APPLIED MICROBIOLOGY (2018)
SEDIMENTARY, GEOCHEMICAL AND MICROPALEONTOLOGICAL RESPONSES TO SEA LEVEL VARIATIONS IN THE VITORIA ESTUARY, ESPIRITO SANTO
Giseli Modolo Vieira Machado et al.
RADIOCARBON (2018)
The effect of tides on nearshore environmental DNA
Ryan P. Kelly et al.
PEERJ (2018)
Diatoms in Arctic regions: Potential tools to decipher environmental changes
Arto Miettinen
POLAR SCIENCE (2018)
Preservation of microbial DNA in marine sediments: insights from extracellular DNA pools
Andrea Torti et al.
ENVIRONMENTAL MICROBIOLOGY (2018)
Environmental DNA Time Series in Ecology
Miklos Balint et al.
TRENDS IN ECOLOGY & EVOLUTION (2018)
Persistence of environmental DNA in marine systems
Rupert A. Collins et al.
COMMUNICATIONS BIOLOGY (2018)
Ancient DNA analysis identifies marine mollusc shells as new metagenomic archives of the past
Clio Der Sarkissian et al.
MOLECULAR ECOLOGY RESOURCES (2017)
Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus
Laura S. Weyrich et al.
NATURE (2017)
A new model for ancient DNA decay based on paleogenomic meta-analysis
Logan Kistler et al.
NUCLEIC ACIDS RESEARCH (2017)
Dinoflagellate cyst paleoecology during the Pliocene -Pleistocene climatic transition in the North Atlantic
Jan A. I. Hennissen et al.
PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY (2017)
Younger Dryas ice margin retreat triggered by ocean surface warming in central-eastern Baffin Bay
Mimmi Oksman et al.
NATURE COMMUNICATIONS (2017)
From the field to the laboratory: Controlling DNA contamination in human ancient DNA research in the high-throughput sequencing era
Bastien Llamas et al.
SCIENCE AND TECHNOLOGY OF ARCHAEOLOGICAL RESEARCH (2017)
Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology
Raphael Morard et al.
BIOGEOSCIENCES (2017)
SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare?
Monika Balvociute et al.
BMC GENOMICS (2017)
Fossil DNA persistence and decay in marine sediment over hundred-thousand-year to million-year time scales
John B. Kirkpatrick et al.
GEOLOGY (2016)
Influence of plankton community structure on the sinking velocity of marine aggregates
L. T. Bach et al.
GLOBAL BIOGEOCHEMICAL CYCLES (2016)
Ancient sedimentary DNA reveals past tsunami deposits
Witold Szczucinski et al.
MARINE GEOLOGY (2016)
Constructing bibliometric networks: A comparison between full and fractional counting
Antonio Perianes-Rodriguez et al.
JOURNAL OF INFORMETRICS (2016)
A comparison of DNA extraction methods for biodiversity studies of eukaryotes in marine sediments
K. Lekang et al.
AQUATIC MICROBIAL ECOLOGY (2015)
Origin, dynamics, and implications of extracellular DNA pools in marine sediments
Andrea Torti et al.
MARINE GENOMICS (2015)
Eukaryotic plankton diversity in the sunlit ocean
Colomban de Vargas et al.
SCIENCE (2015)
Ancient and modern environmental DNA
Mikkel Winther Pedersen et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)
DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
Bruce E. Deagle et al.
BIOLOGY LETTERS (2014)
Ancient DNA sheds new light on the Svalbard foraminiferal fossil record of the last millennium
J. Pawlowska et al.
GEOBIOLOGY (2014)
Ocean circulation model predicts high genetic structure observed in a long-lived pelagic developer
J. M. Sunday et al.
MOLECULAR ECOLOGY (2014)
Identification of Photosynthetic Plankton Communities Using Sedimentary Ancient DNA and Their Response to late-Holocene Climate Change on the Tibetan Plateau
Weiguo Hou et al.
SCIENTIFIC REPORTS (2014)
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
Hakon Jonsson et al.
BIOINFORMATICS (2013)
Ancient DNA complements microfossil record in deep-sea subsurface sediments
Franck Lejzerowicz et al.
BIOLOGY LETTERS (2013)
Microbial control of the dark end of the biological pump
Gerhard J. Herndl et al.
NATURE GEOSCIENCE (2013)
The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
Laure Guillou et al.
NUCLEIC ACIDS RESEARCH (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Selective Stabilization of Ribose by Borate
Yoshihiro Furukawa et al.
ORIGINS OF LIFE AND EVOLUTION OF BIOSPHERES (2013)
Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene
Marco J. L. Coolen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Improving ancient DNA read mapping against modern reference genomes
Mikkel Schubert et al.
BMC GENOMICS (2012)
Sensitive life detection strategies for low-biomass environments: optimizing extraction of nucleic acids adsorbing to terrestrial and Mars analogue minerals
Susana O. L. Direito et al.
FEMS MICROBIOLOGY ECOLOGY (2012)
Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples
Philip Francis Thomsen et al.
PLOS ONE (2012)
Global distribution of microbial abundance and biomass in subseafloor sediment
Jens Kallmeyer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Preservation potential of ancient plankton DNA in Pleistocene marine sediments
A. C. Boere et al.
GEOBIOLOGY (2011)
Preservation, origin and genetic imprint of extracellular DNA in permanently anoxic deep-sea sediments
C. Corinaldesi et al.
MOLECULAR ECOLOGY (2011)
Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments
Beatrice Lecroq et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
7000 Years of Emiliania huxleyi Viruses in the Black Sea
Marco J. L. Coolen
SCIENCE (2011)
Phytoplankton growth after a century of dormancy illuminates past resilience to catastrophic darkness
Sofia Ribeiro et al.
NATURE COMMUNICATIONS (2011)
Ballast minerals and the sinking carbon flux in the ocean: carbon-specific respiration rates and sinking velocity of marine snow aggregates
M. H. Iversen et al.
BIOGEOSCIENCES (2010)
DNA and lipid molecular stratigraphic records of haptophyte succession in the Black Sea during the Holocene
Marco J. L. Coolen et al.
EARTH AND PLANETARY SCIENCE LETTERS (2009)
Late-Holocene succession of dinoflagellates in an Antarctic fjord using a multi-proxy approach: paleoenvironmental genomics, lipid biomarkers and palynomorphs
A. C. Boere et al.
GEOBIOLOGY (2009)
Biochronology and paleoceanography of late Pleistocene and Holocene calcareous nannofossil abundances across the Arctic Basin
Jan Backman et al.
MARINE MICROPALEONTOLOGY (2009)
A universal DNA mini-barcode for biodiversity analysis
Isabelle Meusnier et al.
BMC GENOMICS (2008)
Damage and degradation rates of extracellular DNA in marine sediments: implications for the preservation of gene sequences
C. Corinaldesi et al.
MOLECULAR ECOLOGY (2008)
An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics
James C. Zachos et al.
NATURE (2008)
Persistence of host-specific Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters:: effects of temperature and salinity
Satoshi Okabe et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2007)
217 000-year-old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment
Marco J. L. Coolen et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
Ancient DNA derived from alkenone-biosynthesizing haptophytes and other algae in Holocene sediments from the Black Sea
MJL Coolen et al.
PALEOCEANOGRAPHY (2006)
Ancient olive DNA in pits: preservation, amplification and sequence analysis
R Elbaum et al.
JOURNAL OF ARCHAEOLOGICAL SCIENCE (2006)
Sand DNA - a genetic library of life at the water's edge
RK Naviaux et al.
MARINE ECOLOGY PROGRESS SERIES (2005)
Isolation of nucleic acids and cultures from fossil ice and permafrost
E Willerslev et al.
TRENDS IN ECOLOGY & EVOLUTION (2004)
Phytoplankton and zooplankton seasonal dynamics in a subtropical estuary: importance of cyanobacteria
MC Murrel et al.
JOURNAL OF PLANKTON RESEARCH (2004)
Combined DNA and lipid analyses of sediments reveal changes in Holocene haptophyte and diatom populations in an Antarctic lake
MJL Coolen et al.
EARTH AND PLANETARY SCIENCE LETTERS (2004)