4.7 Article

Transcriptome, Proteome, Histology, and Biochemistry Analysis of Oriental River Prawn Macrobrachium nipponense under Long-term Salinity Exposure

Related references

Note: Only part of the references are listed.
Article Physiology

Transcriptome Analysis to Study the Molecular Response in the Gill and Hepatopancreas Tissues of Macrobrachium nipponense to Salinity Acclimation

Cheng Xue et al.

Summary: This study utilized RNA sequencing to analyze the transcriptomes of gill and hepatopancreas tissues of Macrobrachium nipponense under salinity stress, revealing the molecular mechanisms underlying salinity adaptation. Important salinity adaptation-related genes and signaling pathways, such as ion transport, oxidative phosphorylation, and glycometabolism, were found to be enriched.

FRONTIERS IN PHYSIOLOGY (2022)

Article Biotechnology & Applied Microbiology

RNA-seq Provides Novel Insights into Response to Acute Salinity Stress in Oriental River Prawn Macrobrachium nipponense

Yaoran Fan et al.

Summary: In this study, the gene expression of the oriental river prawn in response to acute high salinity stress was analyzed using high-throughput sequencing. The results revealed that the prawn can adapt to the changes in the environment caused by acute high salinity stress by regulating essential mechanisms such as metabolism, oxidative stress, and ion exchange. Additionally, the study identified the number of genes modified by salinity stress and some important pathways associated with it.

MARINE BIOTECHNOLOGY (2022)

Article Fisheries

Integrated transcriptomic and metabolic analysis response in gills, hepatopancreas, and muscle metabolism in oriental river prawn Macrobrachium nipponense in response to acute high salinity stress

Yaoran Fan et al.

Summary: The study investigated metabolic responses and molecular mechanisms of salinity tolerance in the oriental river prawn, revealing that the organism may regulate mechanisms related to ion exchange, metabolism, and immune responses to adapt to high salinity stress.

AQUACULTURE REPORTS (2022)

Article Biology

A chromosome-level genome assembly of the oriental river prawn, Macrobrachium nipponense

Shubo Jin et al.

Summary: The researchers obtained the first high-quality chromosome-level genome assembly of the oriental river prawn, predicting the chromosome number and a whole-genome duplication event. By integrating genome and transcriptome data, 21 candidate genes related to sex were predicted.

GIGASCIENCE (2021)

Article Biotechnology & Applied Microbiology

RNA-Seq Transcriptome Analysis of the Liver and Brain of the Black Carp (Mylopharyngodon piceus) During Fasting

Ya-Fan Dai et al.

Summary: The study utilized RNA-Seq to analyze the liver and brain transcriptome of black carp during fasting, revealing numerous differentially expressed genes and confirming differences in gene expression related to metabolic and immune pathways between fasting and feeding conditions.

MARINE BIOTECHNOLOGY (2021)

Article Biochemistry & Molecular Biology

Integrated analysis of transcriptomic and metabolomic data to evaluate responses to hypersalinity stress in the gill of the razor clam (Sinonovacula constricta)

Yan Li et al.

Summary: The study revealed that marine mollusks are able to maintain their physiological functions in response to high salinity stress by regulating gene expression and metabolite levels. High salinity stress affects amino acid and carbohydrate metabolism, leading to upregulation of genes related to the immune system, cytoskeleton remodeling, and signal transduction pathways, in order to cope with the impact of high salinity stress.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS (2021)

Article Biochemistry & Molecular Biology

Effects of the acclimation to high salinity on intestinal ion and peptide transporters in two tilapia species that differ in their salinity tolerance

Tapan Kumar Chourasia et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2018)

Article Biochemistry & Molecular Biology

iTRAQ-based quantitative proteomic analysis of the androgenic glands of the oriental river prawn, Macrobrachium nipponense, during nonreproductive and reproductive seasons

Shubo Jin et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS (2018)

Article Biochemical Research Methods

Quantitative proteomics suggests metabolic reprogramming during ETHE1 deficiency

Navid Sahebekhtiari et al.

PROTEOMICS (2016)

Article Biochemical Research Methods

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim et al.

NATURE METHODS (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

Streaming fragment assignment for real-time analysis of sequencing experiments

Adam Roberts et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Review Biochemistry & Molecular Biology

Endoplasmic Reticulum Stress and the Unfolded Protein Response in Nonalcoholic Fatty Liver Disease

Christopher L. Gentile et al.

ANTIOXIDANTS & REDOX SIGNALING (2011)

Article Genetics & Heredity

The complete mitochondrial genome of Macrobrachium nipponense

Keyi Ma et al.

Article Biotechnology & Applied Microbiology

Improving RNA-Seq expression estimates by correcting for fragment bias

Adam Roberts et al.

GENOME BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Chitinases from the black tiger shrimp Penaeus monodon: Phylogenetics, expression and activities

Porranee Proespraiwong et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY (2010)

Article Nutrition & Dietetics

Production of 1-Carbon Units from Glycine Is Extensive in Healthy Men and Women

Yvonne Lamers et al.

JOURNAL OF NUTRITION (2009)

Article Biochemistry & Molecular Biology

Enhanced deacetylation of p53 by the anti-apoptotic protein HSCO in association with histone deacetylase 1

Hisako Higashitsuji et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Review Biochemistry & Molecular Biology

From acute ER stress to physiological roles of the Unfolded Protein Response

J Wu et al.

CELL DEATH AND DIFFERENTIATION (2006)