Related references
Note: Only part of the references are listed.Deep-tissue SWIR imaging using rationally designed small red-shifted near-infrared fluorescent protein
Olena S. Oliinyk et al.
NATURE METHODS (2023)
Mesoporous radiosensitized nanoprobe for enhanced NIR-II photoacoustic imaging-guided accurate radio-chemotherapy
Tao Chen et al.
NANO RESEARCH (2022)
The spatial transcriptomic landscape of the healing mouse intestine following damage
Sara M. Parigi et al.
NATURE COMMUNICATIONS (2022)
Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays
Ao Chen et al.
CELL (2022)
Chemical Design of Activatable Photoacoustic Probes for Precise Biomedical Applications
Yongchao Liu et al.
CHEMICAL REVIEWS (2022)
A wavelength-induced frequency filtering method for fluorescent nanosensors in vivo
Volodymyr B. Koman et al.
NATURE NANOTECHNOLOGY (2022)
Ultrasound-controllable engineered bacteria for cancer immunotherapy
Mohamad H. Abedi et al.
NATURE COMMUNICATIONS (2022)
Lymphatics act as a signaling hub to regulate intestinal stem cell activity
Rachel E. Niec et al.
CELL STEM CELL (2022)
Advanced Light Source Analytical Techniques for Exploring the Biological Behavior and Fate of Nanomedicines
Mingjing Cao et al.
ACS CENTRAL SCIENCE (2022)
Molecular Engineering of NIR-II Fluorophores for Improved Biomedical Detection
Zuhai Lei et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)
A New Class of NIR-II Gold Nanocluster-Based Protein Biolabels for In Vivo Tumor-Targeted Imaging
Xiaorong Song et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)
Three-Dimensional Quantitative Imaging of Native Microbiota Distribution in the Gut
Wei Wang et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)
Spatiotemporal analysis of human intestinal development at single-cell resolution
David Fawkner-Corbett et al.
CELL (2021)
Spatial Control of Probiotic Bacteria in the Gastrointestinal Tract Assisted by Magnetic Particles
Marjorie T. Buss et al.
ADVANCED MATERIALS (2021)
Recent achievements of bioluminescence imaging based on firefly luciferin-luciferase system
Shufeng Li et al.
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY (2021)
Unravelling the collateral damage of antibiotics on gut bacteria
Lisa Maier et al.
NATURE (2021)
Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH
Meng Zhang et al.
NATURE (2021)
Image-guided MALDI mass spectrometry for high-throughput single-organelle characterization
Daniel C. Castro et al.
NATURE METHODS (2021)
Genetically encodable materials for non-invasive biological imaging
Arash Farhadi et al.
NATURE MATERIALS (2021)
SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes
Marc Elosua-Bayes et al.
NUCLEIC ACIDS RESEARCH (2021)
Colonization Dynamics of Multidrug-Resistant Klebsiella pneumoniae Are Dictated by Microbiota-Cluster Group Behavior over Individual Antibiotic Susceptibility: A Metataxonomic Analysis
Janos Juhasz et al.
ANTIBIOTICS-BASEL (2021)
Imaging Commensal Microbiota and Pathogenic Bacteria in the Gut
Liyuan Lin et al.
ACCOUNTS OF CHEMICAL RESEARCH (2021)
Ratiometric Semiconducting Polymer Nanoparticle for Reliable Photoacoustic Imaging of Pneumonia-Induced Vulnerable Atherosclerotic Plaque in Vivo
Yuan Ma et al.
NANO LETTERS (2021)
Gut-microbiota-targeted diets modulate human immune status
Hannah C. Wastyk et al.
CELL (2021)
Microscopic examination of spatial transcriptome using Seq-Scope
Chun-Seok Cho et al.
CELL (2021)
Genetically Encoded Sensor Enables Endogenous RNA Imaging with Conformation-Switching Induced Fluorogenic Proteins
Wen-Jing Zhou et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2021)
Exploring tissue architecture using spatial transcriptomics
Anjali Rao et al.
NATURE (2021)
Ultrasensitive ultrasound imaging of gene expression with signal unmixing
Daniel P. Sawyer et al.
NATURE METHODS (2021)
Spatial transcriptomics of planktonic and sessile bacterial populations at single-cell resolution
Daniel Dar et al.
SCIENCE (2021)
Clump sequencing exposes the spatial expression programs of intestinal secretory cells
Rita Manco et al.
NATURE COMMUNICATIONS (2021)
Surfactant-Stripped Micelles with Aggregation-Induced Enhanced Emission for Bimodal Gut Imaging In Vivo and Microbiota Tagging Ex Vivo
Zhen Jiang et al.
ADVANCED HEALTHCARE MATERIALS (2021)
NIR light-responsive bacteria with live bio-glue coatings for precise colonization in the gut
Meihui Cui et al.
CELL REPORTS (2021)
Spatial discordances between mRNAs and proteins in the intestinal epithelium
Yotam Harnik et al.
NATURE METABOLISM (2021)
Synthetic biomarkers: a twenty-first century path to early cancer detection
Gabriel A. Kwong et al.
NATURE REVIEWS CANCER (2021)
Metabolic Labeling of Peptidoglycan with NIR-II Dye Enables In Vivo Imaging of Gut Microbiota
Wei Wang et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2020)
Precise and Programmable Detection of Mutations Using Ultraspecific Riboregulators
Fan Hong et al.
CELL (2020)
Noninvasive PET tracking of post-transplant gut microbiota in living mice
Yanpu Wang et al.
EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING (2020)
Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas
Reuben Moncada et al.
NATURE BIOTECHNOLOGY (2020)
Quantification of Bacterial Metabolic Activities in the Gut by d-Amino Acid-Based In Vivo Labeling
Lin Liyuan et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2020)
Activity-Based Diagnostics: An Emerging Paradigm for Disease Detection and Monitoring
Ava P. Soleimany et al.
TRENDS IN MOLECULAR MEDICINE (2020)
Molecular Fluorophores for Deep-Tissue Bioimaging
Shangfeng Wang et al.
ACS CENTRAL SCIENCE (2020)
Cell-free biosensors for rapid detection of water contaminants
Jaeyoung K. Jung et al.
NATURE BIOTECHNOLOGY (2020)
Acoustic biosensors for ultrasound imaging of enzyme activity
Anupama Lakshmanan et al.
NATURE CHEMICAL BIOLOGY (2020)
Engineering synthetic breath biomarkers for respiratory disease
Leslie W. Chan et al.
NATURE NANOTECHNOLOGY (2020)
Bacterial Peptidoglycans from Microbiota in Neurodevelopment and Behavior
Ayoze Gonzalez-Santana et al.
TRENDS IN MOLECULAR MEDICINE (2020)
Organic NIR-II molecule with long blood half-life for in vivo dynamic vascular imaging
Benhao Li et al.
NATURE COMMUNICATIONS (2020)
The maternal microbiome modulates fetal neurodevelopment in mice
Helen E. Vuong et al.
NATURE (2020)
NIR-II bioluminescence for in vivo high contrast imaging and in situ ATP-mediated metastases tracing
Lingfei Lu et al.
NATURE COMMUNICATIONS (2020)
Highly multiplexed spatial mapping of microbial communities
Hao Shi et al.
NATURE (2020)
The gut microbiota is associated with immune cell dynamics in humans
Jonas Schluter et al.
NATURE (2020)
Mass spectrometry-based metabolomics: Targeting the crosstalk between gut microbiota and brain in neurodegenerative disorders
Hemi Luan et al.
MASS SPECTROMETRY REVIEWS (2019)
Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution
Samuel G. Rodriques et al.
SCIENCE (2019)
Assessing the viability of transplanted gut microbiota by sequential tagging with D-amino acid-based metabolic probes
Wei Wang et al.
NATURE COMMUNICATIONS (2019)
SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues
Jocelyn Y. Kishi et al.
NATURE METHODS (2019)
Spatial metagenomic characterization of microbial biogeography in the gut
Ravi U. Sheth et al.
NATURE BIOTECHNOLOGY (2019)
NIR-light-mediated spatially selective triggering of anti-tumor immunity via upconversion nanoparticle-based immunodevices
Hongqian Chu et al.
NATURE COMMUNICATIONS (2019)
Structure-Based Mutagenesis of Phycobiliprotein smURFP for Optoacoustic Imaging
Juan Pablo Fuenzalida Werner et al.
ACS CHEMICAL BIOLOGY (2019)
High-definition spatial transcriptomics for in situ tissue profiling
Sanja Vickovic et al.
NATURE METHODS (2019)
NIR-II Driven Plasmon-Enhanced Catalysis for a Timely Supply of Oxygen to Overcome Hypoxia-Induced Radiotherapy Tolerance
Yue Yang et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2019)
The expanding horizons of host-microorganism imaging are clear to see
Patrick G. Inns et al.
NATURE REVIEWS MICROBIOLOGY (2019)
Mechanically resolved imaging of bacteria using expansion microscopy
Youngbin Lim et al.
PLOS BIOLOGY (2019)
Metagenomic engineering of the mammalian gut microbiome in situ
Carlotta Ronda et al.
NATURE METHODS (2019)
Three-dimensional intact-tissue sequencing of single-cell transcriptional states
Xiao Wang et al.
SCIENCE (2018)
Stable-Isotope Probing of Human and Animal Microbiome Function
David Berry et al.
TRENDS IN MICROBIOLOGY (2018)
DNA-Sequence-Encoded Rolling Circle Amplicon for Single-Cell RNA Imaging
Ruijie Deng et al.
CHEM (2018)
Spatial Reconstruction of Single Enterocytes Uncovers Broad Zonation along the Intestinal Villus Axis
Andreas E. Moor et al.
CELL (2018)
Acoustic reporter genes for noninvasive imaging of microorganisms in mammalian hosts
Raymond W. Bourdeau et al.
NATURE (2018)
Acoustogenic Probes: A New Frontier in Photoacoustic Imaging
Hailey J. Knox et al.
ACCOUNTS OF CHEMICAL RESEARCH (2018)
Gut microbiota in the pathogenesis of inflammatory bowel disease
Atsushi Nishida et al.
CLINICAL JOURNAL OF GASTROENTEROLOGY (2018)
A general method to fine-tune fluorophores for live-cell and in vivo imaging
Jonathan B. Grimm et al.
NATURE METHODS (2017)
Noninvasive photoacoustic identification and imaging of gut microbes
Xiaoxiao Huang et al.
OPTICS LETTERS (2017)
Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice
Jessica L. Mark Welch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Microscale spatial analysis provides evidence for adhesive monopolization of dietary nutrients by specific intestinal bacteria
Yusuke Nagara et al.
PLOS ONE (2017)
Gut Microbiome and Antibiotics
Tadasu Iizumi et al.
ARCHIVES OF MEDICAL RESEARCH (2017)
Tunable Expression Tools Enable Single-Cell Strain Distinction in the Gut Microbiome
Weston R. Whitaker et al.
CELL (2017)
The Gut Microbiome: Connecting Spatial Organization to Function
Carolina Tropini et al.
CELL HOST & MICROBE (2017)
Multiscale photoacoustic tomography using reversibly switchable bacterial phytochrome as a near-infrared photochromic probe
Junjie Yao et al.
NATURE METHODS (2016)
Gut biogeography of the bacterial microbiota
Gregory P. Donaldson et al.
NATURE REVIEWS MICROBIOLOGY (2016)
The quest for multiplexed spatially resolved transcriptional profiling
Carolina Wahlby
NATURE METHODS (2016)
Expansion microscopy with conventional antibodies and fluorescent proteins
Tyler J. Chozinski et al.
NATURE METHODS (2016)
Nanoscale imaging of RNA with expansion microscopy
Fei Chen et al.
NATURE METHODS (2016)
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
Patrik L. Stahl et al.
SCIENCE (2016)
Culture of previously uncultured members of the human gut microbiota by culturomics
Jean-Christophe Lagier et al.
NATURE MICROBIOLOGY (2016)
Quantitative Imaging of Gut Microbiota Spatial Organization
Kristen A. Earle et al.
CELL HOST & MICROBE (2015)
Synthetic biology devices for in vitro and in vivo diagnostics
Shimyn Slomovic et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Spatially resolved, highly multiplexed RNA profiling in single cells
Kok Hao Chen et al.
SCIENCE (2015)
Highly Multiplexed Subcellular RNA Sequencing in Situ
Je Hyuk Lee et al.
SCIENCE (2014)
Imaging Enterobacteriaceae infection in vivo with 18F-fluorodeoxysorbitol positron emission tomography
Edward A. Weinstein et al.
SCIENCE TRANSLATIONAL MEDICINE (2014)
Control of pathogens and pathobionts by the gut microbiota
Nobuhiko Kamada et al.
NATURE IMMUNOLOGY (2013)
In situ sequencing for RNA analysis in preserved tissue and cells
Rongqin Ke et al.
NATURE METHODS (2013)
The Gut Microbiome: A New Frontier in Autism Research
Jennifer G. Mulle et al.
CURRENT PSYCHIATRY REPORTS (2013)
Role of the gut microbiota in health and chronic gastrointestinal disease: understanding a hidden metabolic organ
Caitriona M. Guinane et al.
THERAPEUTIC ADVANCES IN GASTROENTEROLOGY (2013)
Single-cell systems biology by super-resolution imaging and combinatorial labeling
Eric Lubeck et al.
NATURE METHODS (2012)
Fecal microbiota transplantation and emerging applications
Thomas J. Borody et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2012)
Techniques used to characterize the gut microbiota: a guide for the clinician
Marianne H. Fraher et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2012)
The role of the gut microbiota in nutrition and health
Harry J. Flint et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2012)
Host-Gut Microbiota Metabolic Interactions
Jeremy K. Nicholson et al.
SCIENCE (2012)
Spatial organization of intestinal microbiota in the mouse ascending colon
Gerardo M. Nava et al.
ISME JOURNAL (2011)
Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging
Alex M. Valm et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
A role for Campylobacter jejuni-induced enteritis in inflammatory bowel disease?
Lisa D. Kalischuk et al.
AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2010)
In Vivo Bioluminescence Imaging for the Study of Intestinal Colonization by Escherichia coli in Mice
M. -L. Foucault et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Imbalance in intestinal microflora constitution could be involved in the pathogenesis of inflammatory bowel disease
Hirornasa Takaishi et al.
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2008)
Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
Rudolf Amann et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Molecular diversity, cultivation, and improved detection by fluorescent in situ hybridization of a dominant group of human gut bacteria related to Roseburia spp. or Eubacterium rectale
Rustam I. Aminov et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Lupin kernel fiber consumption modifies fecal microbiota in healthy men as determined by rRNA gene fluorescent in situ hybridization
Stuart C. Smith et al.
EUROPEAN JOURNAL OF NUTRITION (2006)
Laser-capture microdissection
Virginia Espina et al.
NATURE PROTOCOLS (2006)
Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease
A Swidsinski et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
Spatial organization of bacterial flora in normal and inflamed intestine: A fluorescence in situ hybridization study in mice
Alexander Swidsinski et al.
WORLD JOURNAL OF GASTROENTEROLOGY (2005)