Related references
Note: Only part of the references are listed.Interaction capacity as a potential driver of community diversity
Masayuki Ushio
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2022)
Bacteriome Structure, Function, and Probiotics in Fish Larviculture: The Good, the Bad, and the Gaps
Nuno Borges et al.
ANNUAL REVIEW OF ANIMAL BIOSCIENCES, VOL 9, 2021 (2021)
Host habitat is the major determinant of the gut microbiome of fish
Pil Soo Kim et al.
MICROBIOME (2021)
MEGA11 Molecular Evolutionary Genetics Analysis Version 11
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Microbiome diversity and dysbiosis in aquaculture
Sandra Infante-Villamil et al.
REVIEWS IN AQUACULTURE (2021)
A microbial sea of possibilities: current knowledge and prospects for an improved understanding of the fish microbiome
Thibault P. R. A. Legrand et al.
REVIEWS IN AQUACULTURE (2020)
Environmental DNA reveals seasonal shifts and potential interactions in a marine community
Anni Djurhuus et al.
NATURE COMMUNICATIONS (2020)
PICRUSt2 for prediction of metagenome functions
Gavin M. Douglas et al.
NATURE BIOTECHNOLOGY (2020)
Mapping the bacterial metabolic niche space
Ashkaan K. Fahimipour et al.
NATURE COMMUNICATIONS (2020)
Draft Genome Sequences of Cetobacterium somerae 2G Large and Two Novel Cetobacterium Isolates from Intestines of Channel Catfish (Ictalurus punctatus)
Benjamin R. LaFrentz et al.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2020)
Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes
Johannes Alneberg et al.
COMMUNICATIONS BIOLOGY (2020)
Probiotic application for sustainable aquaculture
Mahmoud A. O. Dawood et al.
REVIEWS IN AQUACULTURE (2019)
The microbiome and antibiotic resistance in integrated fishfarm water: Implications of environmental public health
Gary Klase et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2019)
Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
Nicholas D. Youngblut et al.
NATURE COMMUNICATIONS (2019)
Host-Associated Bacterial Succession during the Early Embryonic Stages and First Feeding in Farmed Gilthead Sea Bream (Sparus aurata)
Eleni Nikouli et al.
GENES (2019)
Component Microenvironments and System Biogeography Structure Microorganism Distributions in Recirculating Aquaculture and Aquaponic Systems
Ryan P. Bartelme et al.
MSPHERE (2019)
Dysbiosis of intestinal microbiota induced by dietary oxidized fish oil and recovery of diet-induced dysbiosis via taurine supplementation in rice field eel (Monopterus albus)
Mo Peng et al.
AQUACULTURE (2019)
The Gastrointestinal Microbiome: A Review
P. C. Barko et al.
JOURNAL OF VETERINARY INTERNAL MEDICINE (2018)
Community composition, diversity, and metabolism of intestinal microbiota in cultivated European eel (Anguilla anguilla)
Wei Huang et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)
Revealing the compositions of the intestinal microbiota of three Anguillid eel species using 16S rDNA sequencing
Hsiang-Yi Hsu et al.
AQUACULTURE RESEARCH (2018)
Environmental DNA metabarcoding of benthic bacterial communities indicates the benthic footprint of salmon aquaculture
Thorsten Stoeck et al.
MARINE POLLUTION BULLETIN (2018)
Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
Daniel Machado et al.
NUCLEIC ACIDS RESEARCH (2018)
KEGG: new perspectives on genomes, pathways, diseases and drugs
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2017)
Edaphobaculum flavum gen. nov., sp nov., a member of family Chitinophagaceae, isolated from grassland soil
Min Cao et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)
Fish intestinal microbiome: diversity and symbiosis unravelled by metagenomics
A. M. Tarnecki et al.
JOURNAL OF APPLIED MICROBIOLOGY (2017)
Dynamics of the human gut microbiome in inflammatory bowel disease
Jonas Halfvarson et al.
NATURE MICROBIOLOGY (2017)
Deep-sequencing of the bacterial microbiota in commercial-scale recirculating and semi-closed aquaculture systems for Atlantic salmon post-smolt production
Ida Rud et al.
AQUACULTURAL ENGINEERING (2017)
Dysbiosis and the immune system
Maayan Levy et al.
NATURE REVIEWS IMMUNOLOGY (2017)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
Amy Apprill et al.
AQUATIC MICROBIAL ECOLOGY (2015)
Anaerobic biosynthesis of the lower ligand of vitamin B12
Amrita B. Hazra et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Metabolic dependencies drive species co-occurrence in diverse microbial communities
Aleksej Zelezniak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Sparse and Compositionally Robust Inference of Microbial Ecological Networks
Zachary D. Kurtz et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Emerging flavobacterial infections in fish: A review
Thomas P. Loch et al.
JOURNAL OF ADVANCED RESEARCH (2015)
Vitamin B12 as a Modulator of Gut Microbial Ecology
Patrick H. Degnan et al.
CELL METABOLISM (2014)
Acinetobacter johnsonii and Acinetobacter lwoffii - the emerging fish pathogens
Alicja Kozinska et al.
BULLETIN OF THE VETERINARY INSTITUTE IN PULAWY (2014)
Biofilm Formation by the Fish Pathogen Flavobacterium columnare: Development and Parameters Affecting Surface Attachment
Wenlong Cai et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
The mucosal immune system of fish: The evolution of tolerating commensals while fighting pathogens
Daniela Gomez et al.
FISH & SHELLFISH IMMUNOLOGY (2013)
Slowing PCR ramp speed reduces chimera formation from environmental samples
Julia L. Stevens et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Practical innovations for high-throughput amplicon sequencing
Derek S. Lundberg et al.
NATURE METHODS (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Animals in a bacterial world, a new imperative for the life sciences
Margaret McFall-Ngai et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis
Jacques Ravel et al.
MICROBIOME (2013)
Searching for Solutions in Aquaculture: Charting a Sustainable Course
Dane Klinger et al.
ANNUAL REVIEW OF ENVIRONMENT AND RESOURCES, VOL 37 (2012)
Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags
Yu Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
APPLICATIONS OF NEXT-GENERATION SEQUENCING The human microbiome: at the interface of health and disease
Ilseung Cho et al.
NATURE REVIEWS GENETICS (2012)
Detecting Causality in Complex Ecosystems
George Sugihara et al.
SCIENCE (2012)
Pathogenesis of and strategies for preventing Edwardsiella tarda infection in fish
Seong Bin Park et al.
VETERINARY RESEARCH (2012)
Detection of type III secretion gene as an indicator for pathogenic Edwardsiella tarda
G. Y. Li et al.
LETTERS IN APPLIED MICROBIOLOGY (2011)
Enterotypes of the human gut microbiome
Manimozhiyan Arumugam et al.
NATURE (2011)
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
J. Gregory Caporaso et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Immunological Control of Fish Diseases
Bergljot Magnadottir
MARINE BIOTECHNOLOGY (2010)
Aquaculture: global status and trends
John Bostock et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
Micah Hamady et al.
NATURE METHODS (2008)
Worlds within worlds: evolution of the vertebrate gut microbiota
Ruth E. Ley et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Twin surrogates to test for complex synchronisation
M. Thiel et al.
EUROPHYSICS LETTERS (2006)
A review of the main bacterial fish diseases in mariculture systems
AE Toranzo et al.
AQUACULTURE (2005)
rrndb: the Ribosomal RNA Operon Copy Number Database
JA Klappenbach et al.
NUCLEIC ACIDS RESEARCH (2001)
Measuring information transfer
T Schreiber
PHYSICAL REVIEW LETTERS (2000)