Related references
Note: Only part of the references are listed.CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data
Congxue Hu et al.
NUCLEIC ACIDS RESEARCH (2023)
Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data
Duanchen Sun et al.
NATURE BIOTECHNOLOGY (2022)
Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution
Gregory D. Sepich-Poore et al.
BIOESSAYS (2022)
Tumor-resident intracellular microbiota promotes metastatic colonization in breast cancer
Aikun Fu et al.
CELL (2022)
Spatiotemporal Immune Landscape of Colorectal Cancer Liver Metastasis at Single-Cell Level
Yingcheng Wu et al.
CANCER DISCOVERY (2022)
Variations in the Gut Microbiota in Breast Cancer Occurrence and Bone Metastasis
Yu Wenhui et al.
FRONTIERS IN MICROBIOLOGY (2022)
Microbiota in Tumors: From Understanding to Application
Yifan Xie et al.
ADVANCED SCIENCE (2022)
Effect of the intratumoral microbiota on spatial and cellular heterogeneity in cancer
Jorge Luis Galeano Nino et al.
NATURE (2022)
Oncogenic collagen I homotrimers from cancer cells bind to α3β1 integrin and impact tumor microbiome and immunity to promote pancreatic cancer
Yang Chen et al.
CANCER CELL (2022)
Systematic single-cell pathway analysis to characterize early T cell activation
Jack A. Bibby et al.
CELL REPORTS (2022)
The effect of the intratumoral microbiome on tumor occurrence, progression, prognosis and treatment
Feng Gao et al.
FRONTIERS IN IMMUNOLOGY (2022)
Local Breast Microbiota: A New Player on the Block
Marina Vitorino et al.
CANCERS (2022)
Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer
Xuelian Yuan et al.
FRONTIERS IN MICROBIOLOGY (2022)
Microbiota of Breast Tissue and Its Potential Association with Regional Recurrence of Breast Cancer in Korean Women
Hyo-Eun Kim et al.
JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY (2021)
A single-cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast
Bhupinder Pal et al.
EMBO JOURNAL (2021)
oncoPredict: an R package for predicting in vivo or cancer patient drug response and biomarkers from cell line screening data
Danielle Maeser et al.
BRIEFINGS IN BIOINFORMATICS (2021)
Diet Alters Entero-Mammary Signaling to Regulate the Breast Microbiome and Tumorigenesis
David R. Soto-Pantoja et al.
CANCER RESEARCH (2021)
Early Breast Cancer Detection Using Untargeted and Targeted Metabolomics
Yiping Wei et al.
JOURNAL OF PROTEOME RESEARCH (2021)
Therapeutic targeting of the hypoxic tumour microenvironment
Dean C. Singleton et al.
NATURE REVIEWS CLINICAL ONCOLOGY (2021)
Structure and Function of Oral Microbial Community in Periodontitis Based on Integrated Data
Zhengwen Cai et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2021)
Interpretable systems biomarkers predict response to immune-checkpoint inhibitors
Oscar Lapuente-Santana et al.
PATTERNS (2021)
Profiling of host genetic alterations and intra-tumor microbiomes in colorectal cancer
Shujiro Okuda et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2021)
Bacteria Boost Mammalian Host NAD Metabolism by Engaging the Deamidated Biosynthesis Pathway
Igor Shats et al.
CELL METABOLISM (2020)
Mutational signature in colorectal cancer caused by genotoxic pks+E. coli
Cayetano Pleguezuelos-Manzano et al.
NATURE (2020)
The human tumor microbiome is composed of tumor type-specific intracellular bacteria
Deborah Nejman et al.
SCIENCE (2020)
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
Gregory D. Poore et al.
NATURE (2020)
Metabolite sensing and signaling in cancer
Yi-Ping Wang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2020)
Microbiota-derived metabolite promotes HDAC3 activity in the gut
Shu-en Wu et al.
NATURE (2020)
Antimicrobial drug use in the first decade of life influences saliva microbiota diversity and composition
Sajan C. Raju et al.
MICROBIOME (2020)
Mutagenesis by Microbe: the Role of the Microbiota in Shaping the Cancer Genome
Maurice Barrett et al.
TRENDS IN CANCER (2020)
Commensal Microbiota Promote Lung Cancer Development via γδ T Cells
Chengcheng Jin et al.
CELL (2019)
MicrobiomeMicrobial MetabolomeCancer Cell Interactions in Breast CancerFamiliar, but Unexplored
Edit Miko et al.
CELLS (2019)
Association between the cervicovaginal microbiome, BRCA1 mutation status, and risk of ovarian cancer: a case-control study
Nuno R. Nene et al.
LANCET ONCOLOGY (2019)
Fast, sensitive and accurate integration of single-cell data with Harmony
Ilya Korsunsky et al.
NATURE METHODS (2019)
Role of the microbiome in human development
Maria Gloria Dominguez-Bello et al.
GUT (2019)
Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors
Bertrand Routy et al.
SCIENCE (2018)
Microbial signals drive pre-leukaemic myeloproliferation in a Tet2-deficient host
Marlies Meisel et al.
NATURE (2018)
The microbiome in cancer immunotherapy: Diagnostic tools and therapeutic strategies
Laurence Zitvogel et al.
SCIENCE (2018)
Perturbation-response genes reveal signaling footprints in cancer gene expression
Michael Schubert et al.
NATURE COMMUNICATIONS (2018)
Breast Cancer and Its Relationship with the Microbiota
Mariana F. Fernandez et al.
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH (2018)
A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade
Livnat Jerby-Arnon et al.
CELL (2018)
Characterization of human breast tissue microbiota from core needle biopsies through the analysis of multi hypervariable 16S-rRNA gene regions
Lara Costantini et al.
SCIENTIFIC REPORTS (2018)
Evolution, human-microbe interactions, and life history plasticity
Graham Rook et al.
LANCET (2017)
Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine
Leore T. Geller et al.
SCIENCE (2017)
Host-Microbe Co-metabolism Dictates Cancer Drug Efficacy in C. elegans
Timothy A. Scott et al.
CELL (2017)
TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data
Antonio Colaprico et al.
NUCLEIC ACIDS RESEARCH (2016)
The Microbiota of Breast Tissue and Its Association with Breast Cancer
Camilla Urbaniak et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling
Maayan Levy et al.
CELL (2015)
Metabolic pathways promoting cancer cell survival and growth
Lindsey K. Boroughs et al.
NATURE CELL BIOLOGY (2015)
Oral Microbiota and Risk for Esophageal Squamous Cell Carcinoma in a High-Risk Area of China
Xingdong Chen et al.
PLOS ONE (2015)
Microbiota of Human Breast Tissue
Camilla Urbaniak et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
The gut microbiota, bacterial metabolites and colorectal cancer
Petra Louis et al.
NATURE REVIEWS MICROBIOLOGY (2014)
Microbial Dysbiosis Is Associated with Human Breast Cancer
Caiyun Xuan et al.
PLOS ONE (2014)
A joint analysis of metabolomics and genetics of breast cancer
Xiaohu Tang et al.
BREAST CANCER RESEARCH (2014)
GSVA: gene set variation analysis for microarray and RNA-Seq data
Sonja Haenzelmann et al.
BMC BIOINFORMATICS (2013)
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)
Vaginal microbiome of reproductive-age women
Jacques Ravel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
At the Crossroads of Bacterial Metabolism and Virulence Factor Synthesis in Staphylococci
Greg A. Somerville et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2009)
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
BMC BIOINFORMATICS (2008)