Related references
Note: Only part of the references are listed.Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing
Michael Alonge et al.
GENOME BIOLOGY (2022)
The auxin-responsive transcription factor SlDOF9 regulates inflorescence and flower development in tomato
Guojian Hu et al.
NATURE PLANTS (2022)
Liftoff: accurate mapping of gene annotations
Alaina Shumate et al.
BIOINFORMATICS (2021)
Effects of the sliaa9 Mutation on Shoot Elongation Growth of Tomato Cultivars
Chihiro Abe-Hara et al.
FRONTIERS IN PLANT SCIENCE (2021)
Overexpression of SlHSP90.2 leads to altered root biomass and architecture in tomato (Solanum lycopersicum)
Pawan K. Yadav et al.
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS (2021)
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
Mose Manni et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Characterization of novel regulators for heat stress tolerance in tomato from Indian sub-continent
Sonia Balyan et al.
PLANT BIOTECHNOLOGY JOURNAL (2020)
ENO regulates tomato fruit size through the floral meristem development network
Fernando J. Yuste-Lisbona et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
MetaEuk-sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics
Eli Levy Karin et al.
MICROBIOME (2020)
Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection
Estefania Mata-Nicolas et al.
HORTICULTURE RESEARCH (2020)
SilencingAC1of Tomato leaf curl virus using artificial microRNA confers resistance to leaf curl disease in transgenic tomato
Namisha Sharma et al.
PLANT CELL REPORTS (2020)
Tomato auxin biosynthesis/signaling is reprogrammed by the geminivirus to enhance its pathogenicity
T. Vinutha et al.
PLANTA (2020)
Unraveling the metabolic behavior in tomato high pigment mutants (hp-1, hp-2dg, ogc) and non ripening mutant (rin) during fruit ripening
Harshata Pal et al.
SCIENTIA HORTICULTURAE (2019)
Remusatia vivipara lectin and Sclerotium rolfsii lectin interfere with the development and gall formation activity of Meloidogyne incognita in transgenic tomato
Yogesh S. Bhagat et al.
TRANSGENIC RESEARCH (2019)
The qSAC3 locus from indica rice effectively increases amylose content under a variety of conditions
Hua Zhang et al.
BMC PLANT BIOLOGY (2019)
Microbial Fortification Improved Photosynthetic Efficiency and Secondary Metabolism in Lycopersicon esculentum Plants Under Cd Stress
Kanika Khanna et al.
BIOMOLECULES (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Michael Alonge et al.
GENOME BIOLOGY (2019)
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
Shujun Ou et al.
GENOME BIOLOGY (2019)
Screening of tomato genotypes against bacterial wilt (Ralstonia solanacearum) and validation of resistance linked DNA markers
Sujeet Kumar et al.
AUSTRALASIAN PLANT PATHOLOGY (2018)
Arabidopsis RETICULON-LIKE3 (RTNLB3) and RTNLB8 Participate in Agrobacterium-Mediated Plant Transformation
Fan-Chen Huang et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)
Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield
Zhiying Ma et al.
NATURE GENETICS (2018)
MUMmer4: A fast and versatile genome alignment system
Guillaume Marcais et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
BABY BOOM (BBM): a candidate transcription factor gene in plant biotechnology
Priyanka Jha et al.
BIOTECHNOLOGY LETTERS (2018)
De novo domestication of wild tomato using genome editing
Agustin Zsogon et al.
NATURE BIOTECHNOLOGY (2018)
A common genetic mechanism underlies morphological diversity in fruits and other plant organs
Shan Wu et al.
NATURE COMMUNICATIONS (2018)
Whole-genome re-sequencing of two Italian tomato landraces reveals sequence variations in genes associated with stress tolerance, fruit quality and long shelf-life traits
Valentina Tranchida-Lombardo et al.
DNA RESEARCH (2018)
A Multipurpose Toolkit to Enable Advanced Genome Engineering in Plants
Tomas Cermak et al.
PLANT CELL (2017)
GenomeScope: fast reference-free genome profiling from short reads
Gregory W. Vurture et al.
BIOINFORMATICS (2017)
Genetic improvement of tomato by targeted control of fruit softening
Selman Uluisik et al.
NATURE BIOTECHNOLOGY (2016)
Somatic embryogenesis - Stress-induced remodeling of plant cell fate
Attila Feher
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2015)
Stress induces cell dedifferentiation in plants
Gideon Grafi et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2015)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Genomic variation in tomato, from wild ancestors to contemporary breeding accessions
Jose Blanca et al.
BMC GENOMICS (2015)
A cascade of arabinosyltransferases controls shoot meristem size in tomato
Cao Xu et al.
NATURE GENETICS (2015)
Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development
Mingkun Huang et al.
FRONTIERS IN PLANT SCIENCE (2015)
The Sol Genomics Network (SGN)-from genotype to phenotype to breeding
Noe Fernandez-Pozo et al.
NUCLEIC ACIDS RESEARCH (2015)
Genome-wide genetic changes during modern breeding of maize (vol 44, pg 812, 2012)
Yinping Jiao et al.
NATURE GENETICS (2014)
Genomic analyses provide insights into the history of tomato breeding
Tao Lin et al.
NATURE GENETICS (2014)
Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing
Saulo Aflitos et al.
PLANT JOURNAL (2014)
Stress Induces Plant Somatic Cells to Acquire Some Features of Stem Cells Accompanied by Selective Chromatin Reorganization
Assa Florentin et al.
DEVELOPMENTAL DYNAMICS (2013)
Mapping of two suppressors of OVATE (sov) loci in tomato
G. R. Rodriguez et al.
HEREDITY (2013)
Functional quality and antioxidant composition of selected tomato (Solanum lycopersicon L) cultivars grown in Northern India
Charanjit Kaur et al.
LWT-FOOD SCIENCE AND TECHNOLOGY (2013)
Regulation of ripening and opportunities for control in tomato and other fruits
Graham B. Seymour et al.
PLANT BIOTECHNOLOGY JOURNAL (2013)
Plant Callus: Mechanisms of Induction and Repression
Momoko Ikeuchi et al.
PLANT CELL (2013)
Functional Characterization of Type-B Response Regulators in the Arabidopsis Cytokinin Response
Kristine Hill et al.
PLANT PHYSIOLOGY (2013)
The tomato RLK superfamily: phylogeny and functional predictions about the role of the LRRII-RLK subfamily in antiviral defense
Tetsu Sakamoto et al.
BMC PLANT BIOLOGY (2012)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Influence of Genotypic Variations on Antioxidant Properties in Different Fractions of Tomato
Harish Mani Chandra et al.
JOURNAL OF FOOD SCIENCE (2012)
Uniform ripening Encodes a Golden 2-like Transcription Factor Regulating Tomato Fruit Chloroplast Development
Ann L. T. Powell et al.
SCIENCE (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
Enhanced resistance against bacterial wilt in transgenic tomato (Lycopersicon esculentum) lines expressing the Xa21 gene
Amber Afroz et al.
PLANT CELL TISSUE AND ORGAN CULTURE (2011)
Transgenic tomato plants expressing a wheat endochitinase gene demonstrate enhanced resistance to Fusarium oxysporum f. sp lycopersici
P. V. Girhepuje et al.
PLANT CELL TISSUE AND ORGAN CULTURE (2011)
Efficient production of transgenic tomatoes via Agrobacterium-mediated transformation
P. Kaur et al.
BIOLOGIA PLANTARUM (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
A simple and efficient Agrobacterium-mediated procedure for transformation of tomato
Manoj K. Sharma et al.
JOURNAL OF BIOSCIENCES (2009)
The Solanum lycopersicum auxin response factor 7 (SlARF7) regulates auxin signaling during tomato fruit set and development
Maaike de Jong et al.
PLANT JOURNAL (2009)
Cloning of 9-cis-epoxycarotenoid dioxygenase (NCED) gene and the role of ABA on fruit ripening
Mei Zhang et al.
PLANT SIGNALING & BEHAVIOR (2009)
LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis
Jinye Mu et al.
PLANT PHYSIOLOGY (2008)
The Making of a Compound Inflorescence in Tomato and Related Nightshades
Zachary B. Lippman et al.
PLOS BIOLOGY (2008)
Dendroscope: An interactive viewer for large phylogenetic trees
Daniel H. Huson et al.
BMC BIOINFORMATICS (2007)
The tomato FT ortholog triggers systemic signals that regulate growth and flowering and substitute for diverse environmental stimuli
E Lifschitz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Transformation of tomato cultivar 'Pusa Ruby' with bspA gene from Populus tremula for drought tolerance
R Roy et al.
PLANT CELL TISSUE AND ORGAN CULTURE (2006)
The map-based sequence of the rice genome
T Matsumoto et al.
NATURE (2005)
Utilization of the genetic resources of wild species to create a nontransgenic high flavonoid tomato
MG Willits et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2005)
Zooming in on a quantitative trait for tomato yield using interspecific introgressions
E Fridman et al.
SCIENCE (2004)
AUGUSTUS: a web server for gene finding in eukaryotes
M Stanke et al.
NUCLEIC ACIDS RESEARCH (2004)
Genetic regulation of fruit development and ripening
JJ Giovannoni
PLANT CELL (2004)
Increases in cell elongation, plastid compartment size and phytoene synthase activity underlie the phenotype of the high pigment-1 mutant of tomato
PJ Cookson et al.
PLANTA (2003)
A new class of regulatory genes underlying the cause of pear-shaped tomato fruit
JP Liu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Ectopic expression of BABY BOOM triggers a conversion from vegetative to embryonic growth
K Boutilier et al.
PLANT CELL (2002)
An alternative pathway to β-carotene formation in plant chromoplasts discovered by map-based cloning of Beta and old-gold color mutations in tomato
G Ronen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
JOINTLESS is a MADS-box gene controlling tomato flower abscission zone development
L Mao et al.
NATURE (2000)
fw2.2:: A quantitative trait locus key to the evolution of tomato fruit size
A Frary et al.
SCIENCE (2000)
Share Paper
