4.7 Article

Quantitative trait loci associated with apple endophytes during pathogen infection

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Genomic Characterization of Aureimonas altamirensis C2P003-A Specific Member of the Microbiome of Fraxinus excelsior Trees Tolerant to Ash Dieback

Regina Becker et al.

Summary: Research has found that a bacterium called C2P003 can help resist the invasive pathogen Hymenoscyphus fraxineus, which causes dieback in European ash trees. This bacterium suppresses the infection by colonizing the ash leaves and affecting the bacterial microbiome, leading to improved plant health.

PLANTS-BASEL (2022)

Article Multidisciplinary Sciences

Plant genetic effects on microbial hubs impact host fitness in repeated field trials

Benjamin Brachi et al.

Summary: Host genetic variation has consistent effects on microbial communities, impacting plant fitness. Specific microbial species are preferentially associated with certain genotypes, and the interactions between host genes and microbes significantly affect seed production in plants.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Multidisciplinary Sciences

Disentangling the genetic basis of rhizosphere microbiome assembly in tomato

Ben O. Oyserman et al.

Summary: In this study, the authors integrate microbiomics and quantitative plant genetics to reveal genetic loci associated with specific microbes and rhizobacterial traits underlying microbiome assembly in tomato.

NATURE COMMUNICATIONS (2022)

Article Plant Sciences

Identification of novel genetic regions associated with resistance to European canker in apple

Amanda Karlstrom et al.

Summary: This study identifies the first QTL associated with resistance to Neonectria ditissima in apple scion germplasm. The results show that the QTL present in commonly used apple breeding germplasm have a low to medium effect on resistance to N. ditissima. Therefore, multiple QTL need to be considered to improve resistance through breeding.

BMC PLANT BIOLOGY (2022)

Article Plant Sciences

The Influence of Host Genotypes on the Endophytes in the Leaf Scar Tissues of Apple Trees and Correlation of the Endophytes with Apple Canker (Neonectria ditissima) Development

Matevz Papp-Rupar et al.

Summary: Bacterial and fungal endophytes can help improve the tolerance and growth of host plants. This study investigated the correlation between apple endophytes and the development of European apple canker. The results showed that certain bacterial groups were positively associated with canker tolerance, while some fungal groups may facilitate canker development and others may compete with it.

PHYTOBIOMES JOURNAL (2022)

Review Plant Sciences

Pinpointing secondary metabolites that shape the composition and function of the plant microbiome

Richard P. Jacoby et al.

Summary: Plants use a variety of secondary metabolites to influence the composition and function of the microbiome, which can be enhanced through targeted methods to improve beneficial microbial traits and enhance agricultural sustainability.

JOURNAL OF EXPERIMENTAL BOTANY (2021)

Article Agronomy

Foliar endophytes in trees varying greatly in age

Zhongdong Yu et al.

Summary: This study found that tree age is significantly correlated with the community structure and abundance of foliar endophytes in Platycladus orientalis and Styphnolobium japonicum. As the trees aged, common endophytes tended to decline in abundance while rare endophytes increased.

EUROPEAN JOURNAL OF PLANT PATHOLOGY (2021)

Article Agronomy

On the genetic architecture in a public tropical maize panel of the symbiosis between corn and plant growth-promoting bacteria aiming to improve plant resilience

Rafael Massahiro Yassue et al.

Summary: The study explores the symbiosis between plants and plant growth-promoting bacteria (PGPB) and its impact on plant resilience, highlighting the importance of genetic variability and potential for breeding new cultivars. Results show that synthetic PGPB population can modulate root architecture traits and improve resilience to nitrogen stress. Genetic analysis reveals significant regions controlling the symbiosis between PGPB and tropical maize, with potential candidate SNPs for further investigations. Genomic prediction analysis using significant SNPs from GWAS substantially enhances predictive ability for various traits, emphasizing the importance of genomic regions in PGPB response. The public tropical panel demonstrates significant genetic variability in symbiosis with PGPB, serving as a potential source of alleles to enhance plant resilience.

MOLECULAR BREEDING (2021)

Article Ecology

Genome wide association study reveals plant loci controlling heritability of the rhizosphere microbiome

Siwen Deng et al.

Summary: Research shows that host genetics play a major role in driving plant microbiome composition. Genome-wide association studies (GWAS) are a potentially powerful method to identify microbes sensitive to host genotype and connect them with genetic loci that influence their colonization.

ISME JOURNAL (2021)

Article Microbiology

Apple endophyte community in relation to location, scion and rootstock genotypes and susceptibility to European canker

Leone Olivieri et al.

Summary: The study revealed significant differences in endophyte communities between apple cultivars with different susceptibility to Neonectria ditissima. Specific bacterial and fungal endophyte groups differed in abundance between susceptible and resistant cultivars, including potential pathogen antagonists and plant pathogens. Endophyte diversity was primarily influenced by orchard location, followed by scion genotype, with rootstock effects being minimal.

FEMS MICROBIOLOGY ECOLOGY (2021)

Article Plant Sciences

Bacterial seed endophyte shapes disease resistance in rice

Haruna Matsumoto et al.

Summary: The study revealed that the endophyte bacterium Sphingomonas melonis can provide disease resistance to rice by producing anthranilic acid, inhibiting the virulence factor synthesis of the seed-borne pathogen Burkholderia plantarii. This finding offers new insights to combat globally widespread bacterial diseases threatening modern crop cultivation.

NATURE PLANTS (2021)

Editorial Material Plant Sciences

Endophytes: The Second Layer of Plant Defense

Francisco Dini-Andreote

TRENDS IN PLANT SCIENCE (2020)

Article Multidisciplinary Sciences

A plant genetic network for preventing dysbiosis in the phyllosphere

Tao Chen et al.

NATURE (2020)

Article Biotechnology & Applied Microbiology

Plant resistance and leaf chemical characteristic jointly shape phyllosphere bacterial community

Xueliang Tian et al.

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2020)

Review Plant Sciences

The Role of the Endophytic Microbiome in the Grapevine Response to Environmental Triggers

Davide Pacifico et al.

FRONTIERS IN PLANT SCIENCE (2019)

Article Biotechnology & Applied Microbiology

Relationship between foliar endophytes and apple cultivar disease resistance in an organic orchard

Ayumi Hirakue et al.

BIOLOGICAL CONTROL (2018)

Review Microbiology

Multifaceted Interactions Between Endophytes and Plant: Developments and Prospects

Ekta Khare et al.

FRONTIERS IN MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Genome-wide association study of Arabidopsis thaliana leaf microbial community

Matthew W. Horton et al.

NATURE COMMUNICATIONS (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Robert C. Edgar

NATURE METHODS (2013)

Article Multidisciplinary Sciences

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

Natacha Bodenhausen et al.

PLOS ONE (2013)

Article Biochemistry & Molecular Biology

Maize Leaf Epiphytic Bacteria Diversity Patterns Are Genetically Correlated with Resistance to Fungal Pathogen Infection

Peter Balint-Kurti et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2010)

Article Biochemistry & Molecular Biology

Salicylic acid and jasmonic acid signaling defense pathways reduce natural bacterial diversity on Arabidopsis thaliana

Joel M. Kniskern et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2007)

Article Genetics & Heredity

OneMap: software for genetic mapping in outcrossing species

G. R. A. Margarido et al.

HEREDITAS (2007)