4.7 Article

Metabolomic and transcriptomic analyses reveal the effects of grafting on blood orange quality

Related references

Note: Only part of the references are listed.
Review Food Science & Technology

Effect of Rootstock on Citrus Fruit Quality: A Review

Julia Morales Alfaro et al.

Summary: Citrus rootstocks have a significant impact on fruit quality, including physico-chemical parameters, nutritional compounds, and physiological disorders. External factors such as the interaction between rootstock and scion, water uptake capacity of roots, and modification of photosynthetic rate affect fruit quality.

FOOD REVIEWS INTERNATIONAL (2023)

Article Food Science & Technology

Metabolic profiles, bioactive compounds and antioxidant activity of rosehips from Xinjiang, China

Yanlin Sun et al.

Summary: This study conducted a systematic evaluation of the morphological characteristics, phytochemical components, antioxidant activity, and secondary metabolites of rosehips in Xinjiang, China. Different colored rosehips showed significant differences in morphology and phytochemical composition, with darker ones having higher concentrations of phytochemicals. Extensively targeted metabolomics identified 512 secondary metabolites in five rosehip species, with flavonoids and phenolic acids being the main metabolites. Comparative analysis among species revealed that R. iliensis could be a potential source for food and drug development. The study provides valuable insights into the bioactive components of Rosa species and offers references for their utilization, introduction, and breeding.

LWT-FOOD SCIENCE AND TECHNOLOGY (2023)

Article Plant Sciences

Transcription factor LcNAC002 coregulates chlorophyll degradation and anthocyanin biosynthesis in litchi

Shi-Cheng Zou et al.

Summary: This study reveals the relationship between chlorophyll degradation and anthocyanin biosynthesis during fruit ripening in litchi, and identifies LcSGR as the critical gene in pericarp chlorophyll loss and chloroplast breakdown. LcNAC002 is found to be a positive regulator in litchi pericarp coloration, as it activates the expression of both LcSGR and LcMYB1, linking chlorophyll degradation and anthocyanin biosynthesis.

PLANT PHYSIOLOGY (2023)

Article Plant Sciences

The ABA-induced NAC transcription factor MdNAC1 interacts with a bZIP-type transcription factor to promote anthocyanin synthesis in red-fleshed apples

Wenjun Liu et al.

Summary: In this study, MdNAC1 was identified as a transcription factor that positively regulates anthocyanin synthesis using a yeast-based screening technology. Overexpression of MdNAC1 significantly promoted the accumulation of anthocyanins in apple fruits and calli. Binding experiments showed that MdNAC1 combines with MdbZIP23 to activate the transcription of MdMYB10 and MdUFGT. Additionally, MdNAC1 expression was strongly induced by ABA, and the accumulation of anthocyanins in apple calli increased in the presence of ABA.

HORTICULTURE RESEARCH (2023)

Article Chemistry, Applied

Influence of rootstock genotype on individual metabolic responses and antioxidant potential of blood orange cv. Tarocco Scire`

Giulia Modica et al.

Summary: The study evaluated the impact of rootstock on fruit quality of sweet orange, revealing significant effects of temperature on polyphenol accumulation and antioxidant activity, as well as differences in metabolic profiles of juice among different rootstocks. Additionally, specific rootstocks were found to enhance anthocyanin accumulation in the fruit, providing valuable insights for rootstock selection in new plantings.

JOURNAL OF FOOD COMPOSITION AND ANALYSIS (2022)

Article Plant Sciences

Post-transcriptional gene silencing of the chalcone synthase gene CHS causes corolla lobe-specific whiting of Japanese gentian

Yuka Ohta et al.

Summary: This study reveals the molecular mechanism of stripe bicolor formation in Japanese gentian and identifies post-transcriptional gene silencing of CHS as a specific degradation mechanism of anthocyanin accumulation in corolla lobes.

PLANTA (2022)

Article Plant Sciences

Anthocyanins accumulation analysis of correlated genes by metabolome and transcriptome in green and purple peppers (Capsicum annuum)

Yaning Meng et al.

Summary: By using metabolomics and transcriptomics, this study identified the anthocyanin metabolites and differentially expressed genes in the green and purple fruits of pepper. The unique anthocyanin metabolite, delphin chloride, was found in purple fruits, contributing to the purple color. Several enzymes involved in anthocyanin biosynthesis were also identified, along with transcription factors. A novel differentially expressed gene was discovered, potentially related to MYB transcription factor. Overall, this study provides valuable insights into anthocyanin accumulation and biosynthesis in peppers.

BMC PLANT BIOLOGY (2022)

Review Food Science & Technology

Anthocyanin in blood oranges: a review on postharvest approaches for its enhancement and preservation

Fariborz Habibi et al.

Summary: Anthocyanin concentration is an important quality indicator of blood oranges and can be enhanced through postharvest techniques. Storage at low temperatures can increase anthocyanin content but may also induce chilling injury. This review provides the latest information on regulating anthocyanin levels and preserving pigmentation in blood oranges.

CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION (2022)

Article Horticulture

The joint role of the late anthocyanin biosynthetic UFGT-encoding genes in the flowers and fruits coloration of horticultural plants

Noor Muhammad et al.

Summary: Flower and fruit color is a crucial feature of horticultural plants and is influenced by various internal and external factors. UDP-glucose: flavonoid 3-Oglucosyltransferase (UFGTs) have a major role in the development and production of flower and fruit colors, specifically in the synthesis, acylation, and glucosylation of anthocyanins. This review article summarizes the functions of UFGT encoding genes in pigment formation and emphasizes their joint role with downstream genes in anthocyanin stabilization. The advancement of research on flower and fruit color regulation, focusing on UFGT genes, is discussed, along with the limitations and potential areas for future development in this field.

SCIENTIA HORTICULTURAE (2022)

Article Food Science & Technology

Widely Targeted Metabolomics Profiling Reveals the Effect of Powdery Mildew on Wine Grape Varieties with Different Levels of Tolerance to the Disease

Huan Yu et al.

Summary: This study compares the quality differences in metabolism level between two wine grape varieties with different levels of powdery mildew tolerance. It identifies key metabolites that accumulate after infection with powdery mildew in these grape varieties, including phenolic acids, flavonoids, terpenoids, stilbenes, lipids, nucleotides and derivatives, lignans and coumarins, and quinones. The findings suggest that stilbenes may play a more important role than flavonoids in resisting powdery mildew infection in one of the grape varieties, and the variations of these phenolic compounds after powdery mildew infection might lead to quality difference in the flavors of wine grapes.

FOODS (2022)

Article Horticulture

Genome-Wide Identification, Characterization and Expression Analysis of Mango (Mangifera indica L.) chalcone synthase (CHS) Genes in Response to Light

Haofeng Hu et al.

Summary: Light is an important environmental factor regulating the accumulation of specific metabolites in plants. This study identified 21 CHS genes in mango and found differences in their response to light.

HORTICULTURAE (2022)

Article Biochemistry & Molecular Biology

Low temperature inhibits anthocyanin accumulation in strawberry fruit by activating FvMAPK3-induced phosphorylation of FvMYB10 and degradation of Chalcone Synthase 1

Wenwen Mao et al.

Summary: This study identified FvMAPK3 as a key negative regulator in the poor coloration of strawberry fruits under low temperature, with its activity induced by low temperature and repressing anthocyanin accumulation through multiple mechanisms. These findings not only provide important insights into the molecular mechanisms underlying low-temperature-mediated repression of anthocyanin accumulation in plants, but also offer valuable candidate genes for breeding strawberry varieties with high tolerance to low temperature and good fruit quality.

PLANT CELL (2022)

Article Chemistry, Applied

Blood orange (Citrus sinensis) as a rich source of nutraceuticals: investigation of bioactive compounds in different parts of the fruit by HPLC-PDA/MS

Marina Russo et al.

Summary: This study analyzed the by-products of the red orange industry in Sicily, finding significant amounts of bioactive compounds and dietary fiber. Pulp was identified as the best source of dietary fiber, rich in flavonoids and limonoids, while seeds were the optimal source of limonoids.

NATURAL PRODUCT RESEARCH (2021)

Article Chemistry, Applied

Rootstock effect on fruit quality, anthocyanins, sugars, hydroxycinnamic acids and flavanones content during the harvest of blood oranges 'Moro' and 'Tarocco Rosso' grown in Spain

Julia Morales et al.

Summary: Different rootstocks have significant effects on the physico-chemical quality parameters of 'Moro' and 'Tarocco Rosso' blood oranges, with internal color linked to main anthocyanin content. Sucrose content in fruit varies among rootstocks with different anthocyanin levels, showing a relationship with hydroxycinnamic acids and flavanones content.

FOOD CHEMISTRY (2021)

Article Plant Sciences

Weighted gene coexpression correlation network analysis reveals a potential molecular regulatory mechanism of anthocyanin accumulation under different storage temperatures in 'Friar' plum

Xueling Li et al.

Summary: The study revealed that storage temperature affected the accumulation of anthocyanins in postharvest 'Friar' plum fruit, with the fruit stored at 10 degrees Celsius showing higher levels of anthocyanins, quercetin, and sucrose in the flesh compared to fruit stored at 0 degrees Celsius and 25 degrees Celsius. Transcription factors APL, MYB10, WIN1, bZIP43, and bHLH111 were found to play key roles in regulating the expression of structural genes involved in anthocyanin synthesis, while the sucrose biosynthesis gene SS also contributed to anthocyanin accumulation in plum flesh during storage at 10 degrees Celsius.

BMC PLANT BIOLOGY (2021)

Article Chemistry, Applied

Insight into the pigmented anthocyanins and the major potential co-pigmented flavonoids in purple-coloured leaf teas

Jiang Shi et al.

Summary: Tea cultivars with purple shoots have drawn global attention. A study comparing purple-coloured tea leaves with green-coloured tea leaves found differences in anthocyanins, flavonoids, and other compounds, with the former containing higher levels of certain compounds. This suggests that modified anthocyanins and co-pigmented flavonoids are primarily responsible for the purple colouration of the tea leaves.

FOOD CHEMISTRY (2021)

Article Biochemistry & Molecular Biology

Identification of gene co-expression networks and key genes regulating flavonoid accumulation in apple ( Malus x domestica ) fruit skin

Tiyu Ding et al.

Summary: This study analyzed the transcriptomes of apple fruit skin from different cultivars to understand the molecular mechanisms regulating apple color formation. A co-expression module negatively correlated with anthocyanin accumulation was identified, with a key hub gene, MdMYB28, acting as a negative regulator of anthocyanin biosynthesis.

PLANT SCIENCE (2021)

Review Biotechnology & Applied Microbiology

Can omics deliver temperature resilient ready-to-grow crops?

Ali Raza et al.

Summary: Plants face various stresses including heat stress, chilling stress, and freezing stress due to adverse climate fluctuations. Responses to temperature stress involve complex mechanisms at cellular, molecular, and physiological levels, showcasing the importance of omics technologies in understanding stress adaptation and tolerance mechanisms. Efforts in exploring temperature stress responses in plants are crucial for achieving the goal of zero hunger worldwide.

CRITICAL REVIEWS IN BIOTECHNOLOGY (2021)

Article Plant Sciences

Metabolome and Transcriptome Integration Reveals Insights Into Flavor Formation of 'Crimson' Watermelon Flesh During Fruit Development

Chengsheng Gong et al.

Summary: Metabolites and gene expression during watermelon fruit development were analyzed in this study, revealing molecular insights into flavor formation. The study showed similar trends in the expression of sugars and genes involved in the glycolytic pathway during fruit development.

FRONTIERS IN PLANT SCIENCE (2021)

Article Biochemistry & Molecular Biology

Genomic insight into the divergence and adaptive potential of a forgotten landrace G. hirsutum L. purpurascens

Mian Faisal Nazir et al.

Summary: This study re-evaluates a landrace of Gossypium hirsutum, Gossypium purpurascens, to understand its genomic structure, variation, and breeding potential, providing insights into the biogeographic history and genomic changes associated with domestication. Population fixation statistics and phylogenetic analysis show marked differentiation of G. purpurascens and highlight its conservative nature as a vital source of functional variation for modern cultivars. Genome-wide association results indicate multiple loci associated with domestication regions, particularly for flowering and fiber quality, while also shedding light on the evolutionary process of G. hirsutum.

JOURNAL OF GENETICS AND GENOMICS (2021)

Article Biochemistry & Molecular Biology

Weighted gene co-expression network analysis identifies genes related to anthocyanin biosynthesis and functional verification of hub gene SmWRKY44

Yongjun He et al.

Summary: The study identified the key genes and pathways related to anthocyanin biosynthesis in eggplant through WGCNA analysis and highlighted the significant role of the hub gene SmWRKY44. Research showed that SmWRKY44 interacted with other key genes to promote anthocyanin biosynthesis.

PLANT SCIENCE (2021)

Article Biochemistry & Molecular Biology

Transcriptome and Metabolome Analysis Unveil Anthocyanin Metabolism in Pink and Red Testa of Peanut (Arachis hypogaea L.)

Qiqin Xue et al.

Summary: This study conducted a comprehensive analysis on flavonoid metabolites and related gene expression in peanut testa, revealing the key genes and pathways involved in pigment formation. The findings shed light on the regulatory mechanisms of pigment accumulation in peanut testa.

INTERNATIONAL JOURNAL OF GENOMICS (2021)

Article Biochemistry & Molecular Biology

The NAC transcription factor FaRIF controls fruit ripening in strawberry

Carmen Martin-Pizarro et al.

Summary: This study identified and characterized the ripening inducing factor FaRIF in strawberry, which plays a crucial role in controlling key ripening-related processes such as fruit softening, pigment and sugar accumulation. Functional analyses through stable transgenic lines showed that FaRIF is a key regulator of strawberry fruit ripening from early developmental stages, controlling various metabolic pathways and the balance of aerobic/anaerobic metabolism. This research suggests that FaRIF is a potential target for genetic modifications to enhance the quality of strawberry fruits.

PLANT CELL (2021)

Article Food Science & Technology

Change in taste-altering non-volatile components of blood and common orange fruit during cold storage

Simona Fabroni et al.

FOOD RESEARCH INTERNATIONAL (2020)

Article Biochemistry & Molecular Biology

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

Chengjie Chen et al.

MOLECULAR PLANT (2020)

Article Plant Sciences

Advances in Genomic, Transcriptomic, and Metabolomic Analyses of Fruit Quality in Fruit Crops

Chunmei Zhang et al.

HORTICULTURAL PLANT JOURNAL (2020)

Article Biochemistry & Molecular Biology

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

Jinpu Jin et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Genetics & Heredity

Integrative approaches for large-scale transcriptome-wide association studies

Alexander Gusev et al.

NATURE GENETICS (2016)

Review Agriculture, Multidisciplinary

The State of the Art in Biosynthesis of Anthocyanins and Its Regulation in Pigmented Sweet Oranges [(Citrus sinensis) L. Osbeck]

Angela Roberta Lo Piero

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2015)

Letter Biochemistry & Molecular Biology

Sucrose Induction of Anthocyanin Biosynthesis Is Mediated by DELLA

Yi Li et al.

MOLECULAR PLANT (2014)

Article Agriculture, Multidisciplinary

Assessment of quality-assured Tarocco orange fruit sorting rules by combined physicochemical and sensory testing

Federico Pallottino et al.

JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE (2013)

Review Ecology

Pollinator-mediated evolution of floral signals

Florian P. Schiestl et al.

TRENDS IN ECOLOGY & EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges

Eugenio Butelli et al.

PLANT CELL (2012)

Review Biochemistry & Molecular Biology

Flavanols and Anthocyanins in Cardiovascular Health: A Review of Current Evidence

Sonia de Pascual-Teresa et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2010)

Article Endocrinology & Metabolism

Blood orange juice inhibits fat accumulation in mice

L. Titta et al.

INTERNATIONAL JOURNAL OF OBESITY (2010)

Review Plant Sciences

Berries: Improving Human Health and Healthy Aging, and Promoting Quality Life-A Review

Octavio Paredes-Lopez et al.

PLANT FOODS FOR HUMAN NUTRITION (2010)

Article Horticulture

Citrus rootstock responses to water stress

Juan Rodriguez-Gamir et al.

SCIENTIA HORTICULTURAE (2010)

Article Plant Sciences

Arabidopsis NAC Transcription Factor, ANAC078, Regulates Flavonoid Biosynthesis under High-light

Teruyuki Morishita et al.

PLANT AND CELL PHYSIOLOGY (2009)

Article Chemistry, Medicinal

Chemical composition of blood orange varieties from Turkey: A comparative study

Ebru Kafkas et al.

PHARMACOGNOSY MAGAZINE (2009)

Article Biochemical Research Methods

Analyzing real-time PCR data by the comparative C-T method

Thomas D. Schmittgen et al.

NATURE PROTOCOLS (2008)

Article Biochemistry & Molecular Biology

Weighted gene coexpression network analysis strategies applied to mouse weight

Tova F. Fuller et al.

MAMMALIAN GENOME (2007)

Review Biochemistry & Molecular Biology

Anthocyanins: Structural characteristics that result in unique metabolic patterns and biological activities

Ronald L. Prior et al.

FREE RADICAL RESEARCH (2006)

Article Horticulture

Rootstocks and plant water relations affect sugar accumulation of citrus fruit via osmotic adjustment

GH Barry et al.

JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE (2004)

Review Medicine, Research & Experimental

Potential mechanisms of cancer chemoprevention by anthocyanins

DX Hou

CURRENT MOLECULAR MEDICINE (2003)

Review Pharmacology & Pharmacy

The biochemistry and medical significance of the flavonoids

BH Havsteen

PHARMACOLOGY & THERAPEUTICS (2002)

Article Agriculture, Multidisciplinary

Characterization of major anthocyanins and the color of red-fleshed Budd Blood orange (Citrus sinensis)

HS Lee

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2002)

Article Agriculture, Multidisciplinary

Storage temperature effects on blood orange fruit quality

P Rapisarda et al.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2001)