4.7 Article

Genome-wide investigation and expression profiling of LOR gene family in rapeseed under salinity and ABA stress

Related references

Note: Only part of the references are listed.
Review Biotechnology & Applied Microbiology

Smart reprograming of plants against salinity stress using modern biotechnological tools

Ali Raza et al.

Summary: Climate change leads to various environmental stresses, including soil salinity, which negatively affects agricultural productivity. Plants respond to salinity stress by regulating ion homeostasis, inducing antioxidant defense systems, and producing phytohormones and osmoprotectants. Enhancing salt tolerance in plants is crucial for sustaining global agricultural productivity.

CRITICAL REVIEWS IN BIOTECHNOLOGY (2023)

Article Plant Sciences

Insight into the bZIP gene family in Lagenaria siceraria: Genome and transcriptome analysis to understand gene diversification in Cucurbitaceae and the roles of LsbZIP gene expression and function under cold stress

Jian Wang et al.

Summary: This study identified and characterized the bZIP family in the important edible Cucurbitaceae crop bottle gourd. A total of 65 putative LsbZIP genes were identified and their gene structure, phylogenetic relationships, gene expression profiles, and cold stress-responsive genes were analyzed. The results provide new insights into the transcriptional regulation of bZIP family genes in bottle gourd and their potential functions in cold-tolerant variety breeding.

FRONTIERS IN PLANT SCIENCE (2023)

Review Plant Sciences

Role of phytohormones in regulating cold stress tolerance: Physiological and molecular approaches for developing cold-smart crop plants

Ali Raza et al.

Summary: Global climate variations cause extreme temperatures and reduce crop production, resulting in food insecurity worldwide. Temperature extremes, such as chilling (0-15 degrees C) and freezing (<0 C), severely affect plant growth and physiology. Plants respond to these stresses by activating various endogenous mechanisms, including phytohormone biosynthesis, to tolerate and adapt to stressful environments. This review highlights the importance of phytohormones in regulating plant responses to cold stress and discusses the potential of genetic engineering and omics approaches to develop cold-smart crop plants.

PLANT STRESS (2023)

Review Cell Biology

Plant hormone regulation of abiotic stress responses

Rainer Waadt et al.

Summary: Plant hormones play important roles in abiotic stress responses, regulating gene expression and plant development to adapt and tolerate environmental stresses such as drought and high temperature. Understanding these mechanisms is of great significance for agricultural applications.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2022)

Article Plant Sciences

Genome-wide characterization of NBS-LRR family genes and expression analysis under powdery mildew stress in Lagenaria siceraria

Jian Wang et al.

Summary: In this study, we investigated the NBS-LRR genes in bottle gourd and identified 84 genes categorized into seven subfamilies. Phylogenetic and motif analysis revealed two major clusters of NBS-LRR genes with TIR or coiled-coil domains. We also analyzed duplication events, motif sequences, orthologous gene clusters, protein-protein interactions, and cis-elements. Furthermore, we constructed protein structures and found a significantly up-regulated gene, Lsi04g015960, with the powdery mildew8 (RPW8) domain in PM-resistant variety. This research provides valuable insights into the NBS-LRR family genes in bottle gourd and identifies a potential candidate gene for PM tolerance breeding.

PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY (2022)

Article Agricultural Engineering

Wood vinegar induces salinity tolerance by alleviating oxidative damages and protecting photosystem II in rapeseed cultivars

Junyi Ma et al.

Summary: Wood vinegar is commonly used in agriculture as organic fertilizer and antibacterial agent. This research study shows that pretreatment of wood vinegar can alleviate the inhibitory effects of salt stress on rapeseed cultivation by promoting plant growth, improving photosynthetic efficiency, and maintaining redox balance. The protective mechanism of wood vinegar involves reducing oxidative stress, lipid peroxidation, and improving antioxidant enzyme activities. Furthermore, wood vinegar also regulates the expression of salt transporter genes and reduces the uptake of Na+ in plants under salt stress. This study provides valuable insights into the interaction between wood vinegar and ion homeostasis in plants under salinity stress.

INDUSTRIAL CROPS AND PRODUCTS (2022)

Article Agronomy

Genetic Variation and Stability Analysis of an Artificially Synthesized Allohexaploid Brassica for Breeding Innovations

Su Yang et al.

Summary: This research deepened our understanding of the genetic variation of artificially synthesized allohexaploid Brassica. In addition, the allohexaploid Brassica can be used as a bridge to transfer some of the valuable traits blocked by reproductive barriers from wild Brassica species to cultivated species such as cold and drought resistance, etc.

AGRONOMY-BASEL (2022)

Article Plant Sciences

Association of jasmonic acid priming with multiple defense mechanisms in wheat plants under high salt stress

Mohamed S. S. Sheteiwy et al.

Summary: This study found that jasmonic acid (JA) can enhance wheat plants' resistance to salt stress, improving their growth and yield. JA priming improved key growth indicators such as photosynthetic pigments and stomatal conductance, while reducing chloroplast swelling and thylakoid degradation. Additionally, JA played a role in maintaining ion balance, water content, and water use efficiency, as well as increasing antioxidant levels to combat oxidative stress caused by salt stress.

FRONTIERS IN PLANT SCIENCE (2022)

Article Biochemistry & Molecular Biology

Genome-Wide Identification and Characterization of Soybean GmLOR Gene Family and Expression Analysis in Response to Abiotic Stresses

Yisheng Fang et al.

Summary: The LOR gene family in soybean was investigated in this study, revealing that the genes are divided into eight subgroups located on 14 chromosomes. Most genes contain conserved motifs, with several pairs of tandem and segmental duplicated genes. Different expression patterns were observed among the 36 GmLOR genes in response to abiotic stress, with some showing significant upregulation after PEG and salt treatments, indicating their important roles in improving plant tolerance to abiotic stress.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Plant Sciences

Genome-Wide Identification Reveals That Nicotiana benthamiana Hypersensitive Response (HR)-Like Lesion Inducing Protein 4 (NbHRLI4) Mediates Cell Death and Salicylic Acid-Dependent Defense Responses to Turnip Mosaic Virus

Xinyang Wu et al.

Summary: The study identified NbHRLI4 as an inducer of cell death and an antiviral regulator of TuMV infection through the salicylic acid pathway. Silencing NbHRLI4 increased TuMV accumulation, while overexpression of NbHRLI4 enhanced plant resistance to TuMV, but showed weaker immunity in plants expressing NahG.

FRONTIERS IN PLANT SCIENCE (2021)

Article Biochemistry & Molecular Biology

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

Chengjie Chen et al.

MOLECULAR PLANT (2020)

Article Multidisciplinary Sciences

Genome-wide identification and expression profiling of the YUCCA gene family in Malus domestica

Chunhui Song et al.

SCIENTIFIC REPORTS (2020)

Article Genetics & Heredity

Introns as Gene Regulators: A Brick on the Accelerator

Alan B. Rose

FRONTIERS IN GENETICS (2019)

Article Biotechnology & Applied Microbiology

Genome-wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed

Jun Zou et al.

PLANT BIOTECHNOLOGY JOURNAL (2019)

Article Biochemistry & Molecular Biology

The Pfam protein families database in 2019

Sara El-Gebali et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

HMMER web server: 2018 update

Simon C. Potter et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Plant Sciences

Role of Arabidopsis LOR1 (LURP-one related one) in basal defense against Hyaloperonospora arabidopsidis

Ayesha Baig

PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY (2018)

Article Biochemistry & Molecular Biology

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

Jinpu Jin et al.

NUCLEIC ACIDS RESEARCH (2017)

Review Biochemistry & Molecular Biology

WRKY transcription factors in plant responses to stresses

Jingjing Jiang et al.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2017)

Review Plant Sciences

Evolution of Gene Duplication in Plants

Nicholas Panchy et al.

PLANT PHYSIOLOGY (2016)

Review Plant Sciences

Abiotic and biotic stress combinations

Nobuhiro Suzuki et al.

NEW PHYTOLOGIST (2014)

Article Multidisciplinary Sciences

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

Boulos Chalhoub et al.

SCIENCE (2014)

Article Biochemistry & Molecular Biology

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

Koichiro Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Review Microbiology

Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants

Mohammed Nuruzzaman et al.

FRONTIERS IN MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Yupeng Wang et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Divergence of duplicate genes in exon-intron structure

Guixia Xu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Plant Sciences

Expression profiling and integrative analysis of the CESA/CSL superfamily in rice

Lingqiang Wang et al.

BMC PLANT BIOLOGY (2010)

Article Genetics & Heredity

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

Dapeng Wang et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Circos: An information aesthetic for comparative genomics

Martin Krzywinski et al.

GENOME RESEARCH (2009)

Article Biochemistry & Molecular Biology

MEME SUITE: tools for motif discovery and searching

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

Recent duplications dominate NBS-encoding gene expansion in two woody species

Sihai Yang et al.

MOLECULAR GENETICS AND GENOMICS (2008)

Article Genetics & Heredity

Rapidly regulated genes are intron poor

Daniel C. Jeffares et al.

TRENDS IN GENETICS (2008)

Article Biochemical Research Methods

Clustal W and clustal X version 2.0

M. A. Larkin et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain

Scott William Roy et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

ArabidopsisWRKY70 is required for full RPP4-mediated disease resistance and basal defense against Hyaloperonospora parasitica

Colleen Knoth et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2007)

Article Biotechnology & Applied Microbiology

Effect of 5′UTR introns on gene expression in Arabidopsis thaliana

Betty Y. W. Chung et al.

BMC GENOMICS (2006)

Review Genetics & Heredity

The evolution of spliceosomal introns: patterns, puzzles and progress

SW Roy et al.

NATURE REVIEWS GENETICS (2006)

Article Biochemistry & Molecular Biology

The Genomes of Oryza sativa:: A history of duplications

J Yu et al.

PLOS BIOLOGY (2005)

Review Plant Sciences

Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters

K Yamaguchi-Shinozaki et al.

TRENDS IN PLANT SCIENCE (2005)

Article Multidisciplinary Sciences

Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain

SW Roy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Extent of gene duplication in the genomes of Drosophila, nematode, and yeast

ZL Gu et al.

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Article Multidisciplinary Sciences

The origins of genomic duplications in Arabidopsis

TJ Vision et al.

SCIENCE (2000)