4.7 Article

Random mutagenesis-based screening of the interface of phyllogen, a bacterial phyllody-inducing effector, for interaction with plant MADS-box proteins

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

ColabFold: making protein folding accessible to all

Milot Mirdita et al.

Summary: ColabFold combines fast homology search and optimized model utilization to offer accelerated prediction of protein structures and complexes, with a processing speed that is 40-60 times faster. It serves as a free and accessible platform for protein folding, capable of predicting close to 1,000 structures per day.

NATURE METHODS (2022)

Article Biochemistry & Molecular Biology

A phytoplasma effector acts as a ubiquitin-like mediator between floral MADS-box proteins and proteasome shuttle proteins

Yugo Kitazawa et al.

Summary: Phyllogen, a bacterial effector produced by pathogenic phytoplasma, targets host proteins for proteasomal degradation by mediating their interaction with proteasome shuttle proteins instead of ubiquitin. In this process, RAD23 shuttle proteins recruit ubiquitinated proteins to the proteasome. Phyllogen directly mediates interaction between MTF and RAD23, inducing the proteasomal degradation of MTF.

PLANT CELL (2022)

Article Biochemistry & Molecular Biology

Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants

Rui Yin et al.

Summary: This study explores the use of the AlphaFold deep learning method for predicting protein complex structures from sequences. The results show that AlphaFold can accurately model many transient protein complexes, but it has limitations in modeling antibody-antigen complexes and T cell receptor-antigen complexes.

PROTEIN SCIENCE (2022)

Article Biochemistry & Molecular Biology

Identification and molecular analysis of interaction sites in the MtSEO-F1 protein involved in forisome assembly

Judith Rose et al.

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES (2020)

Article Biochemistry & Molecular Biology

Structural Requirements of the Phytoplasma Effector Protein SAP54 for Causing Homeotic Transformation of Floral Organs

Marc-Benjamin Aurin et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2020)

Review Biochemistry & Molecular Biology

Straightforward Protein-Protein Interaction Interface Mapping via Random Mutagenesis and Mammalian Protein Protein Interaction Trap (MAPPIT)

Laurens Vyncke et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Biochemistry & Molecular Biology

Crystal structure of phyllogen, a phyllody-inducing effector protein of phytoplasma

Nozomu Iwabuchi et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2019)

Review Multidisciplinary Sciences

Molecular and biological properties of phytoplasmas

Shigetou Namba

PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES (2019)

Review Biochemistry & Molecular Biology

Structural Basis for Plant MADS Transcription Factor Oligomerization

Xuelei Lai et al.

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2019)

Article Biochemistry & Molecular Biology

Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen

Kensaku Maejima et al.

PLANT SIGNALING & BEHAVIOR (2015)

Review Agriculture, Multidisciplinary

Molecular biology and pathogenicity of phytoplasmas

C. Marcone

ANNALS OF APPLIED BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Structural Basis for the Oligomerization of the MADS Domain Transcription Factor SEPALLATA3 in Arabidopsis

Sriharsha Puranik et al.

PLANT CELL (2014)

Article Biochemistry & Molecular Biology

Defining subdomains of the K domain important for protein-protein interactions of plant MADS proteins

YZ Yang et al.

PLANT MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

UBA domains of DNA damage-inducible proteins interact with ubiquitin

BL Bertolaet et al.

NATURE STRUCTURAL BIOLOGY (2001)