Related references
Note: Only part of the references are listed.An optimal growth law for RNA composition and its partial implementation through ribosomal and tRNA gene locations in bacterial genomes
Xiao-Pan Hu et al.
PLOS GENETICS (2021)
Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns
Jake L. Weissman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Short-term kinetics of rRNA degradation in Escherichia coli upon starvation for carbon, amino acid or phosphate
Mathias Fessler et al.
MOLECULAR MICROBIOLOGY (2020)
Global mistranslation increases cell survival under stress in Escherichia coli
Laasya Samhita et al.
PLOS GENETICS (2020)
The protein translation machinery is expressed for maximal efficiency in Escherichia coli
Xiao-Pan Hu et al.
NATURE COMMUNICATIONS (2020)
The birth of a bacterial tRNA gene by large-scale, tandem duplication events
Gokce B. Ayan et al.
ELIFE (2020)
Evolutionary Changes after Translational Challenges Imposed by Horizontal Gene Transfer
Stephanie Bedhomme et al.
GENOME BIOLOGY AND EVOLUTION (2019)
Predictive genomic traits for bacterial growth in culture versus actual growth in soil
Junhui Li et al.
ISME JOURNAL (2019)
Transfer RNA instability as a stress response in Escherichia coli: Rapid dynamics of the tRNA pool as a function of demand
Michael Askvad Sorensen et al.
RNA BIOLOGY (2018)
Translational Selection for Speed Is Not Sufficient to Explain Variation in Bacterial Codon Usage Bias
Saurabh Mahajan et al.
GENOME BIOLOGY AND EVOLUTION (2018)
Wobbling Forth and Drifting Back: The Evolutionary History and Impact of Bacterial tRNA Modifications
Gaurav D. Diwan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters
Linwei Wu et al.
ISME JOURNAL (2017)
YAMAT-seq: an efficient method for high-throughput sequencing of mature transfer RNAs
Megumi Shigematsu et al.
NUCLEIC ACIDS RESEARCH (2017)
GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes
Patricia P. Chan et al.
NUCLEIC ACIDS RESEARCH (2016)
Effects of tRNA modification on translational accuracy depend on intrinsic codon-anticodon strength
Nandini Manickam et al.
NUCLEIC ACIDS RESEARCH (2016)
Exploiting rRNA operon copy number to investigate bacterial reproductive strategies
Benjamin R. K. Roller et al.
NATURE MICROBIOLOGY (2016)
Engineered ribosomal RNA operon copy-number variants of E-coli reveal the evolutionary trade-offs shaping rRNA operon number
Zsuzsanna Gyorfy et al.
NUCLEIC ACIDS RESEARCH (2015)
Markerless Escherichia coli rrn Deletion Strains for Genetic Determination of Ribosomal Binding Sites
Selwyn Quan et al.
G3-GENES GENOMES GENETICS (2015)
Controlling translation via modulation of tRNA levels
Jeremy E. Wilusz
WILEY INTERDISCIPLINARY REVIEWS-RNA (2015)
Bacterial transfer RNAs
Jennifer Shepherd et al.
FEMS MICROBIOLOGY REVIEWS (2015)
How Many Initiator tRNA Genes Does Escherichia coli Need?
Laasya Samhita et al.
JOURNAL OF BACTERIOLOGY (2014)
Auxiliary tRNAs: large-scale analysis of tRNA genes reveals patterns of tRNA repertoire dynamics
Naama Wald et al.
NUCLEIC ACIDS RESEARCH (2014)
A Comprehensive tRNA Deletion Library Unravels the Genetic Architecture of the tRNA Pool
Zohar Bloom-Ackermann et al.
PLOS GENETICS (2014)
Predicting the Minimal Translation Apparatus: Lessons from the Reductive Evolution of Mollicutes
Henri Grosjean et al.
PLOS GENETICS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Development of an Optimized Medium, Strain and High-Throughput Culturing Methods for Methylobacterium extorquens
Nigel F. Delaney et al.
PLOS ONE (2013)
tRNA concentration fine tunes protein solubility
Ivan Fedyunin et al.
FEBS LETTERS (2012)
Determinants of translation efficiency and accuracy
Hila Gingold et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Misacylation of specific nonmethionyl tRNAs by a bacterial methionyl-tRNA synthetase
Thomas E. Jones et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Deciphering synonymous codons in the three domains of life: Co-evolution with specific tRNA modification enzymes
Henri Grosjean et al.
FEBS LETTERS (2010)
The Systemic Imprint of Growth and Its Uses in Ecological (Meta) Genomics
Sara Vieira-Silva et al.
PLOS GENETICS (2010)
Evidence That Mutation Is Universally Biased towards AT in Bacteria
Ruth Hershberg et al.
PLOS GENETICS (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
The evolutionary consequences of erroneous protein synthesis
D. Allan Drummond et al.
NATURE REVIEWS GENETICS (2009)
GtRNAdb: a database of transfer RNA genes detected in genomic sequence
Patricia P. Chan et al.
NUCLEIC ACIDS RESEARCH (2009)
Coevolution of Codon Usage and tRNA Genes Leads to Alternative Stable States of Biased Codon Usage
Paul G. Higgs et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Performance of the translational apparatus varies with the ecological strategies of bacteria
Les Dethlefsen et al.
JOURNAL OF BACTERIOLOGY (2007)
The genomic pattern of tDNA operon expression in E-coli
DH Ardell et al.
PLOS COMPUTATIONAL BIOLOGY (2005)
Selective charging of tRNA isoacceptors induced by amino-acid starvation
KA Dittmar et al.
EMBO REPORTS (2005)
Exploring the regulation of tRNA distribution on the genomic scale
KA Dittmar et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Life history implications of rRNA gene copy number in Escherichia coli
BS Stevenson et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization
EPC Rocha
GENOME RESEARCH (2004)
Selective charging of tRNA isoacceptors explains patterns of codon usage
J Elf et al.
SCIENCE (2003)
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
R Edgar et al.
NUCLEIC ACIDS RESEARCH (2002)
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
KA Datsenko et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)