4.6 Article

Providencia alcalifaciens-Assisted Bioremediation of Chromium-Contaminated Groundwater: A Computational Study

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

CATH: increased structural coverage of functional space

Ian Sillitoe et al.

Summary: CATH identifies protein domains in structures and classifies them into evolutionary superfamilies, providing structural and functional annotations. The latest release significantly increases coverage of structural and sequence data, with additional derived data such as predicted sequence domains and functionally coherent sequence subsets. The FunFam generation pipeline has been re-engineered to capture more sequences with increased functional purity and information content.

NUCLEIC ACIDS RESEARCH (2021)

Review Biotechnology & Applied Microbiology

Natural products in drug discovery: advances and opportunities

Atanas G. Atanasov et al.

Summary: Natural products and their analogues have historically played a significant role in pharmacotherapy, however, they also present challenges. Recent technological and scientific developments are addressing these challenges and revitalizing interest in natural products as drug leads, particularly for combating antimicrobial resistance.

NATURE REVIEWS DRUG DISCOVERY (2021)

Article Plant Sciences

The cell wall of green microalgae and its role in heavy metal removal

Olivia Spain et al.

Summary: Heavy metals in industrial wastewaters pose a serious threat to the environment and human health. Microalgae are increasingly being recognized as potential solutions for removing pollutants through biosorption due to their unique cell wall structure. The review focuses on the composition and structure of microalgae cell walls in heavy metal removal, as well as commonly used models to predict the velocity and capacity of biosorption by microalgae.

PHYSIOLOGIA PLANTARUM (2021)

Article Multidisciplinary Sciences

Accurate prediction of protein structures and interactions using a three-track neural network

Minkyung Baek et al.

Summary: Through the three-track network, we achieved accuracies approaching those of DeepMind in CASP14, enabling rapid solution of challenging x-ray crystallography and cryo-electron microscopy structure modeling problems, and providing insights into the functions of proteins with currently unknown structure.

SCIENCE (2021)

Review Environmental Sciences

A review of the formation of Cr(VI) via Cr(III) oxidation in soils and groundwater

Jialiang Liang et al.

Summary: This review discusses the process of Cr(III) oxidation generating Cr(VI) in soils and groundwater, with manganese oxides, hydrogen peroxide, and photochemical generated radicals playing dominant roles under different conditions.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

Review Multidisciplinary Sciences

Toxic metal ions contamination in the groundwater, Kingdom of Saudi Arabia

Imran Ali et al.

JOURNAL OF TAIBAH UNIVERSITY FOR SCIENCE (2020)

Review Biochemistry & Molecular Biology

Protein engineering: the potential of remote mutations

Matthew Wilding et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2019)

Article Biochemistry & Molecular Biology

IntFOLD: an integrated web resource for high performance protein structure and function prediction

Liam J. McGuffin et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Chemistry, Multidisciplinary

Recent bioreduction of hexavalent chromium in wastewater treatment: A review

Debabrata Pradhan et al.

JOURNAL OF INDUSTRIAL AND ENGINEERING CHEMISTRY (2017)

Article Environmental Sciences

Metallothionein assisted periplasmic lead sequestration as lead sulfite by Providencia vermicola strain SJ2A

Jaya Sharma et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2017)

Article Chemistry, Multidisciplinary

Flexible CDOCKER: Development and Application of a Pseudo-Explicit Structure-Based Docking Method Within CHARMM

Jessica K. Gagnon et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2016)

Article Biochemistry & Molecular Biology

Proteopedia: Rossmann fold: A beta-alpha-beta fold at dinucleotide binding sites

Israel Hanukoglu

BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION (2015)

Article Biochemical Research Methods

The Phyre2 web portal for protein modeling, prediction and analysis

Lawrence A. Kelley et al.

NATURE PROTOCOLS (2015)

Article Biochemistry & Molecular Biology

Three-dimensional structure of a sugar N-formyltransferase from Francisella tularensis

Alex L. Zimmer et al.

PROTEIN SCIENCE (2014)

Article Environmental Sciences

Quality assessment of groundwater at south Al Madinah Al Munawarah area, Saudi Arabia

Magdy M. S. El Maghraby et al.

ENVIRONMENTAL EARTH SCIENCES (2013)

Article Microbiology

Biosorption of aluminum, cobalt, and copper ions by Providencia rettgeri isolated from wastewater

Aly E. Abo-Amer et al.

JOURNAL OF BASIC MICROBIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Lead-resistant Providencia alcalifaciens strain 2EA bioprecipitates Pb+2 as lead phosphate

M. M. Naik et al.

LETTERS IN APPLIED MICROBIOLOGY (2013)

Article Microbiology

Biosorption of aluminum, cobalt, and copper ions by Providencia rettgeri isolated from wastewater

Aly E. Abo-Amer et al.

JOURNAL OF BASIC MICROBIOLOGY (2013)

Review Environmental Sciences

Remediation of chromium contaminants using bacteria

P. Kanmani et al.

INTERNATIONAL JOURNAL OF ENVIRONMENTAL SCIENCE AND TECHNOLOGY (2012)

Article Multidisciplinary Sciences

Crystal Structure of ChrR-A Quinone Reductase with the Capacity to Reduce Chromate

Subramaniam Eswaramoorthy et al.

PLOS ONE (2012)

Review Chemistry, Medicinal

Chromium in Drinking Water: Sources, Metabolism, and Cancer Risks

Anatoly Zhitkovich

CHEMICAL RESEARCH IN TOXICOLOGY (2011)

Article Biochemical Research Methods

I-TASSER: a unified platform for automated protein structure and function prediction

Ambrish Roy et al.

NATURE PROTOCOLS (2010)

Article Biochemistry & Molecular Biology

Database resources of the National Center for Biotechnology Information

Eric W. Sayers et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens

Aarti Garg et al.

BMC BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins

Markus Wiederstein et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

Achieving 80% ten-fold cross-validated accuracy for secondary structure prediction by large-scale training

Ofer Dor et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemical Research Methods

Protein structural motif prediction in multidimensional φ-ψ space leads to improved secondary structure prediction

Catherine Mooney et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Hexavalent chromium reduction by Providencia sp.

Urvashi Thacker et al.

PROCESS BIOCHEMISTRY (2006)

Article Biochemical Research Methods

Porter: a new, accurate server for protein secondary structure prediction

G Pollastri et al.

BIOINFORMATICS (2005)

Article Biotechnology & Applied Microbiology

Chromate-reducing properties of soluble Flavoproteins from Pseudomonas putida and Escherichia coli

DF Ackerley et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)

Article Biochemistry & Molecular Biology

Can correct protein models be identified?

B Wallner et al.

PROTEIN SCIENCE (2003)

Article Biochemistry & Molecular Biology

Structure validation by Cα geometry:: φ,ψ and Cβ deviation

SC Lovell et al.

PROTEINS-STRUCTURE FUNCTION AND GENETICS (2003)

Article Biochemical Research Methods

Geno3D: automatic comparative molecular modelling of protein

C Combet et al.

BIOINFORMATICS (2002)

Article Biotechnology & Applied Microbiology

Enzymatic reduction of chromate: comparative studies using sulfate reducing bacteria - Key role of polyheme cytochromes c and hydrogenases

C Michel et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2001)

Article Biochemical Research Methods

MaxSub: an automated measure for the assessment of protein structure prediction quality

N Siew et al.

BIOINFORMATICS (2000)