Related references
Note: Only part of the references are listed.Microbial function and genital inflammation in young South African women at high risk of HIV infection
Arghavan Alisoltani et al.
MICROBIOME (2020)
pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework
Hao Yang et al.
BIOINFORMATICS (2019)
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Yasset Perez-Riverol et al.
NUCLEIC ACIDS RESEARCH (2019)
Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?
Thilo Muth et al.
BRIEFINGS IN BIOINFORMATICS (2018)
PeptideMapper: efficient and versatile amino acid sequence and tag mapping
Dominik Kopczynski et al.
BIOINFORMATICS (2017)
Global Change and the Soil Microbiome: A Human-Health Perspective
Raul Ochoa-Hueso
FRONTIERS IN ECOLOGY AND EVOLUTION (2017)
A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics
Haixu Tang et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
The impact of sequence database choice on metaproteomic results in gut microbiota studies
Alessandro Tanca et al.
MICROBIOME (2016)
MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota
Xu Zhang et al.
MICROBIOME (2016)
Mass spectrometrists should search only for peptides they care about
William Stafford Noble
NATURE METHODS (2015)
Navigating through metaproteomics data: A logbook of database searching
Thilo Muth et al.
PROTEOMICS (2015)
DeNovoGUI: An Open Source Graphical User Interface for de Novo Sequencing of Tandem Mass Spectra
Thilo Muth et al.
JOURNAL OF PROTEOME RESEARCH (2014)
pNovo+: De Novo Peptide Sequencing Using Complementary HCD and ETD Tandem Mass Spectra
Hao Chi et al.
JOURNAL OF PROTEOME RESEARCH (2013)
Deep Coverage of the Escherichia coli Proteome Enables the Assessment of False Discovery Rates in Simple Proteogenomic Experiments
Karsten Krug et al.
MOLECULAR & CELLULAR PROTEOMICS (2013)
Evaluating the Impact of Different Sequence Databases on Metaproteome Analysis: Insights from a Lab-Assembled Microbial Mixture
Alessandro Tanca et al.
PLOS ONE (2013)
A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies
Pratik Jagtap et al.
PROTEOMICS (2013)
Unipept: Tryptic Peptide-Based Biodiversity Analysis of Metaproteome Samples
Bart Mesuere et al.
JOURNAL OF PROTEOME RESEARCH (2012)
compomics-utilities: an open-source Java library for computational proteomics
Harald Barsnes et al.
BMC BIOINFORMATICS (2011)
Posterior error probabilities and false discovery rates: Two sides of the same coin
Lukas Kaell et al.
JOURNAL OF PROTEOME RESEARCH (2008)
DirecTag: Accurate sequence tags from peptide MS/MS through statistical scoring
David L. Tabb et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors
Boris L. Zybailov et al.
MOLECULAR BIOSYSTEMS (2007)
InsPecT: Identification of posttransiationally modified peptides from tandem mass spectra
S Tanner et al.
ANALYTICAL CHEMISTRY (2005)