Related references
Note: Only part of the references are listed.Reorganization of 3D genome architecture across wild boar and Bama pig adipose tissues
Jiaman Zhang et al.
JOURNAL OF ANIMAL SCIENCE AND BIOTECHNOLOGY (2022)
The relationship between genome structure and function
A. Marieke Oudelaar et al.
NATURE REVIEWS GENETICS (2021)
Topologically associating domain boundaries that are stable across diverse cell types are evolutionarily constrained and enriched for heritability
Evonne McArthur et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2021)
Importance of the pig as a human biomedical model
Joan K. Lunney et al.
SCIENCE TRANSLATIONAL MEDICINE (2021)
Decreased caveolae in AGPAT2 lacking adipocytes is independent of changes in cholesterol or sphingolipid levels: A whole cell and plasma membrane lipidomic analysis of adipogenesis
Lila Gonzalez-Hodar et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2021)
Genome-wide enhancer maps link risk variants to disease genes
Joseph Nasser et al.
NATURE (2021)
Insights into cold tolerance in sable (Martes zibellina) from the adaptive evolution of lipid metabolism
Tian Xia et al.
MAMMALIAN BIOLOGY (2021)
Topological isolation of developmental regulators in mammalian genomes
Hua-Jun Wu et al.
NATURE COMMUNICATIONS (2021)
A pig BodyMap transcriptome reveals diverse tissue physiologies and evolutionary dynamics of transcription
Long Jin et al.
NATURE COMMUNICATIONS (2021)
Reference Transcriptomes of Porcine Peripheral Immune Cells Created Through Bulk and Single-Cell RNA Sequencing
Juber Herrera-Uribe et al.
FRONTIERS IN GENETICS (2021)
Insulin Sensitivity Is Retained in Mice with Endothelial Loss of Carcinoembryonic Antigen Cell Adhesion Molecule 1
Harrison T. Muturi et al.
CELLS (2021)
Formation of thermogenic adipocytes: What we have learned from pigs
Jianguo Zhao et al.
FUNDAMENTAL RESEARCH (2021)
The Iberian pig fed with high-fat diet: a model of renal disease in obesity and metabolic syndrome
Rosa Rodriguez Rodriguez et al.
INTERNATIONAL JOURNAL OF OBESITY (2020)
On the existence and functionality of topologically associating domains
Jonathan A. Beagan et al.
NATURE GENETICS (2020)
Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2
Arya Kaul et al.
NATURE PROTOCOLS (2020)
Mitoregulin Controls β-Oxidation in Human and Mouse Adipocytes
Max Friesen et al.
STEM CELL REPORTS (2020)
Diploid genome architecture revealed by multi-omic data of hybrid mice
Zhijun Han et al.
GENOME RESEARCH (2020)
Absence of AGPAT2 impairs brown adipogenesis, increases IFN stimulated gene expression and alters mitochondrial morphology
Pablo J. Tapia et al.
METABOLISM-CLINICAL AND EXPERIMENTAL (2020)
Identification of DNA response elements regulating expression of CCAAT/enhancer-binding protein (C/EBP) β and δ and MAP kinase-interacting kinases during early adipogenesis
James E. Merrett et al.
ADIPOCYTE (2020)
Genome-Wide Identification of Histone Modifications Involved in Placental Development in Pigs
Kun Han et al.
FRONTIERS IN GENETICS (2019)
Cell-Type Heterogeneity in Adipose Tissue Is Associated with Complex Traits and Reveals Disease-Relevant Cell-Specific eQTLs
Craig A. Glastonbury et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2019)
C-InterSecture-a computational tool for interspecies comparison of genome architecture
M. Nuriddinov et al.
BIOINFORMATICS (2019)
Determining cell type abundance and expression from bulk tissues with digital cytometry
Aaron M. Newman et al.
NATURE BIOTECHNOLOGY (2019)
Long-range enhancer-promoter contacts in gene expression control
Stefan Schoenfelder et al.
NATURE REVIEWS GENETICS (2019)
Principles of genome folding into topologically associating domains
Quentin Szabo et al.
SCIENCE ADVANCES (2019)
Loss of transglutaminase 2 sensitizes for diet-induced obesity-related inflammation and insulin resistance due to enhanced macrophage c-Src signaling
Tibor Saghy et al.
CELL DEATH & DISEASE (2019)
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
Yingyao Zhou et al.
NATURE COMMUNICATIONS (2019)
Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells
Yanxiao Zhang et al.
NATURE GENETICS (2019)
Age-Appropriateness of Porcine Models Used for Cell Transplantation
Shugo Tohyama et al.
CELL TRANSPLANTATION (2019)
The importance of the nuclear positioning of the PPARG gene for its expression during porcine in vitro adipogenesis
Joanna Stachecka et al.
CHROMOSOME RESEARCH (2019)
Association of common polymorphisms in IL-6 and IL6ST genes with levels of inflammatory markers and coronary stenosis
Marina V. Klimushina et al.
META GENE (2019)
Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression
Camille Berthelot et al.
NATURE ECOLOGY & EVOLUTION (2018)
Quantifying the similarity of topological domains across normal and cancer human cell types
Natalie Sauerwald et al.
BIOINFORMATICS (2018)
Transposable elements generate regulatory novelty in a tissue-specific fashion
Marco Trizzino et al.
BMC GENOMICS (2018)
Anatomical, Physiological, and Functional Diversity of Adipose Tissue
Rachel K. Zwick et al.
CELL METABOLISM (2018)
Transcription factor 21 (TCF21) promotes proinflammatory interleukin 6 expression and extracellular matrix remodeling in visceral adipose stem cells
Takeshi Akama et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2018)
Animal models of obesity and diabetes mellitus
Maximilian Kleinert et al.
NATURE REVIEWS ENDOCRINOLOGY (2018)
Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data
Yang Yang et al.
CELL SYSTEMS (2018)
Decoding topologically associating domains with ultra-low resolution Hi-C data by graph structural entropy
Angsheng Li et al.
NATURE COMMUNICATIONS (2018)
Integration of human adipocyte chromosomal interactions with adipose gene expression prioritizes obesity-related genes from GWAS (vol 9, 1512, 2018)
David Z. Pan et al.
NATURE COMMUNICATIONS (2018)
Comparison of computational methods for the identification of topologically associating domains
Marie Zufferey et al.
GENOME BIOLOGY (2018)
HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
Tao Yang et al.
GENOME RESEARCH (2017)
Evolutionarily Conserved Principles Predict 3D Chromatin Organization
M. Jordan Rowley et al.
MOLECULAR CELL (2017)
Reconstitution of UCP1 using CRISPR/Cas9 in the white adipose tissue of pigs decreases fat deposition and improves thermogenic capacity
Qiantao Zheng et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains
Gil Ron et al.
Nature Communications (2017)
Comparative transcriptome analysis reveals potentially novel roles of Homeobox genes in adipose deposition in fat-tailed sheep
Danju Kang et al.
SCIENTIFIC REPORTS (2017)
Inactivation of thermogenic UCP1 as a historical contingency in multiple placental mammal clades
Michael J. Gaudry et al.
SCIENCE ADVANCES (2017)
IRX3 Promotes the Browning ofWhite Adipocytes and Its Rare Variants are Associated with Human Obesity Risk
Yaoyu Zou et al.
EBIOMEDICINE (2017)
miniMDS: 3D structural inference from high-resolution Hi-C data
Lila Rieber et al.
BIOINFORMATICS (2017)
The role of genetically engineered pigs in xenotransplantation research
David K. C. Cooper et al.
JOURNAL OF PATHOLOGY (2016)
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
Anthony Mathelier et al.
NUCLEIC ACIDS RESEARCH (2016)
Effects of Moderate and Subsequent Progressive Weight Loss on Metabolic Function and Adipose Tissue Biology in Humans with Obesity
Faidon Magkos et al.
CELL METABOLISM (2016)
The Adipose Tissue Microenvironment Regulates Depot-Specific Adipogenesis in Obesity
Elise Jeffery et al.
Cell Metabolism (2016)
A long-term high-fat, high-sucrose diet in Barna minipigs promotes lipid deposition and amyotrophy by up-regulating the myostatin pathway
Jinxue Ruan et al.
MOLECULAR AND CELLULAR ENDOCRINOLOGY (2016)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
Comparative aspects of rodent and nonrodent animal models for mechanistic and translational diabetes research
Simone Renner et al.
THERIOGENOLOGY (2016)
Emerging Complexities in Adipocyte Origins and Identity
Joan Sanchez-Gurmaches et al.
TRENDS IN CELL BIOLOGY (2016)
Obesogenic memory can confer long-term increases in adipose tissue but not liver inflammation and insulin resistance after weight loss
J. Schmitz et al.
MOLECULAR METABOLISM (2016)
AGPAT2 is essential for postnatal development and maintenance of white and brown adipose tissue
Kelly M. Cautivo et al.
MOLECULAR METABOLISM (2016)
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Neva C. Durand et al.
CELL SYSTEMS (2016)
Relationships between Rodent white Adipose Fat Pads and Human white Adipose Fat Depots
Daniella E. Chusyd et al.
FRONTIERS IN NUTRITION (2016)
Enhancer Evolution across 20 Mammalian Species
Diego Villar et al.
CELL (2015)
CD28 deletion improves obesity-induced liver steatosis but increases adiposity in mice
M. Poggi et al.
INTERNATIONAL JOURNAL OF OBESITY (2015)
Condensin-driven remodelling of X chromosome topology during dosage compensation
Emily Crane et al.
NATURE (2015)
Adipose Tissue Remodeling in a Novel Domestic Porcine Model of Diet-Induced Obesity
Aditya S. Pawar et al.
OBESITY (2015)
The phenotype of a flavin-containing monooyxgenase knockout mouse implicates the drug-metabolizing enzyme FMO1 as a novel regulator of energy balance
Sunil Veeravalli et al.
BIOCHEMICAL PHARMACOLOGY (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
What We Talk About When We Talk About Fat
Evan D. Rosen et al.
CELL (2014)
On the Evolutionary Origins of Obesity: A New Hypothesis
Dyan Sellayah et al.
ENDOCRINOLOGY (2014)
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
Ferhat Ay et al.
GENOME RESEARCH (2014)
Visceral and subcutaneous fat have different origins and evidence supports a mesothelial source
You-Ying Chau et al.
NATURE CELL BIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
Jakob Loven et al.
CELL (2013)
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte et al.
CELL (2013)
Super-Enhancers in the Control of Cell Identity and Disease
Denes Hnisz et al.
CELL (2013)
Mechanisms and Metabolic Implications of Regional Differences among Fat Depots
Tamara Tchkonia et al.
CELL METABOLISM (2013)
Human but Not Mouse Adipogenesis Is Critically Dependent on LMO3
Josefine Lindroos et al.
CELL METABOLISM (2013)
Tracking adipogenesis during white adipose tissue development, expansion and regeneration
Qiong A. Wang et al.
NATURE MEDICINE (2013)
Widespread Divergence of the CEACAM/PSG Genes in Vertebrates and Humans Suggests Sensitivity to Selection
Chia Lin Chang et al.
PLOS ONE (2013)
SHARPIN is a key regulator of immune and inflammatory responses
Zhe Wang et al.
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE (2012)
How selective sweeps in domestic animals provide new insight into biological mechanisms
L. Andersson
JOURNAL OF INTERNAL MEDICINE (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
Evolution of genetic and genomic features unique to the human lineage
Majesta O'Bleness et al.
NATURE REVIEWS GENETICS (2012)
Beyond the body mass index: tracking body composition in the pathogenesis of obesity and the metabolic syndrome
M. J. Mueller et al.
OBESITY REVIEWS (2012)
Dichotomous effects of VEGF-A on adipose tissue dysfunction
Kai Sun et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Mitochondrial dysfunction in white adipose tissue
Christine M. Kusminski et al.
TRENDS IN ENDOCRINOLOGY AND METABOLISM (2012)
Uncoupling protein-2 (UCP2) gene expression in subcutaneous and omental adipose tissue of Asian Indians Relationship to adiponectin and parameters of metabolic syndrome
Sujata R. Mahadik et al.
ADIPOCYTE (2012)
Preferential Fat Deposition in Subcutaneous Versus Visceral Depots Is Associated with Insulin Sensitivity
Tracey McLaughlin et al.
JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM (2011)
The evolution of gene expression levels in mammalian organs
David Brawand et al.
NATURE (2011)
Using brown adipose tissue to treat obesity - the central issue
Andrew J. Whittle et al.
TRENDS IN MOLECULAR MEDICINE (2011)
Testing the Ortholog Conjecture with Comparative Functional Genomic Data from Mammals
Nathan L. Nehrt et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Origins, evolution, and phenotypic impact of new genes
Henrik Kaessmann
GENOME RESEARCH (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Role of Insulin-Like Growth Factor-Binding Protein 5 (IGFBP5) in Organismal and Pancreatic beta-Cell Growth
Catherine E. Gleason et al.
MOLECULAR ENDOCRINOLOGY (2010)
Subcutaneous and visceral adipose tissue: structural and functional differences
M. Mohsen Ibrahim
OBESITY REVIEWS (2010)
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
Chongzhi Zang et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Liver Is the Site of Splanchnic Cortisol Production in Obese Nondiabetic Humans
Rita Basu et al.
DIABETES (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Alternative M2 activation of Kupffer cells by PPARδ ameliorates obesity-induced insulin resistance
Justin I. Odegaard et al.
CELL METABOLISM (2008)
PPARγ and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale
Martina I. Lefterova et al.
GENES & DEVELOPMENT (2008)
Global burden of obesity in 2005 and projections to 2030
T. Kelly et al.
INTERNATIONAL JOURNAL OF OBESITY (2008)
A polymorphism at the IL6ST (gp130) locus is associated with traits of the metabolic syndrome
Lucia Gottardo et al.
OBESITY (2008)
SREBPs: the crossroads of physiological and pathological lipid homeostasis
Rajendra Raghow et al.
TRENDS IN ENDOCRINOLOGY AND METABOLISM (2008)
Fasting-induced increases in aquaporin 7 and adipose triglyceride lipase mRNA expression in adipose tissue are attenuated by peroxisome proliferator-activated receptor a deficiency
C. G. Walker et al.
INTERNATIONAL JOURNAL OF OBESITY (2007)
Separation of human adipocytes by size:: hypertrophic fat cells display distinct gene expression
Margareta Jernas et al.
FASEB JOURNAL (2006)
CAFE: a computational tool for the study of gene family evolution
T De Bie et al.
BIOINFORMATICS (2006)
A novel gene family NBPF: Intricate structure generated by gene duplications during primate evolution
K Vandepoele et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
AGPAT2 is mutated in congenital generalized lipodystrophy linked to chromosome 9q34
AK Agarwal et al.
NATURE GENETICS (2002)
Human aquaporin adipose (AQPap) gene - Genomic structure, promoter analysis and functional mutation
H Kondo et al.
EUROPEAN JOURNAL OF BIOCHEMISTRY (2002)
Adipose cell apoptosis: death in the energy depot
A Sorisky et al.
INTERNATIONAL JOURNAL OF OBESITY (2000)
Share Paper
