Related references
Note: Only part of the references are listed.Dissemination of antibiotics through the wastewater-soil-plant- earthworm continuum
Daniel J. Ashworth et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2023)
MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes
Carlos A. Ruiz-Perez et al.
BMC BIOINFORMATICS (2021)
PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data
Laura de Nies et al.
MICROBIOME (2021)
Livestock Manure Type Affects Microbial Community Composition and Assembly During Composting
Jinxin Wan et al.
FRONTIERS IN MICROBIOLOGY (2021)
Antibiotics and Antibiotic Resistance Genes in Animal Manure - Consequences of Its Application in Agriculture
Magdalena Zalewska et al.
FRONTIERS IN MICROBIOLOGY (2021)
Antibiotic resistance genes, class 1 integrons, and IncP-1/IncQ-1 plasmids in irrigation return flows
Robert S. Dungan et al.
ENVIRONMENTAL POLLUTION (2020)
Metagenomics-based evaluation of groundwater microbial profiles in response to treated wastewater discharge
Noor Zaouri et al.
ENVIRONMENTAL RESEARCH (2020)
From Genes to Nitrogen Removal: Determining the Impacts of Poultry Industry Wastewater on Tidal Creek Denitrification
Miguel Semedo et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2020)
Antimicrobial use and resistance in food-producing animals and the environment: an African perspective
Zuhura I. Kimera et al.
ANTIMICROBIAL RESISTANCE AND INFECTION CONTROL (2020)
Improved Metagenomic Taxonomic Profiling Using a Curated Core Gene-Based Bacterial Database Reveals Unrecognized Species in the Genus Streptococcus
Mauricio Chalita et al.
PATHOGENS (2020)
Antibiotic resistance genes from livestock waste: occurrence, dissemination, and treatment
Ya He et al.
NPJ CLEAN WATER (2020)
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Rene S. Hendriksen et al.
NATURE COMMUNICATIONS (2019)
Effects of Dairy Manure-Based Amendments and Soil Texture on Lettuce- and Radish-Associated Microbiota and Resistomes
Giselle K. P. Guron et al.
MSPHERE (2019)
Resistome metagenomics from plate to farm: The resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm
Korin Eckstrom et al.
PLOS ONE (2019)
VFDB 2019: a comparative pathogenomic platform with an interactive web interface
Bo Liu et al.
NUCLEIC ACIDS RESEARCH (2019)
Distinct consequences of amoxicillin and ertapenem exposure in the porcine gut microbiome
Sheila Connelly et al.
ANAEROBE (2018)
Tracking antibiotic resistance genes in soil irrigated with dairy wastewater
Robert S. Dungan et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2018)
Antibiotic Effects on Microbial Communities Responsible for Denitrification and N2O Production in Grassland Soils
Miguel Semedo et al.
FRONTIERS IN MICROBIOLOGY (2018)
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
Seok-Hwan Yoon et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)
Editorial: Genetics of Acquired Antimicrobial Resistance in Animal and Zoonotic Pathogens
Axel Cloeckaert et al.
FRONTIERS IN MICROBIOLOGY (2017)
Effects of multiple antibiotics exposure on denitrification process in the Yangtze Estuary sediments
Guoyu Yin et al.
CHEMOSPHERE (2017)
Comparative metagenomics reveals a diverse range of antimicrobial resistance genes in effluents entering a river catchment
Will Rowe et al.
WATER SCIENCE AND TECHNOLOGY (2016)
Development of SYN-004, an oral beta-lactamase treatment to protect the gut microbiome from antibiotic-mediated damage and prevent Clostridium difficile infection
Michael Kaleko et al.
ANAEROBE (2016)
Reducing antibiotic resistance genes, integrons, and pathogens in dairy manure by continuous thermophilic composting
Xun Qian et al.
BIORESOURCE TECHNOLOGY (2016)
Long-term field application of sewage sludge increases the abundance of antibiotic resistance genes in soil
Qinglin Chen et al.
ENVIRONMENT INTERNATIONAL (2016)
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
Minoru Kanehisa et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
Cross-talk among flesh-eating Aeromonas hydrophila strains in mixed infection leading to necrotizing fasciitis
Duraisamy Ponnusamy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Bacterial community dynamics in surface flow constructed wetlands for the treatment of swine waste
A. M. Ibekwe et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2016)
Detection of Poly- and Perfluoroalkyl Substances (PFASs) in US Drinking Water Linked to Industrial Sites, Military Fire Training Areas, and Wastewater Treatment Plants
Xindi C. Hu et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY LETTERS (2016)
Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems
Noelle R. Noyes et al.
SCIENTIFIC REPORTS (2016)
Abundance of Antibiotic Resistance Genes in Bacteriophage following Soil Fertilization with Dairy Manure or Municipal Biosolids, and Evidence for Potential Transduction
Joseph Ross et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Bacteriophage-mediated spread of bacterial virulence genes
Jose R. Penades et al.
CURRENT OPINION IN MICROBIOLOGY (2015)
Antibiotic Resistome and Its Association with Bacterial Communities during Sewage Sludge Composting
Jian-Qiang Su et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Global trends in antimicrobial use in food animals
Thomas P. Van Boeckel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
New Insights into Dissemination and Variation of the Health Care-Associated Pathogen Acinetobacter baumannii from Genomic Analysis (vol 5, e00963, 2014)
Meredith S. Wright et al.
MBIO (2015)
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
Dongwan D. Kang et al.
PEERJ (2015)
The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria
Joseph Nesme et al.
ENVIRONMENTAL MICROBIOLOGY (2015)
Antimicrobial-Resistant Bacterial Populations and Antimicrobial Resistance Genes Obtained from Environments Impacted by Livestock and Municipal Waste
Getahun E. Agga et al.
PLOS ONE (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Evolution of community- and healthcare-associated methicillin-resistant Staphylococcus aureus
Anne-Catrin Uhlemann et al.
INFECTION GENETICS AND EVOLUTION (2014)
Bacterial phylogeny structures soil resistomes across habitats
Kevin J. Forsberg et al.
NATURE (2014)
Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing
Nur A. Hasan et al.
PLOS ONE (2014)
Bloom of resident antibiotic-resistant bacteria in soil following manure fertilization
Nikolina Udikovic-Kolic et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Transfer of antibiotic resistance plasmids in pure and activated sludge cultures in the presence of environmentally representative micro-contaminant concentrations
Sungpyo Kim et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2014)
Diverse Antibiotic Resistance Genes in Dairy Cow Manure
Fabienne Wichmann et al.
MBIO (2014)
Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India
Johan Bengtsson-Palme et al.
Frontiers in Microbiology (2014)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
Diverse and abundant antibiotic resistance genes in Chinese swine farms
Yong-Guan Zhu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Mobile Genetic Element SCCmec-encoded psm-mec RNA Suppresses Translation of agrA and Attenuates MRSA Virulence
Chikara Kaito et al.
PLOS PATHOGENS (2013)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Distribution and Quantification of Antibiotic Resistant Genes and Bacteria across Agricultural and Non-Agricultural Metagenomes
Lisa M. Durso et al.
PLOS ONE (2012)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Share Paper
