Related references
Note: Only part of the references are listed.De novo protein fold design through sequence-independent fragment assembly simulations
Robin Pearce et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2023)
Deep Reinforcement Learning for Autonomous Driving: A Survey
B. Ravi Kiran et al.
IEEE TRANSACTIONS ON INTELLIGENT TRANSPORTATION SYSTEMS (2022)
Design of protein-binding proteins from the target structure alone
Longxing Cao et al.
NATURE (2022)
Scaffolding protein functional sites using deep learning
Jue Wang et al.
SCIENCE (2022)
Discovering faster matrix multiplication algorithms with reinforcement learning
Alhussein Fawzi et al.
NATURE (2022)
Hallucinating symmetric protein assemblies
B. I. M. Wicky et al.
SCIENCE (2022)
Robust deep learning-based protein sequence design using ProteinMPNN
J. Dauparas et al.
SCIENCE (2022)
Safety and immunogenicity of a SARS-CoV-2 recombinant protein nanoparticle vaccine (GBP510) adjuvanted with AS03: A randomised, placebo-controlled, observer-blinded phase 1/2 trial
Joon Young Song et al.
ECLINICALMEDICINE (2022)
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
Eric F. Pettersen et al.
PROTEIN SCIENCE (2021)
F-domain valency determines outcome of signaling through the angiopoietin pathway
Yan Ting Zhao et al.
EMBO REPORTS (2021)
Design of biologically active binary protein 2D materials
Ariel J. Ben-Sasson et al.
NATURE (2021)
Practical considerations for using K3 cameras in CDS mode for high-resolution and high-throughput single particle cryo-EM
Ming Sun et al.
JOURNAL OF STRUCTURAL BIOLOGY (2021)
Design of functionalised circular tandem repeat proteins with longer repeat topologies and enhanced subunit contact surfaces
Jazmine P. Hallinan et al.
COMMUNICATIONS BIOLOGY (2021)
Adjuvanting a subunit COVID-19 vaccine to induce protective immunity
Prabhu S. Arunachalam et al.
NATURE (2021)
Quadrivalent influenza nanoparticle vaccines induce broad protection
Seyhan Boyoglu-Barnum et al.
NATURE (2021)
Designed proteins assemble antibodies into modular nanocages
Robby Divine et al.
SCIENCE (2021)
Design of multi-scale protein complexes by hierarchical building block fusion
Yang Hsia et al.
NATURE COMMUNICATIONS (2021)
Protein Assembly by Design
Jie Zhu et al.
CHEMICAL REVIEWS (2021)
Highly accurate protein structure prediction with AlphaFold
John Jumper et al.
NATURE (2021)
Improved protein structure prediction using predicted interresidue orientations
Jianyi Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Modular repeat protein sculpting using rigid helical junctions
T. J. Brunette et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens
George Ueda et al.
ELIFE (2020)
Elicitation of Potent Neutralizing Antibody Responses by Designed Protein Nanoparticle Vaccines for SARS-CoV-2
Alexandra C. Walls et al.
CELL (2020)
Optical Pooled Screens in Human Cells
David Feldman et al.
CELL (2019)
Computational design of self-assembling cyclic protein homo-oligomers
Jorge A. Fallas et al.
NATURE CHEMISTRY (2017)
Mastering the game of Go without human knowledge
David Silver et al.
NATURE (2017)
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
Ali Punjani et al.
NATURE METHODS (2017)
Global analysis of protein folding using massively parallel design, synthesis, and testing
Gabriel J. Rocklin et al.
SCIENCE (2017)
Opposing actions of angiopoietin-2 on Tie2 signaling and FOXO1 activation
Minah Kim et al.
JOURNAL OF CLINICAL INVESTIGATION (2016)
Design of a hyperstable 60-subunit protein icosahedron
Yang Hsia et al.
NATURE (2016)
Designed proteins induce the formation of nanocage-containing extracellular vesicles
Jorg Votteler et al.
NATURE (2016)
Mastering the game of Go with deep neural networks and tree search
David Silver et al.
NATURE (2016)
Design of structurally distinct proteins using strategies inspired by evolution
T. M. Jacobs et al.
SCIENCE (2016)
Accurate design of megadalton-scale two-component icosahedral protein complexes
Jacob B. Bale et al.
SCIENCE (2016)
Amelioration of sepsis by TIE2 activation-induced vascular protection
Sangyeul Han et al.
SCIENCE TRANSLATIONAL MEDICINE (2016)
Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta
Ray Yu-Ruei Wang et al.
ELIFE (2016)
Human-level control through deep reinforcement learning
Volodymyr Mnih et al.
NATURE (2015)
EMRinger: side chain directed model and map validation for 3D cryo-electron microscopy
Benjamin A. Barad et al.
NATURE METHODS (2015)
Design of ordered two-dimensional arrays mediated by noncovalent protein-protein interfaces
Shane Gonen et al.
SCIENCE (2015)
Flow Cytometry Reveals that H5N1 Vaccination Elicits Cross-Reactive Stem-Directed Antibodies from Multiple Ig Heavy-Chain Lineages
James R. R. Whittle et al.
JOURNAL OF VIROLOGY (2014)
Accurate design of co-assembling multi-component protein nanomaterials
Neil P. King et al.
NATURE (2014)
Structure of a designed protein cage that self-assembles into a highly porous cube
Yen-Ting Lai et al.
NATURE CHEMISTRY (2014)
Relaxation of backbone bond geometry improves protein energy landscape modeling
Patrick Conway et al.
PROTEIN SCIENCE (2014)
A Pareto-Optimal Refinement Method for Protein Design Scaffolds
Lucas Gregorio Nivon et al.
PLOS ONE (2013)
High-Resolution Comparative Modeling with RosettaCM
Yifan Song et al.
STRUCTURE (2013)
Principles for designing ideal protein structures
Nobuyasu Koga et al.
NATURE (2012)
Peptide tag forming a rapid covalent bond to a protein, through engineering a bacterial adhesin
Bijan Zakeri et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Computational design of a protein crystal
Christopher J. Lanci et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy
Neil P. King et al.
SCIENCE (2012)
Structure of a 16-nm Cage Designed by Using Protein Oligomers
Yen-Ting Lai et al.
SCIENCE (2012)
Highly Conserved Protective Epitopes on Influenza B Viruses
Cyrille Dreyfus et al.
SCIENCE (2012)
Protein design with fragment databases
Erik Verschueren et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2011)
A Broadly Neutralizing Human Monoclonal Antibody That Recognizes a Conserved, Novel Epitope on the Globular Head of the Influenza H1N1 Virus Hemagglutinin
Jens C. Krause et al.
JOURNAL OF VIROLOGY (2011)
Generation of protein lattices by fusing proteins with matching rotational symmetry
John C. Sinclair et al.
NATURE NANOTECHNOLOGY (2011)
RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite
Sarel J. Fleishman et al.
PLOS ONE (2011)
Generalized Fragment Picking in Rosetta: Design, Protocols and Applications
Dominik Gront et al.
PLOS ONE (2011)
MolProbity: all-atom structure validation for macromolecular crystallography
Vincent B. Chen et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
Features and development of Coot
P. Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)
Signaling and functions of angiopoietin-1 in vascular protection
NPJ Brindle et al.
CIRCULATION RESEARCH (2006)
Bandit based Monte-Carlo planning
Levente Kocsis et al.
MACHINE LEARNING: ECML 2006, PROCEEDINGS (2006)
Automated molecular microscopy: The new Leginon system
C Suloway et al.
JOURNAL OF STRUCTURAL BIOLOGY (2005)
TM-align: a protein structure alignment algorithm based on the TM-score
Y Zhang et al.
NUCLEIC ACIDS RESEARCH (2005)
Angiopoietin-1 modulates endothelial cell function and gene expression via the transcription factor FKHR (FOXO1)
C Daly et al.
GENES & DEVELOPMENT (2004)
Coot:: model-building tools for molecular graphics
P Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
Origin of icosahedral symmetry in viruses
R Zandi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Nanohedra: Using symmetry to design self assembling protein cages, layers, crystals, and filaments
JE Padilla et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Angiopoietin-1 regulates endothelial cell survival through the phosphatidylinositol 3'-kinase/Akt signal transduction pathway
I Kim et al.
CIRCULATION RESEARCH (2000)
Share Paper
