Related references
Note: Only part of the references are listed.RNAstructures in alternative splicing and back-splicing
Bingbing Xu et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2021)
GENCODE 2021
Adam Frankish et al.
NUCLEIC ACIDS RESEARCH (2021)
Multiple competing RNA structures dynamically control alternative splicing in the human ATE1 gene
Marina Kalinina et al.
NUCLEIC ACIDS RESEARCH (2021)
Biological impact of mutually exclusive exon switching
Su Datt Lam et al.
PLOS COMPUTATIONAL BIOLOGY (2021)
Conserved long-range base pairings are associated with pre-mRNA processing of human genes
Svetlana Kalmykova et al.
NATURE COMMUNICATIONS (2021)
Unannotated splicing regulatory elements in deep intron space
John G. Conboy
WILEY INTERDISCIPLINARY REVIEWS-RNA (2021)
The clinical importance of tandem exon duplication-derived substitutions
Laura Martinez Gomez et al.
NUCLEIC ACIDS RESEARCH (2021)
RNA Splicing by the Spliceosome
Max E. Wilkinson et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 89 (2020)
Cis- and trans-regulations of pre-mRNA splicing by RNA editing enzymes influence cancer development
Sze Jing Tang et al.
NATURE COMMUNICATIONS (2020)
Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing
Emily C. Freund et al.
CELL REPORTS (2020)
Zinc Finger RNA-Binding Protein Zn72D Regulates ADAR-Mediated RNA Editing in Neurons
Anne L. Sapiro et al.
CELL REPORTS (2020)
NF90 modulates processing of a subset of human pri-miRNAs
Giuseppa Grasso et al.
NUCLEIC ACIDS RESEARCH (2020)
A large-scale binding and functional map of human RNA-binding proteins
Eric L. Van Nostrand et al.
NATURE (2020)
Prioritization of cancer therapeutic targets using CRISPR-Cas9 screens
Fiona M. Behan et al.
NATURE (2019)
Global donor and acceptor splicing site kinetics in human cells
Leonhard Wachutka et al.
ELIFE (2019)
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
NATURE BIOTECHNOLOGY (2019)
TCF3 mutually exclusive alternative splicing is controlled by long-range cooperative actions between hnRNPH1 and PTBP1
Takashi Yamazaki et al.
RNA (2019)
Alternative Splicing Regulatory Networks: Functions, Mechanisms, and Evolution
Jernej Ule et al.
MOLECULAR CELL (2019)
RBP-Maps enables robust generation of splicing regulatory maps
Brian A. Yee et al.
RNA (2019)
RBM4-SRSF3-MAP4K4 splicing cascade modulates the metastatic signature of colorectal cancer cell
Jung-Chun Lin et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2018)
Systematic Discovery of RNA Binding Proteins that Regulate MicroRNA Levels
Julia K. Nussbacher et al.
MOLECULAR CELL (2018)
A brave new world of RNA-binding proteins
Matthias W. Hentze et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)
ZFR coordinates crosstalk between RNA decay and transcription in innate immunity
Nazmul Haque et al.
NATURE COMMUNICATIONS (2018)
Mutually exclusive alternative splicing of pre-mRNAs
Yongfeng Jin et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2018)
Prespliceosome structure provides insights into spliceosome assembly and regulation
Clemens Plaschka et al.
NATURE (2018)
The properties of the RNA-binding protein NF90 are considerably modulated by complex formation with NF45
Tobias Schmidt et al.
BIOCHEMICAL JOURNAL (2017)
Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection
Xiang Li et al.
MOLECULAR CELL (2017)
The landscape of human mutually exclusive splicing
Klas Hatje et al.
MOLECULAR SYSTEMS BIOLOGY (2017)
Structure of a pre-catalytic spliceosome
Clemens Plaschka et al.
NATURE (2017)
Mechanistic insights into precursor messenger RNA splicing by the spliceosome
Yigong Shi
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)
Fractionation iCLIP detects persistent SR protein binding to conserved, retained introns in chromatin, nucleoplasm and cytoplasm
Mattia Brugiolo et al.
NUCLEIC ACIDS RESEARCH (2017)
Defining a Cancer Dependency Map
Aviad Tsherniak et al.
CELL (2017)
An Atomic Structure of the Human Spliceosome
Xiaofeng Zhang et al.
CELL (2017)
regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests
Bernat Gel et al.
BIOINFORMATICS (2016)
LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
Nathan C. Sheffield et al.
BIOINFORMATICS (2016)
Nuclear factor 90 uses an ADAR2-like binding mode to recognize specific bases in dsRNA
Uma Jayachandran et al.
NUCLEIC ACIDS RESEARCH (2016)
CLIPSeqTools-a novel bioinformatics CLIP-seq analysis suite
Manolis Maragkakis et al.
RNA (2016)
Rbfox Proteins Regulate Splicing as Part of a Large Multiprotein Complex LASR
Andrey Damianov et al.
CELL (2016)
irCLIP platform for efficient characterization of protein-RNA interactions
Brian J. Zarnegar et al.
NATURE METHODS (2016)
Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)
Eric L. Van Nostrand et al.
NATURE METHODS (2016)
Mechanisms and Regulation of Alternative Pre-mRNA Splicing
Yeon Lee et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 84 (2015)
Detained introns are a novel, widespread class of post-transcriptionally spliced introns
Paul L. Boutz et al.
GENES & DEVELOPMENT (2015)
Structure of a yeast spliceosome at 3.6-angstrom resolution
Chuangye Yan et al.
SCIENCE (2015)
Repbase Update, a database of repetitive elements in eukaryotic genomes
Weidong Bao et al.
MOBILE DNA (2015)
Ilf3 and NF90 functions in RNA biology
Sandrine Castella et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2015)
A census of human RNA-binding proteins
Stefanie Gerstberger et al.
NATURE REVIEWS GENETICS (2014)
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
Shihao Shen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Mechanistic insights into mutually exclusive splicing in dynamin 1
Mikita Suyama
BIOINFORMATICS (2013)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Helga Thorvaldsdottir et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Dynamic Integration of Splicing within Gene Regulatory Pathways
Ulrich Braunschweig et al.
CELL (2013)
GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations
Gordon Gremme et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2013)
The Genotype-Tissue Expression (GTEx) project
John Lonsdale et al.
NATURE GENETICS (2013)
Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
Michael T. Lovci et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
Detecting differential usage of exons from RNA-seq data
Simon Anders et al.
GENOME RESEARCH (2012)
PaxDb, a Database of Protein Abundance Averages Across All Three Domains of Life
M. Wang et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Synthetic oligonucleotides recruit ILF2/3 to RNA transcripts to modulate splicing
Frank Rigo et al.
NATURE CHEMICAL BIOLOGY (2012)
Concentration-dependent control of pyruvate kinase M mutually exclusive splicing by hnRNP proteins
Mo Chen et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
NF45 dimerizes with NF90, Zfr and SPNR via a conserved domain that has a nucleotidyltransferase fold
Urszula M. Wolkowicz et al.
NUCLEIC ACIDS RESEARCH (2012)
Alternative Splicing of a Novel Inducible Exon Diversifies the CASK Guanylate Kinase Domain
Jill A. Dembowski et al.
JOURNAL OF NUCLEIC ACIDS (2012)
ViennaRNA Package 2.0
Ronny Lorenz et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2011)
RNA structure and the mechanisms of alternative splicing
C. Joel McManus et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2011)
New insights into RNA secondary structure in the alternative splicing of pre-mRNAs
Yongfeng Jin et al.
RNA BIOLOGY (2011)
Spliceosome Structure and Function
Cindy L. Will et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Phosphorylation of the NFAR proteins by the dsRNA- dependent protein kinase PKR constitutes a novel mechanism of translational regulation and cellular defense
Ai Harashima et al.
GENES & DEVELOPMENT (2010)
APPLICATIONS OF NEXT-GENERATION SEQUENCING RNA processing and its regulation: global insights into biological networks
Donny D. Licatalosi et al.
NATURE REVIEWS GENETICS (2010)
NF90 selectively represses the translation of target mRNAs bearing an AU-rich signature motif
Yuki Kuwano et al.
NUCLEIC ACIDS RESEARCH (2010)
BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
Tim Hulsen et al.
BMC GENOMICS (2008)
Nuclear factor 45 (NF45) is a regulatory subunit of complexes with NF90/110 involved in mitotic control
Deyu Guan et al.
MOLECULAR AND CELLULAR BIOLOGY (2008)
NFAR-1 and-2 modulate translation and are required for efficient host defense
Ingrid Pfeifer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Zinc finger protein Zn72D promotes productive splicing of the maleless transcript
Kathleen A. Worringer et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
A regulator of Dscam mutually exclusive splicing fidelity
Sara Olson et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)
RNA-based affinity purification reveals 7SK RNPs with distinct composition and regulation
J. Robert Hogg et al.
RNA (2007)
Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements
Liana F. Lareau et al.
NATURE (2007)
Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
Julie Z. Ni et al.
GENES & DEVELOPMENT (2007)
Variable window binding for mutually exclusive alternative splicing
D Anastassiou et al.
GENOME BIOLOGY (2006)
Mutuallv exclusive splicing of the insect Dscam Pre-mRNA directed by competing intronic RNA secondary structures
BR Graveley
CELL (2005)
Ultraconserved elements in the human genome
G Bejerano et al.
SCIENCE (2004)