Related references
Note: Only part of the references are listed.Unique spatiotemporal fMRI dynamics in the awake mouse brain
Daniel Gutierrez-Barragan et al.
CURRENT BIOLOGY (2022)
Dissection of brain-wide resting-state and functional somatosensory circuits by fMRI with optogenetic silencing
Won Beom Jung et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)
Role of anterior cingulate cortex inputs to periaqueductal gray for pain avoidance
Jeong-Yun Lee et al.
CURRENT BIOLOGY (2022)
All-optical interrogation of neural circuits in behaving mice
Lloyd E. Russell et al.
NATURE PROTOCOLS (2022)
Medial prefrontal cortex and anteromedial thalamus interaction regulates goal-directed behavior and dopaminergic neuron activity
Chen Yang et al.
NATURE COMMUNICATIONS (2022)
Awake Mouse fMRI and Pupillary Recordings in the Ultra-High Magnetic Field
Hang Zeng et al.
FRONTIERS IN NEUROSCIENCE (2022)
A Through-Intact-Skull (TIS) chronic window technique for cortical structure and function observation in mice
Dongyu Li et al.
ELIGHT (2022)
Deep brain optogenetics without intracranial surgery
Ritchie Chen et al.
NATURE BIOTECHNOLOGY (2021)
Whole brain dynamics during optogenetic self-stimulation of the medial prefrontal cortex in mice
Christopher G. Cover et al.
COMMUNICATIONS BIOLOGY (2021)
Morphological diversity of single neurons in molecularly defined cell types
Hanchuan Peng et al.
NATURE (2021)
Cellular anatomy of the mouse primary motor cortex
Rodrigo Munoz-Castaneda et al.
NATURE (2021)
Genetic dissection of the glutamatergic neuron system in cerebral cortex
Katherine S. Matho et al.
NATURE (2021)
High-sensitivity detection of optogenetically-induced neural activity with functional ultrasound imaging
Bradley Jay Edelman et al.
NEUROIMAGE (2021)
Characteristics of fMRI responses to visual stimulation in anesthetized vs. awake mice
Thi Ngoc Anh Dinh et al.
NEUROIMAGE (2021)
Early fMRI responses to somatosensory and optogenetic stimulation reflect neural information flow
Won Beom Jung et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Contribution of Excitatory and Inhibitory Neuronal Activity to BOLD fMRI
Hyun Seok Moon et al.
CEREBRAL CORTEX (2021)
Infrared neural stimulation with 7T fMRI: A rapid in vivo method for mapping cortical connections of primate amygdala
Sunhan Shi et al.
NEUROIMAGE (2021)
Probing neural codes with two-photon holographic optogenetics
Hillel Adesnik et al.
NATURE NEUROSCIENCE (2021)
Mapping functional gradients of the striatal circuit using simultaneous microelectric stimulation and ultrahigh-field fMRI in non-human primates
Min-Jun Han et al.
NEUROIMAGE (2021)
Characterization of brain-wide somatosensory BOLD fMRI in mice under dexmedetomidine/isoflurane and ketamine/xylazine
Taeyi You et al.
SCIENTIFIC REPORTS (2021)
Deuterium oxide as a contrast medium for real-time MRI-guided endovascular neurointervention
Lin Chen et al.
THERANOSTICS (2021)
Awake functional MRI detects neural circuit dysfunction in a mouse model of autism
Tomokazu Tsurugizawa et al.
SCIENCE ADVANCES (2020)
The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas
Quanxin Wang et al.
CELL (2020)
Scanless two-photon excitation with temporal focusing
Eirini Papagiakoumou et al.
NATURE METHODS (2020)
Cortical Observation by Synchronous Multifocal Optical Sampling Reveals Widespread Population Encoding of Actions
Isaac Kauvar et al.
NEURON (2020)
BOLD fMRI and hemodynamic responses to somatosensory stimulation in anesthetized mice: spontaneous breathing vs. mechanical ventilation
Hyun-Ji Shim et al.
NMR IN BIOMEDICINE (2020)
The (Un)Conscious Mouse as a Model for Human Brain Functions: Key Principles of Anesthesia and Their Impact on Translational Neuroimaging
Henning M. Reimann et al.
FRONTIERS IN SYSTEMS NEUROSCIENCE (2020)
Towards precise resting-state fMRI biomarkers in psychiatry: synthesizing developments in transdiagnostic research, dimensional models of psychopathology, and normative neurodevelopment
Linden Parkes et al.
CURRENT OPINION IN NEUROBIOLOGY (2020)
Simultaneous cortex-wide fluorescence Ca2+ imaging and whole-brain fMRI
Evelyn M. R. Lake et al.
NATURE METHODS (2020)
Awake and behaving mouse fMRI during Go/No-Go task
Zhe Han et al.
NEUROIMAGE (2019)
Optogenetic fMRI interrogation of brain-wide central vestibular pathways
Alex T. L. Leong et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Focal infrared neural stimulation with high-field functional MRI: A rapid way to map mesoscale brain connectomes
Augix Guohua Xu et al.
SCIENCE ADVANCES (2019)
Thermal constraints on in vivo optogenetic manipulations
Scott F. Owen et al.
NATURE NEUROSCIENCE (2019)
Mouse BOLD fMRI at ultrahigh field detects somatosensory networks including thalamic nuclei
Won Beom Jung et al.
NEUROIMAGE (2019)
Task-Dependent Changes in the Large-Scale Dynamics and Necessity of Cortical Regions
Lucas Pinto et al.
NEURON (2019)
Hierarchical organization of cortical and thalamic connectivity
Julie A. Harris et al.
NATURE (2019)
Functional MRI Readouts From BOLD and Diffusion Measurements Differentially Respond to Optogenetic Activation and Tissue Heating
Franziska Albers et al.
FRONTIERS IN NEUROSCIENCE (2019)
Opto nongenetics inhibition of neuronal firing
Karima Ait Ouares et al.
EUROPEAN JOURNAL OF NEUROSCIENCE (2019)
Thalamic Input to Orbitofrontal Cortex Drives Brain-wide, Frequency-Dependent Inhibition Mediated by GABA and Zona Incerta
Andrew J. Weitz et al.
NEURON (2019)
A brain-wide functional map of the serotonergic responses to acute stress and fluoxetine
Joanes Grandjean et al.
NATURE COMMUNICATIONS (2019)
Optogenetic fMRI and electrophysiological identification of region-specific connectivity between the cerebellar cortex and forebrain
Katrina Y. Choe et al.
NEUROIMAGE (2018)
Mouse fMRI under ketamine and xylazine anesthesia: Robust contralateral somatosensory cortex activation in response to forepaw stimulation
Hyun-Ji Shim et al.
NEUROIMAGE (2018)
Functional connectivity under six anesthesia protocols and the awake condition in rat brain
Jaakko Paasonen et al.
NEUROIMAGE (2018)
A comprehensive analysis of resting state fMRI measures to classify individual patients with Alzheimer's disease
Frank de Vos et al.
NEUROIMAGE (2018)
Ultra-Slow Single-Vessel BOLD and CBV-Based fMRI Spatiotemporal Dynamics and Their Correlation with Neuronal Intracellular Calcium Signals
Yi He et al.
NEURON (2018)
Near-infrared deep brain stimulation via upconversion nanoparticle-mediated optogenetics
Shuo Chen et al.
SCIENCE (2018)
Resting-state connectivity in neurodegenerative disorders: Is there potential for an imaging biomarker?
Christian Hohenfeld et al.
NEUROIMAGE-CLINICAL (2018)
Closed-loop all-optical interrogation of neural circuits in vivo
Zihui Zhang et al.
NATURE METHODS (2018)
Effective Connectivity Measured Using Optogenetically Evoked Hemodynamic Signals Exhibits Topography Distinct from Resting State Functional Connectivity in the Mouse
Adam Q. Bauer et al.
CEREBRAL CORTEX (2018)
True and apparent optogenetic BOLD fMRI signals
Florian Schmid et al.
MAGNETIC RESONANCE IN MEDICINE (2017)
Unexpected global impact of VTA dopamine neuron activation as measured by opto-fMRI
S. Lohani et al.
MOLECULAR PSYCHIATRY (2017)
Resting-state connectivity biomarkers define neurophysiological subtypes of depression
Andrew T. Drysdale et al.
NATURE MEDICINE (2017)
Structural Basis of Large-Scale Functional Connectivity in the Mouse
Joanes Grandjean et al.
JOURNAL OF NEUROSCIENCE (2017)
Effect of wavelength and beam width on penetration in light-tissue interaction using computational methods
Caerwyn Ash et al.
LASERS IN MEDICAL SCIENCE (2017)
Studying Brain Circuit Function with Dynamic Causal Modeling for Optogenetic fMRI
David Bernal-Casas et al.
NEURON (2017)
Light controls cerebral blood flow in naive animals
Ravi L. Rungta et al.
Nature Communications (2017)
Layer-specific optogenetic activation of pyramidal neurons causes beta-gamma entrainment of neonatal networks
Sebastian H. Bitzenhofer et al.
NATURE COMMUNICATIONS (2017)
Structure-Function Network Mapping and Its Assessment via Persistent Homology
Hualou Liang et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Surpassing light-induced cell damage in vitro with novel cell culture media
John H. Stockley et al.
SCIENTIFIC REPORTS (2017)
Prefrontal cortical regulation of brainwide circuit dynamics and reward-related behavior
Emily A. Ferenczi et al.
SCIENCE (2016)
Sensory and optogenetically driven single-vessel fMRI
Xin Yu et al.
NATURE METHODS (2016)
Combining optogenetic stimulation and fMRI to validate a multivariate dynamical systems model for estimating causal brain interactions
Srikanth Ryali et al.
NEUROIMAGE (2016)
Activation of Direct and Indirect Pathway Medium Spiny Neurons Drives Distinct Brain-wide Responses
Hyun Joo Lee et al.
NEURON (2016)
Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex
Tony Hyun Kim et al.
CELL REPORTS (2016)
Realistic Numerical and Analytical Modeling of Light Scattering in Brain Tissue for Optogenetic Applications
Guy Yona et al.
ENEURO (2016)
All-Optical Interrogation of Neural Circuits
Valentina Emiliani et al.
JOURNAL OF NEUROSCIENCE (2015)
Functional connectome fingerprinting: identifying individuals using patterns of brain connectivity
Emily S. Finn et al.
NATURE NEUROSCIENCE (2015)
Mapping the functional network of medial prefrontal cortex by combining optogenetics and fMRI in awake rats
Zhifeng Liang et al.
NEUROIMAGE (2015)
Optogenetic fMRI reveals distinct, frequency-dependent networks recruited by dorsal and intermediate hippocampus stimulations
Andrew J. Weitz et al.
NEUROIMAGE (2015)
Modeling the Spatiotemporal Dynamics of Light and Heat Propagation for In Vivo Optogenetics
Joseph M. Stujenske et al.
CELL REPORTS (2015)
Frequency-selective control of cortical and subcortical networks by central thalamus
Jia Liu et al.
ELIFE (2015)
Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo
Adam M. Packer et al.
NATURE METHODS (2015)
Neural and Hemodynamic Responses Elicited by Forelimb- and Photo-stimulation in Channelrhodopsin-2 Mice: Insights into the Hemodynamic Point Spread Function
Alberto L. Vazquez et al.
CEREBRAL CORTEX (2014)
Optogenetic Mapping after Stroke Reveals Network-Wide Scaling of Functional Connections and Heterogeneous Recovery of the Peri-Infarct
Diana H. Lim et al.
JOURNAL OF NEUROSCIENCE (2014)
A mesoscale connectome of the mouse brain
Seung Wook Oh et al.
NATURE (2014)
All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins
Daniel R. Hochbaum et al.
NATURE METHODS (2014)
Specificity of stimulus-evoked fMRI responses in the mouse: The influence of systemic physiological changes associated with innocuous stimulation under four different anesthetics
Aileen Schroeter et al.
NEUROIMAGE (2014)
Spatially Selective Holographic Photoactivation and Functional Fluorescence Imaging in Freely Behaving Mice with a Fiberscope
Vivien Szabo et al.
NEURON (2014)
Targeting neurons and photons for optogenetics
Adam M. Packer et al.
NATURE NEUROSCIENCE (2013)
fMRI response to blue light delivery in the naive brain: Implications for combined optogenetic fMRI studies
Isabel N. Christie et al.
NEUROIMAGE (2013)
Cerebral blood volume MRI with intravascular superparamagnetic iron oxide nanoparticles
Seong-Gi Kim et al.
NMR IN BIOMEDICINE (2013)
Structural and Functional Brain Networks: From Connections to Cognition
Hae-Jeong Park et al.
SCIENCE (2013)
Holographic optogenetic stimulation of patterned neuronal activity for vision restoration
Inna Reutsky-Gefen et al.
NATURE COMMUNICATIONS (2013)
In vivo large-scale cortical mapping using channelrhodopsin-2 stimulation in transgenic mice reveals asymmetric and reciprocal relationships between cortical areas
Diana H. Lim et al.
FRONTIERS IN NEURAL CIRCUITS (2012)
Direct Comparison of Spontaneous Functional Connectivity and Effective Connectivity Measured by Intracortical Microstimulation: An fMRI Study in Macaque Monkeys
Teppei Matsui et al.
CEREBRAL CORTEX (2011)
Mapping brain networks in awake mice using combined optical neural control and fMRI
M. Desai et al.
JOURNAL OF NEUROPHYSIOLOGY (2011)
Cell type-specific channelrhodopsin-2 transgenic mice for optogenetic dissection of neural circuitry function
Shengli Zhao et al.
NATURE METHODS (2011)
Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans
Andrew M. Leifer et al.
NATURE METHODS (2011)
A reproducible evaluation of ANTs similarity metric performance in brain image registration
Brian B. Avants et al.
NEUROIMAGE (2011)
Global and local fMRI signals driven by neurons defined optogenetically by type and wiring
Jin Hyung Lee et al.
NATURE (2010)
Automated light-based mapping of motor cortex by photoactivation of channelrhodopsin-2 transgenic mice
Oliver G. S. Ayling et al.
NATURE METHODS (2009)
Correspondence of the brain's functional architecture during activation and rest
Stephen M. Smith et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
In vivo light-induced activation of neural circuitry in transgenic mice expressing channelrhodopsin-2
Benjamin R. Arenkiel et al.
NEURON (2007)
Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging
Michael D. Fox et al.
NATURE REVIEWS NEUROSCIENCE (2007)
Mapping cortical activity elicited with electrical microstimulation using fMRI in the macaque
AS Tolias et al.
NEURON (2005)
Millisecond-timescale, genetically targeted optical control of neural activity
ES Boyden et al.
NATURE NEUROSCIENCE (2005)
Concurrent fMRI and optical measures for the investigation of the hemodynamic response function
AJ Kennerley et al.
MAGNETIC RESONANCE IN MEDICINE (2005)
The human connectome: A structural description of the human brain
O Sporns et al.
PLOS COMPUTATIONAL BIOLOGY (2005)
Advances in functional and structural MR image analysis and implementation as FSL
SM Smith et al.
NEUROIMAGE (2004)
An approach to probe some neural systems interaction by functional MRI at neural time scale down to milliseconds
S Ogawa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Share Paper
