4.6 Article

Study of MDM2 as Prognostic Biomarker in Brain-LGG Cancer and Bioactive Phytochemicals Inhibit the p53-MDM2 Pathway: A Computational Drug Development Approach

Related references

Note: Only part of the references are listed.
Article Endocrinology & Metabolism

Antidepressant activity of phytochemicals of Mangifera indica seeds assisted by integrated computational analysis

Uzma Saleem et al.

Summary: This study aimed to investigate the antidepressant properties of mango seeds in animals and confirm its effectiveness through molecular docking. The results showed that mango seed extract improved physical activity and biochemical parameters in mice. Additionally, catechin was found to be a potential antidepressant agent. Therefore, mango seeds could be a significant alternative therapy for depression.

METABOLIC BRAIN DISEASE (2023)

Article Biochemistry & Molecular Biology

Amentoflavone derivatives significantly act towards the main protease (3CLPRO/MPRO) of SARS-CoV-2: in silico admet profiling, molecular docking, molecular dynamics simulation, network pharmacology

Dipta Dey et al.

Summary: SARS-CoV-2 is the main cause of COVID-19, and plant-derived amentoflavone derivatives show potential as antiviral agents. The study found that 10 amentoflavone derivatives strongly interact with the key enzyme of SARS-CoV-2, and exhibit potential antiviral effects in molecular dynamic simulation.

MOLECULAR DIVERSITY (2023)

Article Biochemistry & Molecular Biology

Oncoinformatic screening of the gene clusters involved in the HER2-positive breast cancer formation along with the in silico pharmacodynamic profiling of selective long-chain omega-3 fatty acids as the metastatic antagonists

A. K. M. Helal Morshed et al.

Summary: This research explores the potential of EPA and DHA fatty acids as targeted therapies for HER2-positive breast cancer, revealing their dynamic characteristics and potential drug targets through a series of experiments and simulations.

MOLECULAR DIVERSITY (2023)

Article Chemistry, Multidisciplinary

Exploring the Anticonvulsant Activity of Aqueous Extracts of Ficus benjamina L. Figs in Experimentally Induced Convulsions

Rajinder Singh et al.

Summary: Ficus benjamina L. is a tree native to Southeast Asia, known for its medicinal properties. The extract of the dried figs of Ficus benjamina L. showed anticonvulsant activity in in vivo studies.

JOURNAL OF CHEMISTRY (2023)

Article Biochemistry & Molecular Biology

Natural flavonoids effectively block the CD81 receptor of hepatocytes and inhibit HCV infection: a computational drug development approach

Dipta Dey et al.

Summary: HCV infection is a significant public health concern, and researchers have identified several flavonoid compounds through in silico analysis that may serve as important alternative antiviral agents.

MOLECULAR DIVERSITY (2023)

Review Biotechnology & Applied Microbiology

A review on influence of biochar amendment on soil processes and environmental remediation

Sadia Aziz et al.

Summary: Biochar is a byproduct of biomass degraded under different pyrolysis conditions in an oxygen-limited environment. Its characteristics are influenced by the type of biomass and pyrolysis temperature. Depending on the pyrolysis conditions, biochar contains varying amounts of resistant and labile carbon, as well as nutrients, which affect soil properties and microbial processes. It acts as a microhabitat for soil microorganisms, influencing the diversity, composition, and distribution of soil microbial communities. This review provides an overview of biochar characteristics, its interactions with soil and associated biota, and its role in soil remediation. It also discusses the factors affecting biochar's capacity to adsorb organic pollutants using different mechanisms. Being an effective adsorbent, biochar has been extensively explored in environmental remediation of contaminated soils due to its high specific surface area, large porosity, and numerous surface functional groups.

BIOTECHNOLOGY AND GENETIC ENGINEERING REVIEWS (2023)

Review Medicine, Research & Experimental

Advanced implications of nanotechnology in disease control and environmental perspectives

Partha Biswas et al.

Summary: Nanotechnology is a multidisciplinary field that involves collaboration among researchers from various fields. It has diverse applications in smart sensing technologies, disease diagnosis, and treatment. In medicine, nanotechnology allows interaction at the molecular level, enabling high sensitivity and specificity. Nanomaterials, with their unique characteristics, are widely used in different industries and have the potential to reduce pollutants in the environment. They also play a significant role in drug discovery and delivery systems.

BIOMEDICINE & PHARMACOTHERAPY (2023)

Article Biochemistry & Molecular Biology

Can Artemisia herba-alba Be Useful for Managing COVID-19 and Comorbidities?

Anamul Hasan et al.

Summary: This research focuses on evaluating the potential efficacy of Artemisia herba-alba for treating COVID-19 and its symptoms and comorbidities using a combination of molecular docking, reported ethnic uses, and pharmacological studies. The study shows that phytochemicals from Artemisia herba-alba could be effective against COVID-19 and its associated comorbidities.

MOLECULES (2022)

Article Engineering, Chemical

A Comprehensive Review of Recent Advancements in Cancer Immunotherapy and Generation of CAR T Cell by CRISPR-Cas9

Md. Al Saber et al.

Summary: Cancer immunotherapy has emerged as a promising new treatment option, but there are challenges in effectively targeting cancer antigens. Using CRISPR-Cas9 technology to enhance CAR-T cell efficiency offers potential for better cancer treatment.

PROCESSES (2022)

Article Engineering, Chemical

Genistein, a Potential Phytochemical against Breast Cancer Treatment-Insight into the Molecular Mechanisms

Md Sohel et al.

Summary: This review explores the molecular mechanisms and anticancer activities of genistein (GNT) in breast cancer (BC). GNT exerts its effects through multiple pathways, including apoptosis induction, cell cycle arrest, inhibition of angiogenesis and metastasis, and enhancement of the efficacy of standard chemotherapeutic drugs. These findings suggest that GNT could serve as a beneficial therapeutic agent when standard drugs are not available in the pharma markets.

PROCESSES (2022)

Article Biochemistry & Molecular Biology

Cordycepin as a Promising Inhibitor of SARS-CoV-2 RNA dependent RNA polymerase (RdRp)

Shabana Bibi et al.

Summary: This study proposed a drug-repositioning pipeline for the design and discovery of an effective fungal-derived bioactive metabolite as a drug candidate against SARS-CoV-2. The results showed that cordycepin exhibited strong inhibitory potential against the SARSCoV-2 polymerase enzyme (RdRp). Further laboratory testing is recommended.

CURRENT MEDICINAL CHEMISTRY (2022)

Article Plant Sciences

Evaluation of in vitro and in silico anti-inflammatory potential of some selected medicinal plants of Bangladesh against cyclooxygenase-II enzyme

Md Aminul Islam et al.

Summary: Both experimental and computational studies have scientifically revealed the folklore uses of the experimental medicinal plants in inflammatory disorders. Three phytochemicals exhibited better competitive results than the conventional anti-inflammatory drug naproxen in molecular docking and molecular dynamics simulation studies. These findings suggest that N-(2-hydroxycyclohexyl)-4-methylbenzenesulfonamide, Benzeneethanamine, 2-fluoro-.beta., 3, 4-trihydroxy-N-isopropyl, and 3,5-di-tert-butylphenol could be potential leads for COX-2 inhibitors.

JOURNAL OF ETHNOPHARMACOLOGY (2022)

Article Pharmacology & Pharmacy

Virtual screening and molecular dynamics simulation analysis of Forsythoside A as a plant-derived inhibitor of SARS-CoV-2 3CLpro

Shabana Bibi et al.

Summary: This study identified a potential SARS-CoV-2 inhibitor through virtual screening of a database of 78 natural antiviral compounds. Molecular docking and molecular dynamics simulations were used to analyze the interaction between the inhibitor and the key protease of SARS-CoV-2, revealing its ability to block viral replication and transcription. These findings are significant for the development of new drugs against SARS-CoV-2.

SAUDI PHARMACEUTICAL JOURNAL (2022)

Review Biotechnology & Applied Microbiology

Plants in Anticancer Drug Discovery: From Molecular Mechanism to Chemoprevention

Arif Jamal Siddiqui et al.

Summary: Cancer is a major cause of death worldwide, and the discovery of new anticancer drugs is crucial. Natural products have been recognized as effective agents against various diseases, including cancer. Plants and microbes are potential sources of natural compounds to combat cancer, and research has advanced to a molecular level, leading to the development of potent anticancer drugs. Plants are abundant resources for the development of novel therapeutic agents to manage and prevent different types of cancer. The high toxicity, unfavorable side effects, and drug resistance of some chemotherapy drugs drive the demand for natural compounds as new anticancer drugs. This evidence-based review provides valuable information for scientists involved in the development of natural, safe, effective, and economical therapeutic agents against various cancers, making an important contribution to the field of drug discovery where combination therapy can enhance the efficacy of newly synthesized drugs.

BIOMED RESEARCH INTERNATIONAL (2022)

Review Integrative & Complementary Medicine

A review of potential anti-cancer properties of some selected medicinal plants grown in Iran

Azadeh Hamedi et al.

Summary: This review explores the potential of Iranian medicinal plants as a rich source of anticancer compounds. Through the analysis of 114 plant species, it was found that these plants contain various components, such as organo-sulfur compounds, alkaloids, and polyphenols, which have shown anticancer effects through mechanisms such as apoptosis, cytotoxicity, and cell cycle arrest. The study highlights the importance of investigating Iranian endemic species for the discovery of novel anticancer drugs.

JOURNAL OF HERBAL MEDICINE (2022)

Review Oncology

Investigating the Anticancer Potential of Salvicine as a Modulator of Topoisomerase II and ROS Signaling Cascade

Dipta Dey et al.

Summary: Salvicine is a new diterpenoid quinone substance derived from a Chinese herb, which has shown powerful growth-controlling abilities against a wide range of human cancer cells and inhibitory effects on multidrug-resistant cells. It acts by inducing reactive oxygen species signaling, reducing the catalytic activity of topoisomerase II, and suppressing DNA-Topo II interaction. It also plays a critical role in the anticancer-mediated signaling pathway by inducing DNA damage, overcoming multidrug resistance, and suppressing tumor cell adhesion.

FRONTIERS IN ONCOLOGY (2022)

Article Chemistry, Physical

Integrative network and computational simulation of clinical and genomic data for the identification of mutated EGFR in breast cancer patients for therapeutic targeting using purine analogues

Jitender Singh et al.

Summary: EGFR, a major oncogene in breast cancers, is frequently activated due to genetic alterations. Clinical sample analysis showed that patients with unaltered EGFR had higher overall survival rates than those with altered EGFR. Using molecular docking and dynamic simulation, a compound (113801230) was identified to effectively target both unaltered and altered EGFR as a therapeutic drug for breast cancer.

MOLECULAR SIMULATION (2022)

Article Plant Sciences

UHPLC-Q/Orbitrap/MS based chemical fingerprinting and hepatoprotective potential of medicinal plant Morinda angustifolia Roxb.

Md Mehedi Hasan et al.

Summary: This study assessed the hepatoprotective potential of M. angustifolia bark extract and identified its active constituents using in silico techniques. Experimental results confirmed the extract's significant hepatoprotective activity, while molecular docking studies provided insights into the therapeutic potential of identified compounds in oxidative liver damage.

SOUTH AFRICAN JOURNAL OF BOTANY (2022)

Review Oncology

A Comprehensive Discussion in Vaginal Cancer Based on Mechanisms, Treatments, Risk Factors and Prevention

Sumit Kumar Baral et al.

Summary: Vaginal cancer is a rare disease that is increasing in younger women due to high-risk HPV infections. It is frequently found along with cervical cancer, and the causes are uncertain. Risk factors such as ring pessaries, chronic vaginitis, and sexual behavior are associated with the disease.

FRONTIERS IN ONCOLOGY (2022)

Article Mathematical & Computational Biology

Identification of blood-based inflammatory biomarkers for the early-stage detection of acute myocardial infarction

Md. Takim Sarker et al.

Summary: This study aimed to identify key genes for early detection of AMI by analyzing expression data from peripheral blood samples. Several potential inflammatory biomarkers for early-stage detection of AMI were identified.

NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS (2022)

Review Biochemistry & Molecular Biology

A Comprehensive Analysis and Anti-Cancer Activities of Quercetin in ROS-Mediated Cancer and Cancer Stem Cells

Partha Biswas et al.

Summary: Reactive oxygen species (ROS) play a critical role in carcinogenesis by affecting cell proliferation, survival, and apoptosis through genetic mutations, activation of oncogenes, and increased oxidative stress. Quercetin, a plant-derived bioflavonoid, has been found to scavenge ROS and exhibit anti-tumor properties, particularly in solid tumors. The unique feature of cancer cells, having higher levels of ROS, makes them susceptible to quercetin. Targeting ROS metabolism in cancer cells while sparing normal cells could be a promising approach in cancer therapy.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)

Article Biology

Estimating the Prognosis of Low-Grade Glioma with Gene Attention Using Multi-Omics and Multi-Modal Schemes

Sanghyuk Roy Choi et al.

Summary: The Multi-Prognosis Estimation Network (Multi-PEN), a deep learning model that employs multi-omics and multi-modal schemes, is proposed in this study for the prognosis estimation of low-grade glioma (LGG) patients. Using Multi-PEN, MYBL1 and hsa-mir-421 were identified as the most significant mRNA and miRNA, respectively, in the prognosis of LGG patients. The findings of this study are supported by existing research on prognostic mRNAs and miRNAs.

BIOLOGY-BASEL (2022)

Article Biology

An In-Silico Identification of Potential Flavonoids against Kidney Fibrosis Targeting TGF beta R-1

Md Hasanur Rahman et al.

Summary: This study identified potential therapeutic flavonoid compounds, such as Epicatechin, Fisetin, and Luteolin, with high binding affinity to TGF beta R-1 for the development of therapeutics against kidney fibrosis.

LIFE-BASEL (2022)

Article Public, Environmental & Occupational Health

Evaluation of Melongosides as Potential Inhibitors of NS2B-NS3 Activator-Protease of Dengue Virus (Serotype 2) by Using Molecular Docking and Dynamics Simulation Approach

Partha Biswas et al.

Summary: Dengue is a Flavivirus infection transmitted through mosquitoes, and currently there are no approved drugs or vaccines for treatment. This study suggests that melongosides, a type of plant-derived compound, may have potential as a DENV inhibitory agent, indicating the need for further scientific studies to explore their therapeutic effects.

JOURNAL OF TROPICAL MEDICINE (2022)

Article Agriculture, Dairy & Animal Science

Point-specific interactions of isovitexin with the neighboring amino acid residues of the hACE2 receptor as a targeted therapeutic agent in suppressing the SARS-CoV-2 influx mechanism

Nourin Ferdausi et al.

Summary: This study aimed to evaluate the potential of isovitexin as a hACE2-specific therapeutic drug. Through molecular docking and molecular dynamics simulations, it was found that isovitexin exhibited high binding affinity to the hACE2 receptor and could stabilize the complex, potentially inhibiting COVID-19 infection.

JOURNAL OF ADVANCED VETERINARY AND ANIMAL RESEARCH (2022)

Article Agriculture, Dairy & Animal Science

Catabolic profiling of selective enzymes in the saccharification of non-food lignocellulose parts of biomass into functional edible sugars and bioenergy: An in silico bioprospecting

Parag Kumar Paul et al.

Summary: This research aims to assess the potential of converting lignocellulose parts of agricultural biomass wastes into functional edible sugars and biofuels through the analysis of different hydrolytic enzymes. The results show that versatile peroxidase has promising catalytic activity in lignin degradation, while Melanocarpus albomyces endoglucanase performs well in cellulose degradation.

JOURNAL OF ADVANCED VETERINARY AND ANIMAL RESEARCH (2022)

Article Chemistry, Medicinal

Molecular Docking Studies Reveal Rhein from rhubarb (Rheum rhabarbarum) as a Putative Inhibitor of ATP-binding Cassette Super-family G member 2

Muhammad Saad Khan et al.

Summary: The study utilized pharmacophore-based screening and molecular docking methods to identify a potential lead compound as an inhibitor of ATP-binding cassette Super-family G member 2. These natural compounds may help reverse multidrug resistance and increase the effectiveness of chemotherapy in cancer treatment.

MEDICINAL CHEMISTRY (2021)

Article Biochemistry & Molecular Biology

Computational discovery of plant-based inhibitors against human carbonic anhydrase IX and molecular dynamics simulation

Shafi Mahmud et al.

Summary: The study screened 42 plant-derived compounds and identified three with higher binding affinity, potentially serving as potent hCAIX inhibitors. Further experimental validation of these potential inhibitors could effectively target the hCAIX protein, paving the way for prospective anticancer therapeutics.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2021)

Article Biochemical Research Methods

Potential inhibitors for the novel coronavirus (SARS-CoV-2)

Yanqiang Han et al.

Summary: This study investigated the binding mechanism and inhibitory ability of clinically approved drugs and a newly designed inhibitor against SARS-CoV-2 through molecular simulation. The results suggest that the newly designed inhibitor 13b may have potentially stronger inhibitory ability compared to Chloroquine, with higher research priority.

BRIEFINGS IN BIOINFORMATICS (2021)

Article Biochemical Research Methods

Exploration of natural compounds with anti-SARS-CoV-2 activity via inhibition of SARS-CoV-2 Mpro

Shiv Bharadwaj et al.

Summary: By utilizing in silico and in vitro methods, natural compounds have been identified as promising candidates for inhibiting SARS-CoV-2 M-pro. These compounds show significant binding energy and molecular interactions with essential residues in the active site of the virus's main protease.

BRIEFINGS IN BIOINFORMATICS (2021)

Article Plant Sciences

Metabolite profiling, anti-inflammatory, analgesic potentials of edible herb Colocasia gigantea and molecular docking study against COX-II enzyme

Md Nazmul Hasan Zilani et al.

Summary: This study demonstrated the significant anti-inflammatory and analgesic activities of Colocasia gigantea, with bioactive compounds such as (-)-epicatechin playing a key role. Molecular docking against the anti-inflammatory enzyme COX-2 revealed strong binding affinity of (-)-epicatechin. The results support the traditional use of edible herb C. gigantea in ancestral medicine.

JOURNAL OF ETHNOPHARMACOLOGY (2021)

Article Biochemistry & Molecular Biology

Diterpenes/Diterpenoids and Their Derivatives as Potential Bioactive Leads against Dengue Virus: A Computational and Network Pharmacology Study

Rasel Ahmed Khan et al.

Summary: Dengue fever is a dangerous endemic disease caused by the dengue virus, resulting in millions of deaths worldwide. Some derivatives of diterpenoids exhibit anti-dengue viral properties. In silico studies showed that certain compounds have good binding affinities to viral proteins, suggesting their potential as anti-dengue medications.

MOLECULES (2021)

Article Multidisciplinary Sciences

Structure based pharmacophore modeling, virtual screening, molecular docking and ADMET approaches for identification of natural anti-cancer agents targeting XIAP protein

Firoz A. Dain Md Opo et al.

Summary: The study aimed to identify new natural compounds that can induce apoptosis with low toxicity to fight against XIAP related cancer treatment. Through virtual screening, molecular docking, and molecular dynamics simulation, three potential anti-cancer compounds were identified, which require further wet lab evaluation of their efficacy.

SCIENTIFIC REPORTS (2021)

Review Engineering, Chemical

Exhaustive Plant Profile of Dimocarpus longan Lour with Significant Phytomedicinal Properties: A Literature Based-Review

Priyanka Paul et al.

Summary: Dimocarpus longan Lour is a plant with medicinal value, displaying different activities in different disease conditions. Some chemical constituents such as gallic acid, ellagic acid, and corilagin exhibited good anti-cancer activity.

PROCESSES (2021)

Article Chemistry, Medicinal

Compounds Identified from Marine Mangrove Plant (Avicennia alba) as Potential Antiviral Drug Candidates against WDSV, an In-Silico Approach

Mohammed Othman Aljahdali et al.

Summary: Walleye dermal sarcoma virus (WDSV) is a retrovirus affecting walleye fishes, causing tumors with no effective antiviral treatment. This study identified potential antiviral compounds from a marine plant, successfully selecting three promising candidates through computational screening.

MARINE DRUGS (2021)

Article Biochemistry & Molecular Biology

Deciphering the Interactions of Bioactive Compounds in Selected Traditional Medicinal Plants against Alzheimer's Diseases via Pharmacophore Modeling, Auto-QSAR, and Molecular Docking Approaches

Oluwafemi Adeleke Ojo et al.

Summary: Flavonoid compounds from medicinal plants were evaluated for their inhibitory role on AChE, BChE, and MAO activity, with pharmacophore modeling, auto-QSAR prediction, and molecular studies used. The study produced pharmacophore models that identified active compounds with a high success rate, and machine learning-based models were used to predict bioactivities with promising results. Docking studies revealed potential lead compounds for drug improvement against neurodegenerative diseases.

MOLECULES (2021)

Review Environmental Sciences

Candidate antiviral drugs for COVID-19 and their environmental implications: a comprehensive analysis

Partha Biswas et al.

Summary: SARS-CoV-2 emerged as a new global threat, causing widespread deaths and economic crises. While progress has been made in vaccine development, effective treatments for infected patients remain elusive. Repurposing existing drugs has shown promise, with some demonstrating therapeutic efficacy against the virus. Plasma therapies have also been utilized in patient treatment.

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2021)

Article Health Care Sciences & Services

Analysis of SYK Gene as a Prognostic Biomarker and Suggested Potential Bioactive Phytochemicals as an Alternative Therapeutic Option for Colorectal Cancer: An In-Silico Pharmaco-Informatics Investigation

Partha Biswas et al.

Summary: The study identifies SYK gene as a potential prognostic biomarker for colorectal cancer (CRC), with increased expression in CRC samples and its correlation with survival rate. Furthermore, potential phytochemicals targeting SYK kinase protein were evaluated through molecular docking, showing promising stability for CRC treatment after clinical trials.

JOURNAL OF PERSONALIZED MEDICINE (2021)

Review Agronomy

ANTIVIRAL EFFECTS OF BACTERIOCIN AGAINST ANIMAL-TO-HUMAN TRANSMITTABLE MUTATED SARS-COV-2: A SYSTEMATIC REVIEW

Dipta Dey et al.

Summary: This review summarizes the potential of bacteriocins as effective virus entry blockers and infection suppressors against SARS-CoV-2, highlighting their antiviral mechanisms and integrative use with synthetic biology and nanosensor technology for rapid detection. Bacteriocins are suggested as effective antiviral therapeutics and supplements to prevent rapid virus transmission.

FRONTIERS OF AGRICULTURAL SCIENCE AND ENGINEERING (2021)

Article Medicine, Research & Experimental

Target specificity of selective bioactive compounds in blocking α-dystroglycan receptor to suppress Lassa virus infection: an in silico approach

Adittya Arefin et al.

Summary: Lassa hemorrhagic fever, caused by Lassa mammarenavirus (LASV) infection, leads to up to 5000 deaths annually with no vaccine currently available. This study identified three bioactive compounds that can potentially block the entry of LASV into cells and demonstrated the best binding affinity through molecular docking and molecular dynamics simulation experiments. Real-time in vivo studies are ongoing to confirm the potential of these compounds as target-specific drugs.

JOURNAL OF BIOMEDICAL RESEARCH (2021)

Article Agriculture, Dairy & Animal Science

Molecular optimization, docking, and dynamic simulation profiling of selective aromatic phytochemical ligands in blocking the SARS-CoV-2 S protein attachment to ACE2 receptor: an in silico approach of targeted drug designing

Dipta Dey et al.

Summary: This comprehensive in silico study identified five potential aromatic phytochemical ligands with promising pharmacokinetic properties for blocking the ACE2 receptor-SARS-CoV-2 S protein complex formation, indicating Rhinacanthin D as a stable candidate for drug development against the novel coronavirus.

JOURNAL OF ADVANCED VETERINARY AND ANIMAL RESEARCH (2021)

Editorial Material Gastroenterology & Hepatology

Building community in the gut: a role for mucosal serotonin

Jill M. Hoffman et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2020)

Article Engineering, Biomedical

Multiscale in-vitro analysis of photo-activated riboflavin incorporated in an experimental universal adhesive

C. Fu et al.

JOURNAL OF THE MECHANICAL BEHAVIOR OF BIOMEDICAL MATERIALS (2020)

Article Biochemistry & Molecular Biology

GEPIA2: an enhanced web server for large-scale expression profiling and interactive analysis

Zefang Tang et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Genetics & Heredity

GENT2: an updated gene expression database for normal and tumor tissues

Seung-Jin Park et al.

BMC MEDICAL GENOMICS (2019)

Review Pathology

What is the potential of p53 isoforms as a predictive biomarker in the treatment of cancer?

Liam Hayman et al.

EXPERT REVIEW OF MOLECULAR DIAGNOSTICS (2019)

Article Biochemistry & Molecular Biology

Structural and Dynamic Characterizations Highlight the Deleterious Role of SULT1A1 R213H Polymorphism in Substrate Binding

Raju Dash et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Medicine, Research & Experimental

MTBP regulates cell survival and therapeutic sensitivity in TP53 wildtype glioblastomas

Yifu Song et al.

THERANOSTICS (2019)

Review Pharmacology & Pharmacy

Selection of protein conformations for structure-based polypharmacology studies

Luca Pinzi et al.

DRUG DISCOVERY TODAY (2018)

Article Biochemistry & Molecular Biology

GEPIA: a web server for cancer and normal gene expression profiling and interactive analyses

Zefang Tang et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Chemistry, Medicinal

An Integrated Computational Approach for Plant-Based Protein Tyrosine Phosphatase Non-Receptor Type 1 Inhibitors

Shabana Bibi et al.

CURRENT COMPUTER-AIDED DRUG DESIGN (2017)

Review Oncology

TP53 and MDM2 genetic alterations in non-small cell lung cancer: Evaluating their prognostic and predictive value

Christophe Deben et al.

CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY (2016)

Article Chemistry, Medicinal

Current Status of Computer-Aided Drug Design for Type 2 Diabetes

Shabana Bibi et al.

CURRENT COMPUTER-AIDED DRUG DESIGN (2016)

Article Computer Science, Artificial Intelligence

OncoLnc: linking TCGA survival data to mRNAs, miRNAs, and lncRNAs

Jordan Anaya

PEERJ COMPUTER SCIENCE (2016)

Article Chemistry, Multidisciplinary

New Ways to Boost Molecular Dynamics Simulations

Elmar Krieger et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2015)

Review Plant Sciences

Plant derived substances with anti-cancer activity: from folklore to practice

Marcelo Fridlender et al.

FRONTIERS IN PLANT SCIENCE (2015)

Article Chemistry, Physical

Structure and dynamics of TIP3P, TIP4P, and TIP5P water near smooth and atomistic walls of different hydroaffinity

Michael F. Harrach et al.

JOURNAL OF CHEMICAL PHYSICS (2014)

Article Biochemistry & Molecular Biology

Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments

G. Madhavi Sastry et al.

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN (2013)

Article Biochemistry & Molecular Biology

Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal

Jianjiong Gao et al.

SCIENCE SIGNALING (2013)

Review Biochemistry & Molecular Biology

Molecular Dynamic Simulation Insights into the Normal State and Restoration of p53 Function

Ting Fu et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2012)

Review Chemistry, Medicinal

Small molecule agents targeting the p53-MDM2 pathway for cancer therapy

Weisi Wang et al.

MEDICINAL RESEARCH REVIEWS (2012)

Article Oncology

Role of p53 in Cell Death and Human Cancers

Toshinori Ozaki et al.

Cancers (2011)

Article Oncology

High Frequency of p53/MDM2/p14ARF Pathway Abnormalities in Relapsed Neuroblastoma

Jane Carr-Wilkinson et al.

CLINICAL CANCER RESEARCH (2010)

Article Multidisciplinary Sciences

The landscape of somatic copy-number alteration across human cancers

Rameen Beroukhim et al.

NATURE (2010)

Article Biochemistry & Molecular Biology

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

David Warde-Farley et al.

NUCLEIC ACIDS RESEARCH (2010)

Review Biochemistry & Molecular Biology

p53-Induced Apoptosis and Inhibitors of p53

Surendra Kumar Nayak et al.

CURRENT MEDICINAL CHEMISTRY (2009)

Article Chemistry, Medicinal

Identifying and Characterizing Binding Sites and Assessing Druggability

Thomas A. Halgren

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2009)

Article Multidisciplinary Sciences

Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype

Helene R. McMurray et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

New method for fast and accurate binding-site identification and analysis

Tom Halgren

CHEMICAL BIOLOGY & DRUG DESIGN (2007)

Article Biochemical Research Methods

Fast empirical pKa prediction by Ewald summation

Elmar Krieger et al.

JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2006)

Review Oncology

p53 as a target for anti-cancer drug development

Benjamin Pierre Bouchet et al.

CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY (2006)

Article Biochemistry & Molecular Biology

Structural details on mdm2-p53 interaction

SW Chi et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2005)

Review Biochemistry & Molecular Biology

The p53 pathway: positive and negative feedback loops

SL Harris et al.

ONCOGENE (2005)

Article Chemistry, Medicinal

Glide: A new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy

RA Friesner et al.

JOURNAL OF MEDICINAL CHEMISTRY (2004)

Article Chemistry, Medicinal

Synthesis of a novel peptidic photoaffinity probe for the PTP-1B enzyme

M Thérien et al.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2004)