4.6 Article

A Circular RNA Expressed from the FAT3 Locus Regulates Neural Development

Related references

Note: Only part of the references are listed.
Review Biochemistry & Molecular Biology

Long non-coding RNAs in motor neuron development and disease

Vamshidhar R. Vangoor et al.

Summary: Long non-coding RNAs play crucial roles in the expression and development of motor neurons in the nervous system, and disruptions in their effects may contribute to motor neuron diseases. Research on the expression and functions of lncRNAs in motor neurons is shedding light on potential therapeutic targets for various motor neuron diseases.

JOURNAL OF NEUROCHEMISTRY (2021)

Article Cell & Tissue Engineering

Resolving organoid brain region identities by mapping single-cell genomic data to reference atlases

Jonas Simon Fleck et al.

Summary: Complex 3D models resembling brain structures generated from human stem cells provide exciting possibilities for studying brain development, disease, and evolution. However, understanding the heterogeneity observed within and between individual organoids remains a major challenge. Researchers have developed a computational tool (VoxHunt) to assess brain organoid patterning, developmental state, and cell identity through comparisons to spatial and single-cell transcriptome reference datasets.

CELL STEM CELL (2021)

Article Multidisciplinary Sciences

Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy

Emanuel Wyler et al.

Summary: Detailed analysis of SARS-CoV-2 infection in comparison with SARS-CoV reveals a stronger induction of innate immune response, including the upregulation of miRNA-155. Infected cells show broad upregulation of genes, while interferon beta/lambda genes and pro-inflammatory cytokines like IL-6 are expressed in only a small subset of cells. Time analysis suggests that interferon regulatory factors are activated before nuclear factor kappa B in response to infection, with heat shock protein 90 (HSP90) identified as a relevant protein for viral replication and inflammatory cytokine expression.

ISCIENCE (2021)

Article Multidisciplinary Sciences

Transcription factor expression defines subclasses of developing projection neurons highly similar to single-cell RNA-seq subtypes

Whitney E. Heavner et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Biotechnology & Applied Microbiology

Changes in circular RNA expression patterns during human foetal brain development

Bei Jun Chen et al.

GENOMICS (2019)

Article Multidisciplinary Sciences

Circular RNAs are temporospatially regulated throughout development and ageing in the rat

E. Mahmoudi et al.

SCIENTIFIC REPORTS (2019)

Article Biochemistry & Molecular Biology

Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity

Chu-Xiao Liu et al.

Review Genetics & Heredity

The biogenesis, biology and characterization of circular RNAs

Lasse S. Kristensen et al.

NATURE REVIEWS GENETICS (2019)

Article Multidisciplinary Sciences

From Louvain to Leiden: guaranteeing well-connected communities

V. A. Traag et al.

SCIENTIFIC REPORTS (2019)

Article Biochemistry & Molecular Biology

Circular RNAs are abundantly expressed and upregulated during human epidermal stem cell differentiation

Lasse Sommer Kristensen et al.

RNA BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Novel tumour suppressive protein encoded by circular RNA, circ-SHPRH, in glioblastomas

S. Begum et al.

ONCOGENE (2018)

Article Medicine, Research & Experimental

miR-182-5p and miR-183-5p Act as GDNF Mimics in Dopaminergic Midbrain Neurons

Anna-Elisa Roser et al.

MOLECULAR THERAPY-NUCLEIC ACIDS (2018)

Article Medicine, Research & Experimental

Enzyme-free digital counting of endogenous circular RNA molecules in B-cell malignancies

Mette Dahl et al.

LABORATORY INVESTIGATION (2018)

Review Biochemistry & Molecular Biology

Brain Development and Akt Signaling: the Crossroads of Signaling Pathway and Neurodevelopmental Diseases

Long Wang et al.

JOURNAL OF MOLECULAR NEUROSCIENCE (2017)

Article Biochemistry & Molecular Biology

Circ-ZNF609 Is a Circular RNA that Can Be Translated and Functions in Myogenesis

Ivano Legnini et al.

MOLECULAR CELL (2017)

Article Multidisciplinary Sciences

Cell diversity and network dynamics in photosensitive human brain organoids

Giorgia Quadrato et al.

NATURE (2017)

Article Biotechnology & Applied Microbiology

Guided self-organization and cortical plate formation in human brain organoids

Madeline A. Lancaster et al.

NATURE BIOTECHNOLOGY (2017)

Article Neurosciences

MicroRNA-182 Regulates Neurite Outgrowth Involving the PTEN/AKT Pathway

Wu M. Wang et al.

FRONTIERS IN CELLULAR NEUROSCIENCE (2017)

Article Multidisciplinary Sciences

The circular RNA circBIRC6 participates in the molecular circuitry controlling human pluripotency

Chun-Ying Yu et al.

NATURE COMMUNICATIONS (2017)

Article Genetics & Heredity

ciRS-7 exonic sequence is embedded in a long non-coding RNA locus

Steven P. Barrett et al.

PLOS GENETICS (2017)

Article Neurosciences

Cortical Morphogenesis during Embryonic Development Is Regulated by miR-34c and miR-204

Morten T. Veno et al.

FRONTIERS IN MOLECULAR NEUROSCIENCE (2017)

Article Cell Biology

Extensive translation of circular RNAs driven by N6-methyladenosine

Yun Yang et al.

CELL RESEARCH (2017)

Article Biochemistry & Molecular Biology

Circular RNAs are long-lived and display only minimal early alterations in response to a growth factor

Yehoshua Enuka et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs

Dawood B. Dudekulay et al.

RNA BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2

William W. Du et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans

Lesca M. Holdt et al.

NATURE COMMUNICATIONS (2016)

Article Multidisciplinary Sciences

CircRNA-protein complexes: IMP3 protein component defines subfamily of circRNPs

Tim Schneider et al.

SCIENTIFIC REPORTS (2016)

Article Biochemistry & Molecular Biology

Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed

Agnieszka Rybak-Wolf et al.

MOLECULAR CELL (2015)

Article Biochemistry & Molecular Biology

Exon-intron circular RNAs regulate transcription in the nucleus

Zhaoyong Li et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Article Multidisciplinary Sciences

Human cerebral organoids recapitulate gene expression programs of fetal neocortex development

J. Gray Camp et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

Exon-intron circular RNAs regulate transcription in the nucleus

Zhaoyong Li et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Article Medicine, Research & Experimental

Molecular Properties, Functional Mechanisms, and Applications of Sliced siRNA

Guihua Sun et al.

MOLECULAR THERAPY-NUCLEIC ACIDS (2015)

Article Biochemistry & Molecular Biology

Efficient backsplicing produces translatable circular mRNAs

Yang Wang et al.

Article Biotechnology & Applied Microbiology

Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development

Morten T. Veno et al.

GENOME BIOLOGY (2015)

Review Cell Biology

The Cell Biology of Neurogenesis: Toward an Understanding of the Development and Evolution of the Neocortex

Elena Taverna et al.

ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 30 (2014)

Article Biochemistry & Molecular Biology

Complementary Sequence-Mediated Exon Circularization

Xiao-Ou Zhang et al.

Review Biotechnology & Applied Microbiology

Detecting and characterizing circular RNAs

William R. Jeck et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemical Research Methods

Generation of cerebral organoids from human pluripotent stem cells

Madeline A. Lancaster et al.

NATURE PROTOCOLS (2014)

Article Multidisciplinary Sciences

Circular RNA Is Expressed across the Eukaryotic Tree of Life

Peter L. Wang et al.

PLOS ONE (2014)

Article Biochemistry & Molecular Biology

circBase: a database for circular RNAs

Petar Glazar et al.

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Expanded identification and characterization of mammalian circular RNAs

Junjie U. Guo et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

The Long Noncoding RNA RMST Interacts with SOX2 to Regulate Neurogenesis

Shi-Yan Ng et al.

MOLECULAR CELL (2013)

Article Multidisciplinary Sciences

Natural RNA circles function as efficient microRNA sponges

Thomas B. Hansen et al.

NATURE (2013)

Article Multidisciplinary Sciences

Circular RNAs are a large class of animal RNAs with regulatory potency

Sebastian Memczak et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Dicer-independent processing of short hairpin RNAs

Ying Poi Liu et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Circular RNAs are abundant, conserved, and associated with ALU repeats

William R. Jeck et al.

Article Genetics & Heredity

Cell-Type Specific Features of Circular RNA Expression

Julia Salzman et al.

PLOS GENETICS (2013)

Editorial Material Cell Biology

Neurofilaments at a glance

Aidong Yuan et al.

JOURNAL OF CELL SCIENCE (2012)

Article Biochemical Research Methods

Fiji: an open-source platform for biological-image analysis

Johannes Schindelin et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

Transcriptome-wide discovery of circular RNAs in Archaea

Miri Danan et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA

Thomas B. Hansen et al.

EMBO JOURNAL (2011)

Article Neurosciences

The UNC5C Netrin Receptor Regulates Dorsal Guidance of Mouse Hindbrain Axons

Doyeun Kim et al.

JOURNAL OF NEUROSCIENCE (2011)

Article Multidisciplinary Sciences

Control of cortical GABA circuitry development by Nrg1 and ErbB4 signalling

Pietro Fazzari et al.

NATURE (2010)

Article Biochemical Research Methods

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Da Wei Huang et al.

NATURE PROTOCOLS (2009)

Editorial Material Biochemistry & Molecular Biology

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

Da Wei Huang et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

A computational screen for mouse signaling pathways targeted by microRNA clusters

Jianzhen Xu et al.

Article Developmental Biology

Human embryonic stem cells express a unique set of microRNAs

MR Suh et al.

DEVELOPMENTAL BIOLOGY (2004)