Related references
Note: Only part of the references are listed.Evaluation of Nanopore sequencing for Mycobacterium tuberculosis drug susceptibility testing and outbreak investigation: a genomic analysis
Michael B. Hall et al.
LANCET MICROBE (2023)
Nontuberculous Mycobacterial Pulmonary Disease: Clinical Epidemiologic Features, Risk Factors, and Diagnosis The Nontuberculous Mycobacterial Series
Kartik Kumar et al.
CHEST (2022)
Rapid and Accurate Detection of SARS Coronavirus 2 by Nanopore Amplicon Sequencing
Xiao-Xiao Li et al.
FRONTIERS IN MICROBIOLOGY (2022)
Fast multiplex bacterial PCR of bronchoalveolar lavage for antibiotic stewardship in hospitalised patients with pneumonia at risk of Gram-negative bacterial infection (Flagship II): a multicentre, randomised controlled trial
Andrei M. Darie et al.
LANCET RESPIRATORY MEDICINE (2022)
Clinical Performance of Nanopore Targeted Sequencing for Diagnosing Infectious Diseases
Yu Fu et al.
MICROBIOLOGY SPECTRUM (2022)
The application of targeted nanopore sequencing for the identification of pathogens and resistance genes in lower respiratory tract infections
Hongying Zhang et al.
FRONTIERS IN MICROBIOLOGY (2022)
Nanopore long-read-only metagenomics enables complete and high-quality genome reconstruction from mock and complex metagenomes
Lei Liu et al.
MICROBIOME (2022)
Systematic review with meta-analysis of the accuracy of diagnostic tests for COVID-19
Beatriz Boger et al.
AMERICAN JOURNAL OF INFECTION CONTROL (2021)
Combined nanopore adaptive sequencing and enzyme-based host depletion efficiently enriched microbial sequences and identified missing respiratory pathogens
Mingyu Gan et al.
BMC GENOMICS (2021)
Nanopore sequencing as a rapid tool for identification and pathotyping of avian influenza A viruses
Beate M. Crossley et al.
JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION (2021)
Diagnosis of SARS-CoV-2 Infection with LamPORE, a High-Throughput Platform Combining Loop-Mediated Isothermal Amplification and Nanopore Sequencing
Leon Peto et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2021)
Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission, United Kingdom, 2018/19 influenza season
Yifei Xu et al.
EUROSURVEILLANCE (2021)
Cancer Biomarkers Discovery of Methylation Modification With Direct High-Throughput Nanopore Sequencing
Junjie Zhang et al.
FRONTIERS IN GENETICS (2021)
Development and clinical evaluation of a new multiplex PCR assay for a simultaneous diagnosis of tuberculous and nontuberculous mycobacteria
Yeya dit Sadio Sarro et al.
EBIOMEDICINE (2021)
Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing
Nan Wu et al.
RESPIRATORY RESEARCH (2021)
Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples
Kuiama Lewandowski et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2020)
Comparison of the performance of an amplicon sequencing assay based on Oxford Nanopore technology to real-time PCR assays for detecting bacterial biodefense pathogens
Robert Player et al.
BMC GENOMICS (2020)
Preliminary assessment of nanopore-based metagenomic sequencing for the diagnosis of prosthetic joint infection
Chao-xin Wang et al.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2020)
Metagenomic Diagnosis for a Culture-Negative Sample From a Patient With Severe Pneumonia by Nanopore and Next-Generation Sequencing
Kaiying Wang et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2020)
Implications of Error-Prone Long-Read Whole-Genome Shotgun Sequencing on Characterizing Reference Microbiomes
Yu Hu et al.
ISCIENCE (2020)
Evaluation on the use of Nanopore sequencing for direct characterization of coronaviruses from respiratory specimens, and a study on emerging missense mutations in partial RdRP gene of SARS-CoV-2
Wai Sing Chan et al.
VIROLOGY JOURNAL (2020)
Genomic detection of a virus lineage replacement event of dengue virus serotype 2 in Brazil, 2019
Jaqueline Goes de Jesus et al.
MEMORIAS DO INSTITUTO OSWALDO CRUZ (2020)
Epidemiologic and genomic insights on mcr-1-harbouring Salmonella from diarrhoeal outpatients in Shanghai, China, 2006-2016
Xin Lu et al.
EBIOMEDICINE (2019)
Ultra-deep, long-read nanopore sequencing of mock microbial community standards
Samuel M. Nicholls et al.
GIGASCIENCE (2019)
Non-tuberculous mycobacterial pulmonary disease
Steven Cowman et al.
EUROPEAN RESPIRATORY JOURNAL (2019)
Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection
Themoula Charalampous et al.
NATURE BIOTECHNOLOGY (2019)
A novel CRISPR/Cas9 associated technology for sequence-specific nucleic acid enrichment
Richard C. Stevens et al.
PLOS ONE (2019)
Rapid diagnosis of bacterial meningitis by nanopore 16S amplicon sequencing: A pilot study
Jangsup Moon et al.
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2019)
Complete nontuberculous mycobacteria whole genomes using an optimized DNA extraction protocol for long-read sequencing
Jennifer M. Bouso et al.
BMC GENOMICS (2019)
Applying Rapid Whole-Genome Sequencing To Predict Phenotypic Antimicrobial Susceptibility Testing Results among Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates
Pranita D. Tamma et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2019)
Going the Distance: Optimizing RNA-Seq Strategies for Transcriptomic Analysis of Complex Viral Genomes
Daniel P. Depledge et al.
JOURNAL OF VIROLOGY (2019)
Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak
L. E. Kafetzopoulou et al.
SCIENCE (2019)
Development of a high sensitivity TaqMan-based PCR assay for the specific detection of Mycobacterium tuberculosis complex in both pulmonary and extrapulmonary specimens
Hsin-Yao Wang et al.
SCIENTIFIC REPORTS (2019)
Metagenomic identification of severe pneumonia pathogens in mechanically-ventilated patients: a feasibility and clinical validity study
Libing Yang et al.
RESPIRATORY RESEARCH (2019)
Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital
Claire L. Gorrie et al.
CLINICAL INFECTIOUS DISEASES (2018)
Multi and extensively drug-resistant pulmonary tuberculosis: advances in diagnosis and management
Emanuele Pontali et al.
CURRENT OPINION IN PULMONARY MEDICINE (2018)
Development and evaluation of a rapid nucleic acid amplification method to detect influenza A and B viruses in human respiratory specimens
Sonja Elf et al.
DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2018)
Nanopore sequencing and assembly of a human genome with ultra-long reads
Miten Jain et al.
NATURE BIOTECHNOLOGY (2018)
Acquisition of virulence genes by a carrier strain gave rise to the ongoing epidemics of meningococcal disease in West Africa
Ola Bronstad Brynildsrud et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Unbiased Strain-Typing of Arbovirus Directly from Mosquitoes Using Nanopore Sequencing: A Field-forward Biosurveillance Protocol
Joseph A. Russell et al.
SCIENTIFIC REPORTS (2018)
Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris
Johanna Rhodes et al.
EMERGING MICROBES & INFECTIONS (2018)
The global tuberculosis epidemic and progress in care, prevention, and research: an overview in year 3 of the End TB era
Katherine Floyd et al.
LANCET RESPIRATORY MEDICINE (2018)
Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices
Nicholas D. Sanderson et al.
BMC GENOMICS (2018)
Estimates of the global, regional, and national morbidity, mortality, and aetiologies of lower respiratory infections in 195 countries, 1990-2016: a systematic analysis for the Global Burden of Disease Study 2016
Christopher Troeger et al.
LANCET INFECTIOUS DISEASES (2018)
Genomic and epidemiological monitoring of yellow fever virus transmission potential
N. R. Faria et al.
SCIENCE (2018)
Tracking microevolution events among ST11 carbapenemase-producing hypervirulent Klebsiella pneumoniae outbreak strains
Ning Dong et al.
EMERGING MICROBES & INFECTIONS (2018)
Identification of pathogens in culture-negative infective endocarditis cases by metagenomic analysis
Jun Cheng et al.
ANNALS OF CLINICAL MICROBIOLOGY AND ANTIMICROBIALS (2018)
Diagnosis of Lower Respiratory Tract Infections using nanopore sequencing
Themoula Charalampous et al.
EUROPEAN RESPIRATORY JOURNAL (2018)
Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing
K. Schmidt et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2017)
Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates
Jamie K. Lemon et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2017)
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
N. R. Faria et al.
NATURE (2017)
Nanopore sequencing detects structural variants in cancer
Alexis L. Norris et al.
CANCER BIOLOGY & THERAPY (2016)
Real-time, portable genome sequencing for Ebola surveillance
Joshua Quick et al.
NATURE (2016)
Three decades of nanopore sequencing
David Deamer et al.
NATURE BIOTECHNOLOGY (2016)
Improved data analysis for the MinION nanopore sequencer
Miten Jain et al.
NATURE METHODS (2015)
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
Joshua Quick et al.
GENOME BIOLOGY (2015)
Sputum induction for the diagnosis of pulmonary tuberculosis: a systematic review and meta-analysis
Y. Gonzalez-Angulo et al.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2012)
Incubation Time of Mycobacterial Cultures: How Long Is Long Enough To Issue a Final Negative Report to the Clinician?
Gaby E. Pfyffer et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2012)
Guidelines for the management of adult lower respiratory tract infections - Full version
M. Woodhead et al.
CLINICAL MICROBIOLOGY AND INFECTION (2011)
Nanopore DNA sequencing with MspA
Ian M. Derrington et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Initiation of Inappropriate Antimicrobial Therapy Results in a Fivefold Reduction of Survival in Human Septic Shock
Anand Kumar et al.
CHEST (2009)
Optimal Sampling Sites and Methods for Detection of Pathogens Possibly Causing Community-Acquired Lower Respiratory Tract Infections
K. Loens et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2009)
Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore
David Stoddart et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Impact of inappropriate antibiotic therapy on mortality in patients with ventilator-associated pneumonia and blood stream infection: A meta-analysis
Effie L. Kuti et al.
JOURNAL OF CRITICAL CARE (2008)
Recognizing a single base in an individual DNA strand: A step toward DNA sequencing in nanopores
N Ashkenasy et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2005)