Related references
Note: Only part of the references are listed.Analysing high-throughput sequencing data in Python with HTSeq 2.0
Givanna H. Putri et al.
BIOINFORMATICS (2022)
Efficient and Complete Detoxification of Polybrominated Diphenyl Ethers in Sediments Achieved by Bioaugmentation with Dehalococcoides and Microbial Ecological Insights
Guofang Xu et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2022)
Dehalogenation of Polybrominated Diphenyl Ethers and Polychlorinated Biphenyls Catalyzed by a Reductive Dehalogenase in Dehalococcoides mccartyi Strain MB
Guofang Xu et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2022)
Dehalobium species implicated in 2,3,7,8-tetrachlorodibenzo-p-dioxin dechlorination in the contaminated sediments of Sydney Harbour Estuary
Matthew Lee et al.
MARINE POLLUTION BULLETIN (2022)
Diversity of organohalide respiring bacteria and reductive dehalogenases that detoxify polybrominated diphenyl ethers in E-waste recycling sites
Siyan Zhao et al.
ISME JOURNAL (2022)
Resilience of organohalide-detoxifying microbial community to oxygen stress in sewage sludge
Guofang Xu et al.
WATER RESEARCH (2022)
Salinity controls soil microbial community structure and function in coastal estuarine wetlands
Guangliang Zhang et al.
ENVIRONMENTAL MICROBIOLOGY (2021)
Interspecies metabolite transfer and aggregate formation in a co-culture of Dehalococcoides and Sulfurospirillum dehalogenating tetrachloroethene to ethene
Stefan Kruse et al.
ISME JOURNAL (2021)
Release, transformation, and risk factors of polybrominated diphenyl ethers from landfills to the surrounding environments: A review
Yifan Zhang et al.
ENVIRONMENT INTERNATIONAL (2021)
Environmental occurrence and remediation of emerging organohalides: A review
Haozheng He et al.
ENVIRONMENTAL POLLUTION (2021)
Acceleration of polychlorinated biphenyls remediation in soil via sewage sludge amendment
Guofang Xu et al.
JOURNAL OF HAZARDOUS MATERIALS (2021)
Insights into the Occurrence, Fate, and Impacts of Halogenated Flame Retardants in Municipal Wastewater Treatment Plants
Guofang Xu et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2021)
Persistent Organic Pollutants (POPs) and Related Chemicals in the Global Environment: Some Personal Reflections
Kevin C. Jones
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2021)
Potential Role of Methanogens in Microbial Reductive Dechlorination of Organic Chlorinated Pollutants In Situ
Jing Yuan et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2021)
Spatial Distribution, Bioconversion and Ecological Risk of PCBs and PBDEs in the Surface Sediment of Contaminated Urban Rivers: A Nationwide Study in China
Qihong Lu et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2021)
Long-Range Transport, Trophic Transfer, and Ecological Risks of Organophosphate Esters in Remote Areas
Jie Fu et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2021)
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
Mose Manni et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Common irrigation drivers of freshwater salinisation in river basins worldwide
Josefin Thorslund et al.
NATURE COMMUNICATIONS (2021)
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale
Carlos P. Cantalapiedra et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Substrate-dependent competition and cooperation relationships between Geobacter and Dehalococcoides for their organohalide respiration
Yongyi Liang et al.
ISME COMMUNICATIONS (2021)
Haloadaptation: insights from comparative modeling studies between halotolerant and non-halotolerant dehalogenases
Mohamed Faraj Edbeib et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2020)
Inhibitory effects of metal ions on reductive dechlorination of polychlorinated biphenyls and perchloroethene in distinct organohalide-respiring bacteria
Qihong Lu et al.
ENVIRONMENT INTERNATIONAL (2020)
Groundwater level observations in 250,000 coastal US wells reveal scope of potential seawater intrusion
Scott Jasechko et al.
NATURE COMMUNICATIONS (2020)
Salinity Is a Key Determinant for Soil Microbial Communities in a Desert Ecosystem
Kaoping Zhang et al.
MSYSTEMS (2019)
Development of microbial community within the cathodic biofilm of single-chamber air-cathode microbial fuel cell
Guofang Xu et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2019)
Microbial synergistic interactions for reductive dechlorination of polychlorinated biphenyls
Shanquan Wang et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2019)
Tetrachloroethene primes reductive dechlorination of polychlorinated biphenyls in a river sediment microcosm
Guofang Xu et al.
WATER RESEARCH (2019)
Biofilms: The Microbial Protective Clothing in Extreme Environments
Wen Yin et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen et al.
NATURE BIOTECHNOLOGY (2019)
Linking Microbial Community Structure to Trait Distributions and Functions Using Salinity as an Environmental Filter
Kristin M. Rath et al.
MBIO (2019)
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang et al.
PEERJ (2019)
A general framework for quantitatively assessing ecological stochasticity
Daliang Ning et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Linking bacterial community composition to soil salinity along environmental gradients
Kristin M. Rath et al.
ISME JOURNAL (2019)
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2019)
Increased salinity triggers significant changes in the functional proteins of ANAMMOX bacteria within a biofilm community
Yabing Meng et al.
CHEMOSPHERE (2018)
Long-Term Impacts on Groundwater and Reductive Dechlorination Following Bioremediation in a Highly Characterized Trichloroethene DNAPL Source Area
Charles E. Schaefer et al.
GROUND WATER MONITORING AND REMEDIATION (2018)
Metagenomes from deep Baltic Sea sediments reveal how past and present environmental conditions determine microbial community composition
Ian P. G. Marshall et al.
MARINE GENOMICS (2018)
Diversity and Dynamics of Microbial Community Structure in Different Mangrove, Marine and Freshwater Sediments During Anaerobic Debromination of PBDEs
Ya Fen Wang et al.
FRONTIERS IN MICROBIOLOGY (2018)
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2′s q2-feature-classifier plugin
Nicholas A. Bokulich et al.
MICROBIOME (2018)
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
Christian M. K. Sieber et al.
NATURE MICROBIOLOGY (2018)
Growth of Dehalococcoides mccartyi species in an autotrophic consortium producing limited acetate
Chang Ding et al.
BIODEGRADATION (2018)
Salinity-Aided Selection of Progressive Onset Denitrifiers as a Means of Providing Nitrite for Anammox
Wei Li et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2018)
Strategies of adaptation of microorganisms of the three domains of life to high salt concentrations
Nina Gunde-Cimerman et al.
FEMS MICROBIOLOGY REVIEWS (2018)
metaSPAdes: a new versatile metagenomic assembler
Sergey Nurk et al.
GENOME RESEARCH (2017)
Identification of two organohalide-respiring Dehalococcoidia associated to different dechlorination activities in PCB-impacted marine sediments
Andrea Nuzzo et al.
MICROBIAL CELL FACTORIES (2017)
Microbial community redundancy in anaerobic digestion drives process recovery after salinity exposure
Jo De Vrieze et al.
WATER RESEARCH (2017)
Impact of estuarine gradients on reductive dechlorination of 1,2,3,4-tetrachlorodibenzo-p-dioxin in river sediment enrichment cultures
Hang T. Dam et al.
CHEMOSPHERE (2017)
Traditional and new POPs in environments along the Bohai and Yellow Seas: An overview of China and South Korea
Jing Meng et al.
CHEMOSPHERE (2017)
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
Yu-Wei Wu et al.
BIOINFORMATICS (2016)
Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation
Ye Deng et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Bacterial responses to osmotic challenges
Janet M. Wood
JOURNAL OF GENERAL PHYSIOLOGY (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Binning metagenomic contigs by coverage and composition
Johannes Alneberg et al.
NATURE METHODS (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls
Shanquan Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient
Barbara J. Campbell et al.
ISME JOURNAL (2013)
Identification of 100 fundamental ecological questions
William J. Sutherland et al.
JOURNAL OF ECOLOGY (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Molecular ecological network analyses
Ye Deng et al.
BMC BIOINFORMATICS (2012)
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
Daniel P. R. Herlemann et al.
ISME JOURNAL (2011)
Characterization of the microbial community from the marine sediment of the Venice lagoon capable of reductive dechlorination of coplanar polychlorinated biphenyls (PCBs)
Giulio Zanaroli et al.
JOURNAL OF HAZARDOUS MATERIALS (2010)
Isolation and Characterization of Dehalococcoides sp Strain MB, Which Dechlorinates Tetrachloroethene to trans-1,2-Dichloroethene
Dan Cheng et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Large-scale production of bacterial consortia for remediation of chlorinated solvent-contaminated groundwater
Simon Vainberg et al.
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2009)
Spatial distribution of subtidal meiobenthos along estuarine gradients in two southern European estuaries (Portugal)
Ana Sofia Alves et al.
JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM (2009)
Dehalorespiration with polychlorinated biphenyls by an anaerobic ultramicrobacterium
Harold D. May et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Concurrent Ethene Generation and Growth of Dehalococcoides Containing Vinyl Chloride Reductive Dehalogenase Genes During an Enhanced Reductive Dechlorination Field Demonstration
Charlotte Scheutz et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2008)
RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen et al.
NUCLEIC ACIDS RESEARCH (2007)
Levels of PCDD/PCDFs and PCBs in edible marine species and human intake: A literature review
Jose L. Domingo et al.
ENVIRONMENT INTERNATIONAL (2007)
Microbial reductive dechlorination of weathered and exogenous co-planar polychlorinated biphenyls (PCBs) in an anaerobic sediment of Venice Lagoon
G. Zanaroli et al.
BIODEGRADATION (2006)
Phylogenetic analysis of TCE-dechlorinating consortia enriched on a variety of electron donors
RA Freeborn et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2005)
Microbial dechlorination of dioxins in estuarine enrichment cultures: effects of respiratory conditions and priming compound on community structure and dechlorination patterns
QS Fu et al.
MARINE ENVIRONMENTAL RESEARCH (2005)
Phenol and catechol biodegradation by the haloalkaliphile Halomonas campisalis:: Influence of pH and salinity
VA Alva et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2003)
Microbial reductive dechlorination of pre-existing PCBs and spiked 2,3,4,5,6-pentachlorobiphenyl in anaerobic slurries of a contaminated sediment of Venice Lagoon (Italy)
F Fava et al.
FEMS MICROBIOLOGY ECOLOGY (2003)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)
Share Paper
