Related references
Note: Only part of the references are listed.Unprecedented organelle genomic variations in morning glories reveal independent evolutionary scenarios of parasitic plants and the diversification of plant mitochondrial complexes
Yanxiang Lin et al.
BMC BIOLOGY (2022)
Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants
Jia-Yu Xue et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2022)
High Level of Aristolochic Acid Detected With a Unique Genomic Landscape Predicts Early UTUC Onset After Renal Transplantation in Taiwan
Hong-Yue Lai et al.
FRONTIERS IN ONCOLOGY (2022)
Synonymous mutations in representative yeast genes are mostly strongly non-neutral
Xukang Shen et al.
NATURE (2022)
Fragaria mitogenomes evolve rapidly in structure but slowly in sequence and incur frequent multinucleotide mutations mediated by microinversions
Weishu Fan et al.
NEW PHYTOLOGIST (2022)
Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity
Manyi Sun et al.
BMC BIOLOGY (2022)
Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants
Remi Allio et al.
NATURE COMMUNICATIONS (2021)
Gene expression underlying floral epidermal specialization in Aristolochia fimbriata (Aristolochiaceae)
Harold Suarez-Baron et al.
ANNALS OF BOTANY (2021)
A living bridge between two enemies: haustorium structure and evolution across parasitic flowering plants
Luiza Teixeira-Costa
BRAZILIAN JOURNAL OF BOTANY (2021)
Detecting de novo mitochondrial mutations in angiosperms with highly divergent evolutionary rates
Amanda K. Broz et al.
GENETICS (2021)
Shifts from cis-to trans-splicing of five mitochondrial introns in Tolypanthus maclurei
Runxian Yu et al.
PEERJ (2021)
Discordant Phylogenomic Placement of Hydnoraceae and Lactoridaceae Within Piperales Using Data From All Three Genomes
Matthias Jost et al.
FRONTIERS IN PLANT SCIENCE (2021)
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
Patricia P. Chan et al.
NUCLEIC ACIDS RESEARCH (2021)
Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome
Liuyu Qin et al.
NATURE PLANTS (2021)
Ancient Mitochondrial Gene Transfer between Fungi and the Orchids
Brandon T. Sinn et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants
Alexis R. Sullivan et al.
GENOME BIOLOGY AND EVOLUTION (2020)
Extensive Shifts from Cis- to Trans-splicing of Gymnosperm Mitochondrial Introns
Wenhu Guo et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
The First Plastid Genome of the Holoparasitic Genus Prosopanche (Hydnoraceae)
Matthias Jost et al.
PLANTS-BASEL (2020)
Multichromosomal structure and foreign tracts in the Ombrophytum subterraneum (Balanophoraceae) mitochondrial genome
M. Emilia Roulet et al.
PLANT MOLECULAR BIOLOGY (2020)
The draft mitochondrial genome of Magnolia biondii and mitochondrial phylogenomics of angiosperms
Shanshan Dong et al.
PLOS ONE (2020)
Interchangeable parts: The evolutionarily dynamic tRNA population in plant mitochondria
Jessica M. Warren et al.
MITOCHONDRION (2020)
Variation in protein gene and intron content among land plant mitogenomes
Jeffrey P. Mower
MITOCHONDRION (2020)
MSH1 is required for maintenance of the low mutation rates in plant mitochondrial and plastid genomes
Zhiqiang Wu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
Jian-Jun Jin et al.
GENOME BIOLOGY (2020)
Phylogenomic Insights into Deep Phylogeny of Angiosperms Based on Broad Nuclear Gene Sampling
Lingxiao Yang et al.
PLANT COMMUNICATIONS (2020)
Floral MADS-box protein interactions in the early diverging angiosperm Aristolochia fimbriata Cham. (Aristolochiaceae: Piperales)
Pablo Perez-Mesa et al.
EVOLUTION & DEVELOPMENT (2019)
Sequential horizontal gene transfers from different hosts in a widespread Eurasian parasitic plant, Cynomorium coccineum
Natalie Cusimano et al.
AMERICAN JOURNAL OF BOTANY (2019)
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
Alexey M. Kozlov et al.
BIOINFORMATICS (2019)
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
Xiao-Jian Qu et al.
PLANT METHODS (2019)
Systematic Overview of Aristolochic Acids: Nephrotoxicity, Carcinogenicity, and Underlying Mechanisms
Jiayin Han et al.
FRONTIERS IN PHARMACOLOGY (2019)
The complete organelle genomes of Physochlaina orientalis: Insights into short sequence repeats across seed plant mitochondrial genomes
Carolina L. Gandini et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)
Recombination and intraspecific polymorphism for the presence and absence of entire chromosomes in mitochondrial genomes
Zhiqiang Wu et al.
HEREDITY (2019)
Tension and Resolution: Dynamic, Evolving Populations of Organelle Genomes within Plant Cells
Iain G. Johnston
MOLECULAR PLANT (2019)
Repeats of Unusual Size in Plant Mitochondrial Genomes: Identification, Incidence and Evolution
Emily L. Wynn et al.
G3-GENES GENOMES GENETICS (2019)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Towards a comprehensive picture of C-to-U RNA editing sites in angiosperm mitochondria
Alejandro A. Edera et al.
PLANT MOLECULAR BIOLOGY (2018)
The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination
Shanshan Dong et al.
BMC GENOMICS (2018)
Unparalleled replacement of native mitochondrial genes by foreign homologs in a holoparasitic plant
M. Virginia Sanchez-Puerta et al.
NEW PHYTOLOGIST (2017)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Stem parasitic plant Cuscuta australis (dodder) transfers herbivory-induced signals among plants
Christian Hettenhausen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Ryan R. Wick et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Comparative mitogenomics indicates respiratory competence in parasitic Viscum despite loss of complex I and extreme sequence divergence, and reveals horizontal gene transfer and remarkable variation in genome size
Elizabeth Skippington et al.
BMC PLANT BIOLOGY (2017)
Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic Plant Hydnora visseri (Hydnoraceae)
Julia Naumann et al.
GENOME BIOLOGY AND EVOLUTION (2016)
Ginkgo and Welwitschia Mitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution
Wenhu Guo et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Horizontal gene transfer in parasitic plants
Charles C. Davis et al.
CURRENT OPINION IN PLANT BIOLOGY (2015)
Dynamic evolution of Geranium mitochondrial genomes through multiple horizontal and intracellular gene transfers
Seongjun Park et al.
NEW PHYTOLOGIST (2015)
Miniaturized mitogenome of the parasitic plant Viscum scurruloideum is extremely divergent and dynamic and has lost all nad genes
Elizabeth Skippington et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Major trends in stem anatomy and growth forms in the perianth-bearing Piperales, with special focus on Aristolochia
Sarah T. Wagner et al.
ANNALS OF BOTANY (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
History of Plastid DNA Insertions Reveals Weak Deletion and AT Mutation Biases in Angiosperm Mitochondrial Genomes
Daniel B. Sloan et al.
GENOME BIOLOGY AND EVOLUTION (2014)
The fossilized mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate
Aaron O. Richardson et al.
BMC BIOLOGY (2013)
Plant Mitochondrial Genome Evolution Can Be Explained by DNA Repair Mechanisms
Alan C. Christensen
GENOME BIOLOGY AND EVOLUTION (2013)
One ring to rule them all? Genome sequencing provides new insights into the 'master circle' model of plant mitochondrial DNA structure
Daniel B. Sloan
NEW PHYTOLOGIST (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Mutational Signature of Aristolochic Acid Exposure as Revealed by Whole-Exome Sequencing
Margaret L. Hoang et al.
SCIENCE TRANSLATIONAL MEDICINE (2013)
Massive Mitochondrial Gene Transfer in a Parasitic Flowering Plant Clade
Zhenxiang Xi et al.
PLOS GENETICS (2013)
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
Mark J. Chaisson et al.
BMC BIOINFORMATICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist et al.
SYSTEMATIC BIOLOGY (2012)
Rapid Evolution of Enormous, Multichromosomal Genomes in Flowering Plant Mitochondria with Exceptionally High Mutation Rates
Daniel B. Sloan et al.
PLOS BIOLOGY (2012)
Origins and Recombination of the Bacterial-Sized Multichromosomal Mitochondrial Genome of Cucumber
Andrew J. Alverson et al.
PLANT CELL (2011)
Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes
Jeffrey P. Mower et al.
BMC BIOLOGY (2010)
Comparison of mitochondrial and chloroplast genome segments from three onion (Allium cepa L.) cytoplasm types and identification of a trans-splicing intron of cox2
Sunggil Kim et al.
CURRENT GENETICS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Frequent, phylogenetically local horizontal transfer of the cox1 group I intron in flowering plant mitochondria
M. Virginia Sanchez-Puerta et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Reevaluation of the cox1 group I intron in Araceae and angiosperms indicates a history dominated by loss rather than horizontal transfer
Natalie Cusimano et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants
Guy Drouin et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2008)
Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants
Todd J. Barkman et al.
BMC EVOLUTIONARY BIOLOGY (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
Mikita Suyama et al.
NUCLEIC ACIDS RESEARCH (2006)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Many independent origins of trans splicing of a plant mitochondrial group II intron (vol 59, pg 80, 2004)
YL Qiu et al.
JOURNAL OF MOLECULAR EVOLUTION (2004)