4.4 Article

In silico environmental sampling of emerging fungal pathogens via big data analysis

Related references

Note: Only part of the references are listed.
Editorial Material Microbiology

Environmental Candida auris and the Global Warming Emergence Hypothesis

Arturo Casadevall et al.

Summary: Global warming has been suggested as a contributing factor to the simultaneous emergence of Candida auris as a nosocomial pathogen on different continents. Isolating C. auris from the remote Andaman Islands supports the hypothesis that it is an environmental organism. The slower growth of one environmental isolate at mammalian temperatures suggests recent thermal adaptation, potentially due to climate change.
Article Microbiology

Environmental Isolation of Candida auris from the Coastal Wetlands of Andaman Islands, India

Parth Arora et al.

Summary: Studies have shown that Candida auris may be present in the marine ecosystem, and was isolated from salt marshes and sandy beaches near the Andaman Islands in the Indian Ocean. This suggests that prior to being recognized as a human pathogen, C. auris may have existed in the environment.
Article Biology

Fungal evolution: cellular, genomic and metabolic complexity

Miguel A. Naranjo-Ortiz et al.

BIOLOGICAL REVIEWS (2020)

Article Multidisciplinary Sciences

An investigation of irreproducibility in maximum likelihood phylogenetic inference

Xing-Xing Shen et al.

NATURE COMMUNICATIONS (2020)

Review Engineering, Environmental

Fungicides: An Overlooked Pesticide Class?

Jochen P. Zubrod et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2019)

Article Environmental Sciences

Towards PacBio-based pan-eukaryote metabarcoding using full-length ITS sequences

Leho Tedersoo et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2019)

Review Microbiology

Mycobiome diversity: high-throughput sequencing and identification of fungi

R. Henrik Nilsson et al.

NATURE REVIEWS MICROBIOLOGY (2019)

Letter Immunology

Potential Fifth Clade of Candida auris, Iran, 2018

Nancy A. Chow et al.

EMERGING INFECTIOUS DISEASES (2019)

Review Mycology

Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi

Bing Wu et al.

MYCOLOGY-AN INTERNATIONAL JOURNAL ON FUNGAL BIOLOGY (2019)

Article Biotechnology & Applied Microbiology

Benchmarking of alignment-free sequence comparison methods

Andrzej Zielezinski et al.

GENOME BIOLOGY (2019)

Article Biochemistry & Molecular Biology

The international nucleotide sequence database collaboration

Ilene Karsch-Mizrachi et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Infectious Diseases

Candida auris

Katja Saris et al.

CURRENT OPINION IN INFECTIOUS DISEASES (2018)

Article Biotechnology & Applied Microbiology

Assessment of Passive Traps Combined with High-Throughput Sequencing To Study Airborne Fungal Communities

Jaime Aguayo et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species

Jose F. Munoz et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Present and future Koppen-Geiger climate classification maps at 1-km resolution

Hylke E. Beck et al.

SCIENTIFIC DATA (2018)

Article Microbiology

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

Paul Carini et al.

NATURE MICROBIOLOGY (2017)

Review Microbiology

Azole Antifungal Resistance in Candida albicans and Emerging Non-albicans Candida Species

Sarah G. Whaley et al.

FRONTIERS IN MICROBIOLOGY (2017)

Review Infectious Diseases

Antifungal resistance: current trends and future strategies to combat

Nathan P. Wiederhold

INFECTION AND DRUG RESISTANCE (2017)

Article Microbiology

Long-Distance Dispersal of Fungi

Jacob J. Golan et al.

MICROBIOLOGY SPECTRUM (2017)

Article Microbiology

Candida vulturna pro tempore sp nov., a dimorphic yeast species related to the Candida haemulonis species complex isolated from flowers and clinical sample

Matthias Sipiczki et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Opportunistic fungal pathogen Candida glabrata circulates between humans and yellow-legged gulls

Mohammed Hashim Al-Yasiri et al.

SCIENTIFIC REPORTS (2016)

Article Agronomy

Azole fungicides-understanding resistance mechanisms in agricultural fungal pathogens

Claire L. Price et al.

PEST MANAGEMENT SCIENCE (2015)

Review Microbiology

The lung nnycobiome: an emerging field of the human respiratory microbiome

Linh D. N. Nguyen et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Infectious Diseases

Candida haemulonii complex: species identification and antifungal susceptibility profiles of clinical isolates from Brazil

Livia S. Ramos et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2015)

Review Microbiology

On the reclassification of species assigned to Candida and other anamorphic ascomycetous yeast genera based on phylogenetic circumscription

Heide-Marie Daniel et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2014)

Article Multidisciplinary Sciences

Global diversity and geography of soil fungi

Leho Tedersoo et al.

SCIENCE (2014)

Article Biology

Next-generation phylogenomics

Cheong Xin Chan et al.

BIOLOGY DIRECT (2013)

Article Biochemistry & Molecular Biology

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

Koichiro Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Towards a unified paradigm for sequence-based identification of fungi

Urmas Koljalg et al.

MOLECULAR ECOLOGY (2013)

Article Biochemistry & Molecular Biology

BLAST: a more efficient report with usability improvements

Grzegorz M. Boratyn et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Agriculture, Multidisciplinary

Entry and toxicity of organic pesticides and copper in vineyard streams: Erosion rills jeopardise the efficiency of riparian buffer strips

Renja Bereswill et al.

AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2012)

Review Microbiology

Horizontal gene transfer in fungi

David A. Fitzpatrick

FEMS MICROBIOLOGY LETTERS (2012)

Article Microbiology

Echinocandin Resistance in Two Candida haemulonii Isolates from Pediatric Patients

Marisol Dominguez Muro et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2012)

Article Multidisciplinary Sciences

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

Conrad L. Schoch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Microbiology

Microbial seed banks: the ecological and evolutionary implications of dormancy

Jay T. Lennon et al.

NATURE REVIEWS MICROBIOLOGY (2011)

Article Biochemistry & Molecular Biology

The International Nucleotide Sequence Database Collaboration

Guy Cochrane et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

The Sequence Read Archive

Rasko Leinonen et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Engineering, Environmental

Azole fungicides:: Occurrence and fate in wastewater and surface waters

Maren Kahle et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2008)

Article Biotechnology & Applied Microbiology

Candida ruelliae sp nov., a novel yeast species isolated from flowers of Ruellia sp (Acanthaceae)

Puja Saluja et al.

FEMS YEAST RESEARCH (2008)

Review Soil Science

Cycling of extracellular DNA in the soil environment

David J. Levy-Booth et al.

SOIL BIOLOGY & BIOCHEMISTRY (2007)

Article Biochemistry & Molecular Biology

BOLD: The Barcode of Life Data System (www.barcodinglife.org)

Sujeevan Ratnasingham et al.

MOLECULAR ECOLOGY NOTES (2007)

Article Geosciences, Multidisciplinary

Updated world map of the Koppen-Geiger climate classification

M. C. Peel et al.

HYDROLOGY AND EARTH SYSTEM SCIENCES (2007)

Article Microbiology

Multiple resistance mechanisms among Aspergillus fumigatus mutants with high-level resistance to itraconazole

AM Nascimento et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2003)