Journal
ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY
Volume 42, Issue 8, Pages 1763-1771Publisher
WILEY
DOI: 10.1002/etc.5676
Keywords
Environmental toxicology; Ecotoxicogenomics; Transcriptomics; Wildlife toxicology; Ecological risk assessment
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New approach methods are important for ecological risk assessment and provide alternatives to traditional toxicity tests. The EcoToxChip, a toxicogenomics tool, was developed and tested to support chemical management and environmental monitoring for three model species. The results show that this tool can effectively evaluate gene expression changes associated with chemical exposure, enhancing current efforts for chemical prioritization and environmental management.
New approach methods (NAMs) are increasingly important to help accelerate the pace of ecological risk assessment and offer more ethical, affordable, and efficient alternatives to traditional toxicity tests. In the present study, we describe the development, technical characterization, and initial testing of a toxicogenomics tool, EcoToxChip (384-well quantitative polymerase chain reaction [qPCR] array), to support chemical management and environmental monitoring for three laboratory model species-fathead minnow (Pimephales promelas), African clawed frog (Xenopus laevis), and Japanese quail (Coturnix japonica). Chip design, including gene selection, was informed by a diverse end-user group and quality control metrics (e.g., primer assay, reverse transcription, and PCR efficiency) performed well based on a priori established criteria. Correlation with RNA sequencing (seq) data provided additional confidence in this novel toxicogenomics tool. Although the present study represents an initial testing of only 24 EcoToxChips for each of the model species, the results provide increased confidence in the robustness/reproducibility of EcoToxChips for evaluating perturbations in gene expression associated with chemical exposure and thus, this NAM, combined with early-life stage toxicity testing, could augment current efforts for chemical prioritization and environmental management. Environ Toxicol Chem 2023;00:1-9. (c) 2023 SETAC
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