4.5 Article

Potential of publicly available Beta vulgaris germplasm for sustainable sugarbeet improvement indicated by combining analysis of genetic diversity and historic resistance evaluation

Related references

Note: Only part of the references are listed.
Article Genetics & Heredity

A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.)

J. Mitchell McGrath et al.

Summary: A contiguous assembly of the 'EL10' sugar beet genome was constructed using PacBio long-read sequencing, BioNano optical mapping, Hi-C scaffolding, and Illumina short-read error correction. The EL10.1 assembly is highly congruent with the published sugar beet reference genome, with 96.2% of the genome contained in nine chromosome-sized pseudomolecules.

DNA RESEARCH (2023)

Article Plant Sciences

Large-scale genome-wide association study, using historical data, identifies conserved genetic architecture of cyanogenic glucoside content in cassava (Manihot esculenta Crantz) root

Alex C. Ogbonna et al.

Summary: The study focused on the genetic architecture of hydrogen cyanide in cassava roots, revealing strong heritability and identifying two major loci contributing to HCN concentration. Diagnostic markers for breeding applications were developed, and consistency in trait architecture in African germplasm was validated. The research also provided further evidence for the domestication of sweet and bitter cassava, expanding insights into cyanogenic glucosides in cassava roots and their glycosylated derivatives in plants.

PLANT JOURNAL (2021)

Review Plant Sciences

Status and prospects of genome-wide association studies in plants

Laura Tibbs Cortes et al.

Summary: Genome-wide association studies (GWAS) have become a powerful tool for investigating complex traits, with the development of the mixed model framework reducing false positives. Advances in technology have led to the development of methods to increase computational speed or improve statistical power in GWAS.

PLANT GENOME (2021)

Article Plant Sciences

Using Genome-Wide Predictions to Assess the Phenotypic Variation of a Barley (Hordeum sp.) Gene Bank Collection for Important Agronomic Traits and Passport Information

Yong Jiang et al.

Summary: Genome-wide predictions have high precision in predicting both unordered categorical traits and quantitative traits in barley collection, enhancing the information available for genotyped but not phenotyped accessions. Deeply phenotyped core collections are a promising training population for calibrating genome-wide prediction models, ultimately contributing to the attractiveness and evolution of gene banks as bio-digital resource centers.

FRONTIERS IN PLANT SCIENCE (2021)

Article Biodiversity Conservation

Genetic Diversity and Population Structure of Wild Beets (Beta spp.) from the Western Iberian Peninsula and the Azores and Madeira Islands

Maria Manuela Veloso et al.

Summary: The study reveals genetic introgression between B. macrocarpa and B. vulgaris subsp. maritima in southern Portugal, while significant genetic differentiation is observed among the northern populations of B. vulgaris subsp. maritima, with smaller differentiation among the southern populations.

DIVERSITY-BASEL (2021)

Article Evolutionary Biology

Genome-Wide Association and Selective Sweep Studies Reveal the Complex Genetic Architecture of DMI Fungicide Resistance in Cercospora beticola

Rebecca Spanner et al.

Summary: The rapid and widespread evolution of fungicide resistance poses a challenge for crop disease management. Research on genetic mutations conferring fungicide resistance in plant pathogenic fungi can be identified through genome-wide studies and selective sweep analysis.

GENOME BIOLOGY AND EVOLUTION (2021)

Review Plant Sciences

Exploring the application of wild species for crop improvement in a changing climate

Fangning Zhang et al.

CURRENT OPINION IN PLANT BIOLOGY (2020)

Article Plant Sciences

Cercospora beticola: The intoxicating lifestyle of the leaf spot pathogen of sugar beet

Lorena I. Rangel et al.

MOLECULAR PLANT PATHOLOGY (2020)

Article Biochemistry & Molecular Biology

BvcZR3 and BvHs1pro-1 Genes Pyramiding Enhanced Beet Cyst Nematode (Heterodera schachtii Schm.) Resistance in Oilseed Rape (Brassica napus L.)

Xuanbo Zhong et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Multidisciplinary Sciences

Comparison of TaqMan, KASP and rhAmp SNP genotyping platforms in hexaploid wheat

Habtamu Ayalew et al.

PLOS ONE (2019)

Review Agronomy

The Impact of Genetic Changes during Crop Domestication

Petr Smykal et al.

AGRONOMY-BASEL (2018)

Article Multidisciplinary Sciences

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

Jeffrey C. Glaubitz et al.

PLOS ONE (2014)

Article Biochemical Research Methods

GAPIT: genome association and prediction integrated tool

Alexander E. Lipka et al.

BIOINFORMATICS (2012)

Article Biology

Crop Wild Relatives-Undervalued, Underutilized and under Threat?

Brian V. Ford-Lloyd et al.

BIOSCIENCE (2011)

Article Multidisciplinary Sciences

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

Robert J. Elshire et al.

PLOS ONE (2011)

Article Biochemical Research Methods

TASSEL: software for association mapping of complex traits in diverse samples

Peter J. Bradbury et al.

BIOINFORMATICS (2007)

Article Biology

Current knowledge of gene flow in plants: implications for transgene flow

NC Ellstrand

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2003)

Article Agronomy

Identification and exploitation of novel disease resistance genes in sugar beet

SA Francis et al.

PEST MANAGEMENT SCIENCE (2003)