4.6 Article

Spatial expression patterns of genes encoding sugar sensors in leaves of C4 and C3 grasses

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Elucidating the role of SWEET13 in phloem loading of the C4 grass Setaria viridis

Lily Chen et al.

Summary: This study investigates the role of SWEET13 homologues in the apoplastic phloem loading of C-4 grasses. The research shows abundant expression levels of SWEET13 homologues in C-4 species, indicating their potential role in high-capacity sugar transport and providing evidence for an apoplastic phloem loading pathway. Immuno-localization results and transport kinetics studies further support the hypothesis, demonstrating the importance of SWEETs in the efficient transport of glucose and sucrose in Setaria and possibly other C-4 species.

PLANT JOURNAL (2022)

Article Multidisciplinary Sciences

Photosynthetic assimilation of CO2 regulates TOR activity

Manuel J. Mallen-Ponce et al.

Summary: This study reveals that carbon assimilation through the Calvin-Benson-Bassham cycle regulates TOR signaling in the model microalga Chlamydomonas reinhardtii, likely through the synthesis of key amino acids.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Plant Sciences

Functional characterization and analysis of transcriptional regulation of sugar transporter SWEET13c in sugarcane Saccharum spontaneum

Xiuting Hua et al.

Summary: A regulatory network module for SsSWEET13c was proposed in the developmental gradient of leaf and circadian rhythm in S. spontaneum. These results provide a novel understanding of the function and regulation of SWEET13c during the sugar transport and biomass production in S. spontaneum.

BMC PLANT BIOLOGY (2022)

Review Plant Sciences

The tip of the iceberg: emerging roles of TORC1, and its regulatory functions in plant cells

Javier Martinez Pacheco et al.

Summary: TOR is a conserved protein kinase that plays a central role in coordinating cell growth and metabolism in plants, regulated by sugar availability and inorganic compounds in the soil. Lack of TOR or dysregulation of its signaling can have significant impacts on plant growth and development, with phytohormones playing a key role in downstream physiological effects of TOR.

JOURNAL OF EXPERIMENTAL BOTANY (2021)

Article Biology

Bundle sheath suberisation is required for C4 photosynthesis in a Setaria viridis mutant

Florence R. Danila et al.

Summary: C-4 photosynthesis is improved by altering the ABCG transporter gene associated with suberin synthesis, demonstrating that a functional suberin lamellae is crucial for efficient photosynthesis in plants like S. viridis.

COMMUNICATIONS BIOLOGY (2021)

Article Plant Sciences

Distinct C4 sub-types and C3 bundle sheath isolation in the Paniceae grasses

Jacob D. Washburn et al.

Summary: The enzymatic machinery underlying photosynthesis in C-4 plants can vary, with some species accumulating transcripts and enzymes from multiple C-4 acid decarboxylases, while others predominantly use one type of decarboxylase. Additionally, a bundle sheath isolation procedure has been developed for a close C-3 species in the Paniceae tribe, allowing for preliminary exploration of C-4 sub-type evolution.

PLANT DIRECT (2021)

Article Plant Sciences

Shedding Light on the Dynamic Role of the Target of Rapamycin Kinase in the Fast-Growing C4 Species Setaria viridis, a Suitable Model for Biomass Crops

Viviane Cristina Heinzen da Silva et al.

Summary: The TOR kinase pathway affects growth by integrating energy and nutrient availability into metabolism, but the response to TORC suppression in Setaria viridis is less pronounced compared to Arabidopsis thaliana, possibly due to differences in nutrient use efficiency and biosynthetic growth promotion mechanisms between the two species.

FRONTIERS IN PLANT SCIENCE (2021)

Review Plant Sciences

Finding the C4 sweet spot: cellular compartmentation of carbohydrate metabolism in C4 photosynthesis

Robert T. Furbank et al.

Summary: The two-cell type C-4 photosynthetic pathway requires both anatomical and biochemical specialization to achieve a functional CO2-concentrating mechanism. Partitioning of carbohydrate synthesis between the cell types of C-4 leaves shows that sucrose is predominantly synthesized in the mesophyll cells and starch in the bundle sheath cells. This partitioning may be a consequence of C-4 metabolism or a requirement for its evolution and efficient operation.

JOURNAL OF EXPERIMENTAL BOTANY (2021)

Article Biochemistry & Molecular Biology

Evidence for phloem loading via the abaxial bundle sheath cells in maize leaves

Margaret Bezrutczyk et al.

Summary: This study used single-cell RNA sequencing to investigate the differentiation of bundle sheath (BS) cells in C-4 maize plants, revealing specific gene expressions related to sucrose and amino acid transporters. The research shows that maize has a mechanism for sucrose transfer towards the phloem through distinct BS cells, suggesting a modification to the canonical phloem loading pathway. These findings provide insights into the unique properties of maize BS cells and their role in phloem loading.

PLANT CELL (2021)

Review Plant Sciences

SnRK1 and trehalose 6-phosphate - two ancient pathways converge to regulate plant metabolism and growth

Elena Baena-Gonzalez et al.

CURRENT OPINION IN PLANT BIOLOGY (2020)

Review Biochemistry & Molecular Biology

Trehalose 6-phosphate signalling and impact on crop yield

Matthew J. Paul et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2020)

Article Plant Sciences

Multiple mechanisms for enhanced plasmodesmata density in disparate subtypes of C4 grasses

Florence R. Danila et al.

JOURNAL OF EXPERIMENTAL BOTANY (2018)

Article Genetics & Heredity

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Jisen Zhang et al.

NATURE GENETICS (2018)

Article Multidisciplinary Sciences

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

John T. Love et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Improved maize reference genome with single-molecule technologies

Yinping Jiao et al.

NATURE (2017)

Article Biochemical Research Methods

Salmon provides fast and bias-aware quantification of transcript expression

Rob Patro et al.

NATURE METHODS (2017)

Review Plant Sciences

Evolution of carbonic anhydrase in C4 plants

Martha Ludwig

CURRENT OPINION IN PLANT BIOLOGY (2016)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Review Plant Sciences

The evolutionary ecology of C4 plants

Pascal-Antoine Christin et al.

NEW PHYTOLOGIST (2014)

Article Biotechnology & Applied Microbiology

Comparative analyses of C4 and C3 photosynthesis in developing leaves of maize and rice

Lin Wang et al.

NATURE BIOTECHNOLOGY (2014)

Article Plant Sciences

Trehalose metabolism in plants

John Edward Lunn et al.

PLANT JOURNAL (2014)

Article Biochemistry & Molecular Biology

pamlX: A Graphical User Interface for PAML

Bo Xu et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Multidisciplinary Sciences

Glucose-TOR signalling reprograms the transcriptome and activates meristems

Yan Xiong et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Rapamycin and Glucose-Target of Rapamycin (TOR) Protein Signaling in Plants

Yan Xiong et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Article Biotechnology & Applied Microbiology

Reference genome sequence of the model plant Setaria

Jeffrey L. Bennetzen et al.

NATURE BIOTECHNOLOGY (2012)

Article Biotechnology & Applied Microbiology

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

Gengyun Zhang et al.

NATURE BIOTECHNOLOGY (2012)

Article Biochemistry & Molecular Biology

Phytozome: a comparative platform for green plant genomics

David M. Goodstein et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Plant Sciences

The C4 plant lineages of planet Earth

Rowan F. Sage et al.

JOURNAL OF EXPERIMENTAL BOTANY (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Article Plant Sciences

Genome-wide atlas of transcription during maize development

Rajandeep S. Sekhon et al.

PLANT JOURNAL (2011)

Article Multidisciplinary Sciences

Isoleucine 309 acts as a C4 catalytic switch that increases ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) carboxylation rate in Flaveria

Spencer M. Whitney et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Plant Sciences

The Regulation of Gene Expression Required for C-4 Photosynthesis

Julian M. Hibberd et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 61 (2010)

Article Multidisciplinary Sciences

Genome sequencing and analysis of the model grass Brachypodium distachyon

John P. Vogel et al.

NATURE (2010)

Article Genetics & Heredity

The developmental dynamics of the maize leaf transcriptome

Pinghua Li et al.

NATURE GENETICS (2010)

Article Plant Sciences

Evolution of C4 Photosynthesis-Looking for the Master Switch

Peter Westhoff et al.

PLANT PHYSIOLOGY (2010)

Article Biochemistry & Molecular Biology

Evolution of C4 Phosphoenolpyruvate Carboxykinase in Grasses, from Genotype to Phenotype

Pascal-Antoine Christin et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Plant Sciences

Role of the Rice Hexokinases OsHXK5 and OsHXK6 as Glucose Sensors

Jung-Il Cho et al.

PLANT PHYSIOLOGY (2009)

Article Biochemistry & Molecular Biology

Evidence for a role of hexokinases as conserved glucose sensors in both monocot and dicot plant species

Jung-Il Cho et al.

PLANT SIGNALING & BEHAVIOR (2009)

Article Multidisciplinary Sciences

A central integrator of transcription networks in plant stress and energy signalling

Elena Baena-Gonzalez et al.

NATURE (2007)

Article Plant Sciences

Diversity of Kranz anatomy and biochemistry in C4 eudicots

Riyadh Muhaidat et al.

AMERICAN JOURNAL OF BOTANY (2007)

Article Plant Sciences

Key innovations in the evolution of Kranz anatomy and C4 vein pattern in Flavea (Asteraceae)

Athena D. McKown et al.

AMERICAN JOURNAL OF BOTANY (2007)

Article Plant Sciences

Compartmentation in plant metabolism

John E. Lunn

JOURNAL OF EXPERIMENTAL BOTANY (2007)

Article Biochemistry & Molecular Biology

The TIGR Rice Genome Annotation Resource: Improvements and new features

Shu Ouyang et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemical Research Methods

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis

BIOINFORMATICS (2006)

Review Plant Sciences

Sugar sensing and signaling in plants: Conserved and novel mechanisms

Filip Rolland et al.

ANNUAL REVIEW OF PLANT BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

JZ Zhang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Review Plant Sciences

The evolution of C4 photosynthesis

RF Sage

NEW PHYTOLOGIST (2004)

Article Biochemistry & Molecular Biology

AKINβ3, a plant specific SnRK1 protein, is lacking domains present in yeast and mammals non-catalytic β-subunits

L Gissot et al.

PLANT MOLECULAR BIOLOGY (2004)

Article Multidisciplinary Sciences

Trehalose 6-phosphate is indispensable for carbohydrate utilization and growth in Arabidopsis thaliana

H Schluepmann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Plant Sciences

Gene duplication, neofunctionalization, and the evolution of C4 photosynthesis

RK Monson

INTERNATIONAL JOURNAL OF PLANT SCIENCES (2003)

Review Plant Sciences

The C-4 pathway: an efficient CO2 pump

S von Caemmerer et al.

PHOTOSYNTHESIS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Domain fusion between SNF1-related kinase subunits during plant evolution

V Lumbreras et al.

EMBO REPORTS (2001)

Review Plant Sciences

The growth response of C4 plants to rising atmospheric CO2 partial pressure:: a reassessment

O Ghannoum et al.

PLANT CELL AND ENVIRONMENT (2000)