4.8 Article

mzapy: An Open-Source Python Library Enabling Efficient Extraction and Processing of Ion Mobility Spectrometry-Mass Spectrometry Data in the MZA File Format

Related references

Note: Only part of the references are listed.
Article Chemistry, Multidisciplinary

LipidOz enables automated elucidation of lipid carbon-carbon double bond positions from ozone-induced dissociation mass spectrometry data

Dylan H. Ross et al.

Summary: A Python tool called LipidOz was developed for the automated determination of lipid double bond positions from complex LC-OzID-IMS-MS data, using a combination of traditional automation and deep learning approaches. The development of this tool provides practical application for lipidomics research.

COMMUNICATIONS CHEMISTRY (2023)

Article Biochemical Research Methods

MZA: A Data Conversion Tool to Facilitate Software Development and Artificial Intelligence Research in Multidimensional Mass Spectrometry

Aivett Bilbao et al.

Summary: This article introduces MZA, a data storage and access tool for mass-to-charge (m/z) designed to facilitate software development and artificial intelligence research in multidimensional mass spectrometry measurements. It provides easy, cross-platform and cross-programming language access to raw MS-data, allowing fast development of new tools in data science programming languages such as Python and R.

JOURNAL OF PROTEOME RESEARCH (2022)

Article Biochemical Research Methods

SciPy 1.0: fundamental algorithms for scientific computing in Python

Pauli Virtanen et al.

NATURE METHODS (2020)

Review Multidisciplinary Sciences

Array programming with NumPy

Charles R. Harris et al.

NATURE (2020)

Article Biochemical Research Methods

pymzML v2.0: introducing a highly compressed and seekable gzip format

M. Koesters et al.

BIOINFORMATICS (2018)

Review Spectroscopy

THE ARC OF MASS SPECTROMETRY EXCHANGE FORMATS IS LONG, BUT IT BENDS TOWARD HDF5

Manor Askenazi et al.

MASS SPECTROMETRY REVIEWS (2017)

Article Multidisciplinary Sciences

Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry

Hannes L. Roest et al.

PLOS ONE (2015)

Article Biochemical Research Methods

imzML - A common data format for the flexible exchange and processing of mass spectrometry imaging data

Thorsten Schramm et al.

JOURNAL OF PROTEOMICS (2012)

Article Biochemical Research Methods

mz5: Space- and Time-efficient Storage of Mass Spectrometry Data Sets

Mathias Wilhelm et al.

MOLECULAR & CELLULAR PROTEOMICS (2012)

Article Biochemical Research Methods

mzML-a Community Standard for Mass Spectrometry Data

Lennart Martens et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)