Related references
Note: Only part of the references are listed.Nanopore sequencing for N1-methylpseudouridine in RNA reveals sequence-dependent discrimination of the modified nucleotide triphosphate during transcription
Aaron M. Fleming et al.
NUCLEIC ACIDS RESEARCH (2023)
Semi-quantitative detection of pseudouridine modifications and type I/II hypermodifications in human mRNAs using direct long-read sequencing
Sepideh Tavakoli et al.
NATURE COMMUNICATIONS (2023)
Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution
Qing Dai et al.
NATURE BIOTECHNOLOGY (2023)
Dynamic 23S rRNA modification ho5C2501 benefits Escherichia coli under oxidative stress
Michel Fasnacht et al.
NUCLEIC ACIDS RESEARCH (2022)
RNA Post-Transcriptional Modifications in Two Large Subunit Intermediates Populated in E. coli Cells Expressing Helicase Inactive R331A DbpA
Eda Koculi et al.
BIOCHEMISTRY (2022)
Chemical Probe-Based Nanopore Sequencing to Selectively Assess the RNA Modifications
Soundhar Ramasamy et al.
ACS CHEMICAL BIOLOGY (2022)
Decoding the epitranscriptional landscape from native RNA sequences
Piroon Jenjaroenpun et al.
NUCLEIC ACIDS RESEARCH (2021)
Direct Nanopore Sequencing of Individual Full Length tRNA Strands
Niki K. Thomas et al.
ACS NANO (2021)
The Ribosome as a Switchboard for Bacterial Stress Response
He Cheng-Guang et al.
FRONTIERS IN MICROBIOLOGY (2021)
RNA modifications detection by comparative Nanopore direct RNA sequencing
Adrien Leger et al.
NATURE COMMUNICATIONS (2021)
Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing
Oguzhan Begik et al.
NATURE BIOTECHNOLOGY (2021)
How RNA modifications regulate the antiviral response*
Matthew G. Thompson et al.
IMMUNOLOGICAL REVIEWS (2021)
Nanopore Dwell Time Analysis Permits Sequencing and Conformational Assignment of Pseudouridine in SARS-CoV-2
Aaron M. Fleming et al.
ACS CENTRAL SCIENCE (2021)
Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling
Sihao Huang et al.
GENOME BIOLOGY (2021)
A molecular-level perspective on the frequency, distribution, and consequences of messenger RNA modifications
Joshua D. Jones et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2020)
Detection and Discrimination of DNA Adducts Differing in Size, Regiochemistry, and Functional Group by Nanopore Sequencing
Intawat Nookaew et al.
CHEMICAL RESEARCH IN TOXICOLOGY (2020)
2′'-O-Methylation can increase the abundance and lifetime of alternative RNA conformational states
Hala Abou Assi et al.
NUCLEIC ACIDS RESEARCH (2020)
Structure of the bacterial ribosome at 2 Å resolution
Zoe L. Watson et al.
ELIFE (2020)
Transcriptome-wide profiling of multiple RNA modifications simultaneously at single-base resolution
Vahid Khoddami et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Where, When, and How: Context-Dependent Functions of RNA Methylation Writers, Readers, and Erasers
Hailing Shi et al.
MOLECULAR CELL (2019)
Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing
Andrew M. Smith et al.
PLOS ONE (2019)
Accurate detection of m6A RNA modifications in native RNA sequences
Huanle Liu et al.
NATURE COMMUNICATIONS (2019)
The Versatile Roles of the tRNA Epitranscriptome during Cellular Responses to Toxic Exposures and Environmental Stress
Sabrina M. Huber et al.
TOXICS (2019)
Pseudouridine-Free Escherichia coli Ribosomes
Michael O'Connor et al.
JOURNAL OF BACTERIOLOGY (2018)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Endogenous rRNA Sequence Variation Can Regulate Stress Response Gene Expression and Phenotype
Chad M. Kurylo et al.
CELL REPORTS (2018)
Biogenesis and iron-dependency of ribosomal RNA hydroxylation
Satoshi Kimura et al.
NUCLEIC ACIDS RESEARCH (2017)
Revealing dynamics of helicase translocation on single-stranded DNA using high-resolution nanopore tweezers
Jonathan M. Craig et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
The quantitative and condition-dependent Escherichia coli proteome
Alexander Schmidt et al.
NATURE BIOTECHNOLOGY (2016)
What do we know about ribosomal RNA methylation in Escherichia coli?
O. V. Sergeeva et al.
BIOCHIMIE (2015)
A complete bacterial genome assembled de novo using only nanopore sequencing data
Nicholas J. Loman et al.
NATURE METHODS (2015)
Quantitative Analysis of rRNA Modifications Using Stable Isotope Labeling and Mass Spectrometry
Anna M. Popova et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)
Quantitative analysis of ribonucleoside modifications in tRNA by HPLC-coupled mass spectrometry
Dan Su et al.
NATURE PROTOCOLS (2014)
Integrative genomics viewer
James T. Robinson et al.
NATURE BIOTECHNOLOGY (2011)
Late steps of ribosome assembly in E-coli are sensitive to a severe heat stress but are assisted by the HSP70 chaperone machine
Olivier Rene et al.
NUCLEIC ACIDS RESEARCH (2011)
Use of Specific Chemical Reagents for Detection of Modified Nucleotides in RNA
Isabelle Behm-Ansmant et al.
JOURNAL OF NUCLEIC ACIDS (2011)
Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA
Satoshi Kimura et al.
NUCLEIC ACIDS RESEARCH (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Structural basis for DNA duplex separation by a superfamily-2 helicase
Katharina Buettner et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)
Identification of Escherichia coli m2 G methyltransferases:: I.: The ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA
Dmitry V. Lesnyak et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba et al.
MOLECULAR SYSTEMS BIOLOGY (2006)
Oxidation of 5-hydroxypyrimidine nucleosides to 5-hydroxyhydantoin and its α-hydroxy-ketone isomer
J Rivière et al.
CHEMICAL RESEARCH IN TOXICOLOGY (2005)
Evolution of a T7 RNA polymerase variant that transcribes 2′-O-methyl RNA
J Chelliserrykattil et al.
NATURE BIOTECHNOLOGY (2004)