Related references
Note: Only part of the references are listed.The SAMBA tool uses long reads to improve the contiguity of genome assemblies
Aleksey V. Zimin et al.
PLOS COMPUTATIONAL BIOLOGY (2022)
Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies
Alexander S. Leonard et al.
NATURE COMMUNICATIONS (2022)
Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history
Yang Zhou et al.
GENOME RESEARCH (2022)
Paternal ancestry of Peruvian creole cattle inferred from Y-chromosome analysis
Claudia E. Yalta-Macedo et al.
LIVESTOCK SCIENCE (2021)
Zoometric Characterization of Creole Cows from the Southern Amazon Region of Peru
Ricardo Encina Ruiz et al.
DIVERSITY-BASEL (2021)
The complete mitochondrial genome of Uruguayan native cattle (Bos taurus)
Shu-Jing Liu et al.
MITOCHONDRIAL DNA PART B-RESOURCES (2020)
De novo assembly of the cattle reference genome with single-molecule sequencing
Benjamin D. Rosen et al.
GIGASCIENCE (2020)
The genetic ancestry of American Creole cattle inferred from uniparental and autosomal genetic markers
Catarina Ginja et al.
SCIENTIFIC REPORTS (2019)
Strategies for Sustainable Use of Indigenous Cattle Genetic Resources in Southern Africa
Cletos Mapiye et al.
DIVERSITY-BASEL (2019)
Genetic origin, admixture and population history of aurochs (Bos primigenius) and primitive European cattle
M. R. Upadhyay et al.
HEREDITY (2017)
MISA-web: a web server for microsatellite prediction
Sebastian Beier et al.
BIOINFORMATICS (2017)
GenomeScope: fast reference-free genome profiling from short reads
Gregory W. Vurture et al.
BIOINFORMATICS (2017)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
The genetic prehistory of domesticated cattle from their origin to the spread across Europe
Amelie Scheu et al.
BMC GENETICS (2015)
Ragout-a reference-assisted assembly tool for bacterial genomes
Mikhail Kolmogorov et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Characterization of bovine MHC DRB3 diversity in Latin American Creole cattle breeds
Guillermo Giovambattista et al.
GENE (2013)
Genetic characterization of Latin-American Creole cattle using microsatellite markers
J. V. Delgado et al.
ANIMAL GENETICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
Mario Stanke et al.
BIOINFORMATICS (2008)
Complete mitochondrial genomes of Bos taurus and Bos indicus provide new insights into intraspecies variation, taxonomy and domestication
S. Hiendleder et al.
CYTOGENETIC AND GENOME RESEARCH (2008)
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
BIOINFORMATICS (2005)
Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
Automated de novo identification of repeat sequence families in sequenced genomes
ZR Bao et al.
GENOME RESEARCH (2002)
MaskerAid:: a performance enhancement to RepeatMasker
JA Bedell et al.
BIOINFORMATICS (2000)