Related references
Note: Only part of the references are listed.Lessons from Drosophila: Engineering Genetic Sexing Strains with Temperature-Sensitive Lethality for Sterile Insect Technique Applications
Thu N. M. Nguyen et al.
INSECTS (2021)
Diversity and Emerging Roles of Enhancer RNA in Regulation of Gene Expression and Cell Fate
Preston R. Arnold et al.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2020)
Conserved associations between G-quadruplex-forming DNA motifs and virulence gene families in malaria parasites
Hunter L. Gage et al.
BMC GENOMICS (2020)
Genome wide distribution of G-quadruplexes and their impact on gene expression in malaria parasites
Elodie Gazanion et al.
PLOS GENETICS (2020)
Exploring the virulence gene interactome withCRISPR/dCas9 in the human malaria parasite
Jessica M. Bryant et al.
MOLECULAR SYSTEMS BIOLOGY (2020)
Long Noncoding RNAs in the Regulation of Asthma: Current Research and Clinical Implications
Xueyi Zhu et al.
FRONTIERS IN PHARMACOLOGY (2020)
DNA helicase RecQ1 regulates mutually exclusive expression of virulence genes in Plasmodium falciparum via heterochromatin alteration
Zhou Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
The cellular landscape of mid-size noncoding RNA
Vincent Boivin et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2019)
Paip2 cooperates with Cbp80 at an active promoter and participates in RNA Polymerase II phosphorylation in Drosophila
Zaur M. Kachaev et al.
FEBS LETTERS (2019)
DDX5 helicase resolves G-quadruplex and is involved in MYC gene transcriptional activation
Guanhui Wu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
R-Loops Promote Antisense Transcription across the Mammalian Genome
Sue Mei Tan-Wong et al.
MOLECULAR CELL (2019)
Long Non-Coding RNAs in the Regulation of Gene Expression: Physiology and Disease
Juliane C. R. Fernandes et al.
NON-CODING RNA (2019)
Functional Classification and Experimental Dissection of Long Noncoding RNAs
Florian Kopp et al.
CELL (2018)
GDV1 induces sexual commitment of malaria parasites by antagonizing HP1-dependent gene silencing
Michael Filarsky et al.
SCIENCE (2018)
Uncovering the essential genes of the human malaria parasite Plasmodium falciparum by saturation mutagenesis
Min Zhang et al.
SCIENCE (2018)
RecQ helicases in the malaria parasite Plasmodium falciparum affect genome stability, gene expression patterns and DNA replication dynamics
Antoine Claessens et al.
PLOS GENETICS (2018)
Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria
Thomas D. Otto et al.
NATURE MICROBIOLOGY (2018)
The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain
Ivelisse Cajigas et al.
MOLECULAR CELL (2018)
Plasmodium falciparum var Gene Is Activated by Its Antisense Long Noncoding RNA
Qingqing Jing et al.
FRONTIERS IN MICROBIOLOGY (2018)
EuPathDB: the eukaryotic pathogen genomics database resource
Cristina Aurrecoechea et al.
NUCLEIC ACIDS RESEARCH (2017)
Unraveling the importance of the malaria parasite helicases
Renu Tuteja
FEBS JOURNAL (2017)
A genetic system to study Plasmodium falciparum protein function
Jakob Birnbaum et al.
NATURE METHODS (2017)
Variant surface antigens of Plasmodium falciparum and their roles in severe malaria
Mats Wahlgren et al.
NATURE REVIEWS MICROBIOLOGY (2017)
An ApiAP2 member regulates expression of clonally variant genes of the human malaria parasite Plasmodium falciparum
Rafael M. Martins et al.
SCIENTIFIC REPORTS (2017)
Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0
Matthew The et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2016)
The multiple functions of RNA helicases as drivers and regulators of gene expression
Cyril F. Bourgeois et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2016)
Trans-acting GC-rich non-coding RNA at var expression site modulates gene counting in malaria parasite
Julien Guizetti et al.
NUCLEIC ACIDS RESEARCH (2016)
Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA
Kate M. Broadbent et al.
BMC GENOMICS (2015)
A bioinformatic survey of RNA-binding proteins in Plasmodium
B. P. Niranjan Reddy et al.
BMC GENOMICS (2015)
Systematic Discovery of Xist RNA Binding Proteins
Ci Chu et al.
CELL (2015)
Dual regulatory effects of non-coding GC-rich elements on the expression of virulence genes in malaria parasites
Guiying Wei et al.
INFECTION GENETICS AND EVOLUTION (2015)
LncRNA Khps1 Regulates Expression of the Proto-oncogene SPHK1 via Triplex-Mediated Changes in Chromatin Structure
Anna Postepska-Igielska et al.
MOLECULAR CELL (2015)
Antisense long noncoding RNAs regulate var gene activation in the malaria parasite Plasmodium falciparum
Inbar Amit-Avraham et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
The PfAlba1 RNA-binding protein is an important regulator of translational timing in Plasmodium falciparum blood stages
Shruthi Sridhar Vembar et al.
GENOME BIOLOGY (2015)
Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum
T. Nicolai Siegel et al.
BMC GENOMICS (2014)
The Noncoding RNA Revolution-Trashing Old Rules to Forge New Ones
Thomas R. Cech et al.
CELL (2014)
Exonuclease-mediated degradation of nascent RNA silences genes linked to severe malaria
Qingfeng Zhang et al.
NATURE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Silence, activate, poise and switch! Mechanisms of antigenic variation in Plasmodium falciparum
Julien Guizetti et al.
CELLULAR MICROBIOLOGY (2013)
A quantitative analysis of Plasmodium falciparum transfection using DNA-loaded erythrocytes
Sandra Hasenkamp et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2013)
H2A.Z and H2B.Z double-variant nucleosomes define intergenic regions and dynamically occupy var gene promoters in the malaria parasite Plasmodium falciparum
Michaela Petter et al.
MOLECULAR MICROBIOLOGY (2013)
PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum
Lubin Jiang et al.
NATURE (2013)
p68/DdX5 Supports β-Catenin & RNAP II during Androgen Receptor Mediated Transcription in Prostate Cancer
Emma L. Clark et al.
PLOS ONE (2013)
Human tRNA genes function as chromatin insulators
Jesse R. Raab et al.
EMBO JOURNAL (2012)
Two long non-coding RNAs generated from subtelomeric regions accumulate in a novel perinuclear compartment in Plasmodium falciparum
Miguel Sierra-Miranda et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2012)
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin et al.
NATURE METHODS (2012)
Identification and molecular characterization of an Alba-family protein from human malaria parasite Plasmodium falciparum
Manish Goyal et al.
NUCLEIC ACIDS RESEARCH (2012)
PfAlbas constitute a new eukaryotic DNA/RNA-binding protein family in malaria parasites
Arnaud Chene et al.
NUCLEIC ACIDS RESEARCH (2012)
Chromatin Isolation by RNA Purification (ChIRP)
Ci Chu et al.
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2012)
MassChroQ: A versatile tool for mass spectrometry quantification
Benoit Valot et al.
PROTEOMICS (2011)
Expression of P. falciparum var Genes Involves Exchange of the Histone Variant H2A.Z at the Promoter
Michaela Petter et al.
PLOS PATHOGENS (2011)
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs
Kate M. Broadbent et al.
GENOME BIOLOGY (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes
Nicolas Smargiasso et al.
BMC GENOMICS (2009)
Genome-wide Analysis of Heterochromatin Associates Clonally Variant Gene Regulation with Perinuclear Repressive Centers in Malaria Parasites
Jose-Juan Lopez-Rubio et al.
CELL HOST & MICROBE (2009)
Plasmodium falciparum heterochromatin protein 1 binds to tri-methylated histone 3 lysine 9 and is linked to mutually exclusive expression of var genes
Karla Perez-Toledo et al.
NUCLEIC ACIDS RESEARCH (2009)
Molecular genetics and comparative genomics reveal RNAi is not functional in malaria parasites
Jake Baum et al.
NUCLEIC ACIDS RESEARCH (2009)
Plasmodium falciparum Heterochromatin Protein 1 Marks Genomic Loci Linked to Phenotypic Variation of Exported Virulence Factors
Christian Flueck et al.
PLOS PATHOGENS (2009)
5′ flanking region of var genes nucleate histone modification patterns linked to phenotypic inheritance of virulence traits in malaria parasites
Jose Juan Lopez-Rubio et al.
MOLECULAR MICROBIOLOGY (2007)
Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis
Kausik Chakrabarti et al.
RNA (2007)
MyProMs, a web server for management and validation of mass spectrometry-based proteomic data
Patrick Poullet et al.
PROTEOMICS (2007)
Regulation of sexual development of Plasmodium by translational repression
Gunnar R. Mair et al.
SCIENCE (2006)
Antigenic variation in Plasmodium falciparum is associated with movement of var loci between subnuclear locations
SA Ralph et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
B2 RNA binds directly to RNA polymerase II to repress transcript synthesis
CA Espinoza et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock
TA Allen et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum
Z Bozdech et al.
PLOS BIOLOGY (2003)
Plasmodium falciparum var genes are regulated by two regions with separate promoters, one upstream of the coding region and a second within the intron
MS Calderwood et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Genome sequence of the human malaria parasite Plasmodium falciparum
MJ Gardner et al.
NATURE (2002)
Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
A Siddiqui-Jain et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Regulatory RNAs
VA Erdmann et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2001)