4.6 Article

Impact of c-di-GMP on the Extracellular Proteome of Rhizobium etli

Related references

Note: Only part of the references are listed.
Article Biology

The Role of Two Linear β-Glucans Activated by c-di-GMP in Rhizobium etli CFN42

Daniel Perez-Mendoza et al.

Summary: Bacterial exopolysaccharides play important roles in bacterial survival, colonization, and host-microbe interactions. Rhizobium etli is the first bacterium capable of producing cellulose and mixed linkage beta-glucan. The production of these polysaccharides is regulated by c-di-GMP levels and contributes to the interaction between the bacterium and its host.

BIOLOGY-BASEL (2022)

Article Biochemical Research Methods

Digging deeper into bile proteome

Sergio Ciordia et al.

Summary: The analysis of biological fluids for disease-related proteins is an important field of research. However, challenges exist, especially in complex matrices like bile. A new procedure described in this study significantly improves protein recovery from rat bile, providing valuable resources for further understanding disease molecular markers.

JOURNAL OF PROTEOMICS (2021)

Review Biochemistry & Molecular Biology

High-specificity local and global c-di-GMP signaling

Regine Hengge

Summary: Bacteria use a combination of local and global c-di-GMP signaling to create a complex signaling network, allowing for specific parallel pathways. Local c-di-GMP signaling is defined by specific knockout phenotypes, direct protein interactions, and cellular c-di-GMP levels remaining below a certain threshold. Adaptive changes in signaling network architecture can further enhance signaling flexibility.

TRENDS IN MICROBIOLOGY (2021)

Article Microbiology

A Cyanobacterial Component Required for Pilus Biogenesis Affects the Exoproteome

Yevgeni Yegorov et al.

Summary: This study identifies novel components of cyanobacterial biofilm regulation and suggests that cyanobacteria may use the same complex for the assembly of motility appendages and protein secretion. This broadens the understanding of pilus assembly/secretion in diverse bacteria and aims to control the formation of cyanobacterial biofilms.
Article Biochemistry & Molecular Biology

Specialization in a Nitrogen-Fixing Symbiosis: Proteome Differences Between Sinorhizobium medicae Bacteria and Bacteroids

Svetlana N. Yurgel et al.

Summary: The proteome of Sinorhizobium medicae WSM419 was analyzed using tandem mass spectrometry, revealing lifestyle bias in the abundance of proteins. Nitrogenase subunits comprised approximately 12% of quantified bacteroid proteins, indicating the importance of nitrogen fixation in symbiosis with Medicago truncatula. Bacterial stress response proteins were induced in bacteroids, suggesting an adaptation to the symbiotic environment.

MOLECULAR PLANT-MICROBE INTERACTIONS (2021)

Review Biochemical Research Methods

Decoding Post-Translational Modification Crosstalk With Proteomics

Mario Leutert et al.

Summary: Post-translational modifications (PTMs) play a crucial role in regulating protein functions and diversifying the proteome. PTM crosstalk, the interaction between multiple PTMs on the same or different proteins, has been elucidated through advanced proteomic technologies, mass spectrometry instrumentation, and bioinformatics, providing insights into the functional consequences of these interactions.

MOLECULAR & CELLULAR PROTEOMICS (2021)

Review Biochemistry & Molecular Biology

Cyclic di-GMP signaling controlling the free-living lifestyle of alpha-proteobacterial rhizobia

Elizaveta Krol et al.

BIOLOGICAL CHEMISTRY (2020)

Review Education, Scientific Disciplines

Arming the troops: Post-translational modification of extracellular bacterial proteins

Suzanne Forrest et al.

SCIENCE PROGRESS (2020)

Review Microbiology

Regulation of Protein Secretion Systems Mediated by Cyclic Diguanylate in Plant-Interacting Bacteria

Francisco Javier Lopez-Baena et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Biochemistry & Molecular Biology

Interplay between the bacterial protein deacetylase CobB and the second messenger c-di-GMP

Zhaowei Xu et al.

EMBO JOURNAL (2019)

Review Microbiology

Protein post-translational modifications in bacteria

Boris Macek et al.

NATURE REVIEWS MICROBIOLOGY (2019)

Review Biochemistry & Molecular Biology

Goals and Challenges in Bacterial Phosphoproteomics

Paula Yague et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Review Microbiology

The Diverse Functional Roles of Elongation Factor Tu (EF-Tu) in Microbial Pathogenesis

Kate L. Harvey et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Biochemistry & Molecular Biology

Recent Advances and Current Trends in Nucleotide Second Messenger Signaling in Bacteria

Regine Hengge et al.

JOURNAL OF MOLECULAR BIOLOGY (2019)

Article Multidisciplinary Sciences

Elongation factor Tu is a multifunctional and processed moonlighting protein

Michael Widjaja et al.

SCIENTIFIC REPORTS (2017)

Article Microbiology

The naringenin-induced exoproteome of Rhizobium etli CE3

Niurka Meneses et al.

ARCHIVES OF MICROBIOLOGY (2017)

Review Microbiology

Common Non-classically Secreted Bacterial Proteins with Experimental Evidence

Guangqiang Wang et al.

CURRENT MICROBIOLOGY (2016)

Review Microbiology

Exploiting the commons: cyclic diguanylate regulation of bacterial exopolysaccharide production

Daniel Perez-Mendoza et al.

CURRENT OPINION IN MICROBIOLOGY (2016)

Article Immunology

Excreted Cytoplasmic Proteins Contribute to Pathogenicity in Staphylococcus aureus

Patrick Ebner et al.

INFECTION AND IMMUNITY (2016)

Article Biotechnology & Applied Microbiology

A novel strategy for protein production using non-classical secretion pathway in Bacillus subtilis

Jingqi Chen et al.

MICROBIAL CELL FACTORIES (2016)

Review Microbiology

Biofilms: an emergent form of bacterial life

Hans-Curt Flemming et al.

NATURE REVIEWS MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms

Lynne Turnbull et al.

NATURE COMMUNICATIONS (2016)

Review Microbiology

Excretion of cytosolic proteins (ECP) in bacteria

Friedrich Goetz et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

Bacterial Rotary Export ATPases Are Allosterically Regulated by the Nucleotide Second Messenger Cyclic-di-GMP

Eleftheria Trampari et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2015)

Editorial Material Genetics & Heredity

Why study moonlighting proteins?

Constance J. Jeffery

FRONTIERS IN GENETICS (2015)

Article Microbiology

Biofilm Matrix Proteins

Jiunn N. C. Fong et al.

MICROBIOLOGY SPECTRUM (2015)

Review Biochemistry & Molecular Biology

Structural analysis of glyceraldehyde-3-phosphate dehydrogenase functional diversity

Michael A. Sirover

INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2014)

Article Multidisciplinary Sciences

Responses to Elevated c-di-GMP Levels in Mutualistic and Pathogenic Plant-Interacting Bacteria

Daniel Perez-Mendoza et al.

PLOS ONE (2014)

Article Multidisciplinary Sciences

A DERL3-associated defect in the degradation of SLC2A1 mediates the Warburg effect

Paula Lopez-Serra et al.

NATURE COMMUNICATIONS (2014)

Review Microbiology

The multifaceted roles of metabolic enzymes in the Paracoccidioides species complex

Caroline M. Marcos et al.

FRONTIERS IN MICROBIOLOGY (2014)

Review Microbiology

Cyclic di-GMP: the First 25 Years of a Universal Bacterial Second Messenger

Ute Romling et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2013)

Article Biotechnology & Applied Microbiology

Role for Rhizobium rhizogenes K84 Cell Envelope Polysaccharides in Surface Interactions

Ana M. Abarca-Grau et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

Secretion of the housekeeping protein glyceraldehyde-3-phosphate dehydrogenase by the LEE-encoded type III secretion system in enteropathogenic Escherichia coli

Laura Aguilera et al.

INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2012)

Article Biochemical Research Methods

Identification of Proteins Associated with the Pseudomonas aeruginosa Biofilm Extracellular Matrix

Masanori Toyofuku et al.

JOURNAL OF PROTEOME RESEARCH (2012)

Article Biotechnology & Applied Microbiology

Identification of Biofilm Matrix-Associated Proteins from an Acid Mine Drainage Microbial Community

Yongqin Jiao et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Biochemical Research Methods

The extracellular proteome of Rhizobium etli CE3 in exponential and stationary growth phase

Niurka Meneses et al.

PROTEOME SCIENCE (2010)

Review Biotechnology & Applied Microbiology

Identification of protein secretion systems and novel secreted proteins in Rhizobium leguminosarum bv. viciae

Martin Krehenbrink et al.

BMC GENOMICS (2008)

Review Immunology

Pattern-recognition receptors in plant innate immunity

Cyril Zipfel

CURRENT OPINION IN IMMUNOLOGY (2008)

Article Biochemical Research Methods

Generalized method for probability-based peptide and protein identification from tandem mass Spectrometry data and sequence database searching

Antonio Ramos-Fernandez et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Article Microbiology

Proteins associated with the Myxococcus xanthus extracellular matrix

Patrick D. Curtis et al.

JOURNAL OF BACTERIOLOGY (2007)

Article Biochemical Research Methods

Blue silver: A very sensitive colloidal Coomassie G-250 staining for proteome analysis

G Candiano et al.

ELECTROPHORESIS (2004)

Article Biochemistry & Molecular Biology

Rhizobium leguminosarum bv. trifolii PssP protein is required for exopolysaccharide biosynthesis and polymerization

A Mazur et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2002)

Article Multidisciplinary Sciences

Protein function - Chaperonin turned insect toxin

N Yoshida et al.

NATURE (2001)