Related references
Note: Only part of the references are listed.Epigenetic targeting of transposon relics: beating the dead horses of the genome?
Iris Sammarco et al.
EPIGENETICS (2022)
DNA methylation and histone modifications induced by abiotic stressors in plants
Karolina Czajka et al.
GENES & GENOMICS (2022)
stepRNA: Identification of Dicer cleavage signatures and passenger strand lengths in small RNA sequences
Ben Murcott et al.
FRONTIERS IN BIOINFORMATICS (2022)
A Synthetic Approach to Reconstruct the Evolutionary and Functional Innovations of the Plant Histone Variant H2A.W
Bingkun Lei et al.
CURRENT BIOLOGY (2021)
Role of Chromatin Architecture in Plant Stress Responses: An Update
Sneha Lata Bhadouriya et al.
FRONTIERS IN PLANT SCIENCE (2021)
Polycomb mutant partially suppresses DNA hypomethylation-associated phenotypes in Arabidopsis
Martin Rougee et al.
LIFE SCIENCE ALLIANCE (2021)
Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin
Jaemyung Choi et al.
ELIFE (2021)
Remodeller-variant tag team slams transposons
Paul B. Talbert et al.
NATURE CELL BIOLOGY (2021)
The chromatin remodeler DDM1 prevents transposon mobility through deposition of histone variant H2A.W
Akihisa Osakabe et al.
NATURE CELL BIOLOGY (2021)
The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation
Pierre Bourguet et al.
NATURE COMMUNICATIONS (2021)
Pathway conversion enables a double-lock mechanism to maintain DNA methylation and genome stability
Li He et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
The impacts of flowering phenology on the reproductive success of the narrow endemic Nouelia insignis Franch. (Asteraceae)
FangYan Liu et al.
ECOLOGY AND EVOLUTION (2021)
Comprehensive Mechanism of Gene Silencing and Its Role in Plant Growth and Development
Ahmed H. El-Sappah et al.
FRONTIERS IN PLANT SCIENCE (2021)
DNA Methylation and Histone H1 Jointly Repress Transposable Elements and Aberrant Intragenic Transcripts
Jaemyung Choi et al.
MOLECULAR CELL (2020)
Mobile genomics: tools and techniques for tackling transposons
Kathryn O'Neill et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2020)
Arabidopsis retrotransposon virus-like particles and their regulation by epigenetically activated small RNA
Seung Cho Lee et al.
GENOME RESEARCH (2020)
Horizontal transfer and evolution of transposable elements in vertebrates
Hua-Hao Zhang et al.
NATURE COMMUNICATIONS (2020)
DNA methylation enables transposable element-driven genome expansion
Wanding Zhou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
DNA methylation is reconfigured at the onset of reproduction in rice shoot apical meristem
Asuka Higo et al.
NATURE COMMUNICATIONS (2020)
RNA-directed DNA Methylation
Robert M. Erdmann et al.
PLOS GENETICS (2020)
Chromatin Remodelers in the 3D Nuclear Compartment
Mauro Magana-Acosta et al.
FRONTIERS IN GENETICS (2020)
Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis
Ranjith K. Papareddy et al.
GENOME BIOLOGY (2020)
Mutation in DDM1 inhibits the homology directed repair of double strand breaks
Seung Hee Choi et al.
PLOS ONE (2019)
Paternally Acting Canonical RNA-Directed DNA Methylation Pathway Genes Sensitize Arabidopsis Endosperm to Paternal Genome Dosage
Prasad R. V. Satyaki et al.
PLANT CELL (2019)
Birth, School, Work, Death, and Resurrection: The Life Stages and Dynamics of Transposable Element Proliferation
Justin P. Blumenstiel
GENES (2019)
Reaction Mechanisms of Pol IV, RDR2, and DCL3 Drive RNA Channeling in the siRNA-Directed DNA Methylation Pathway
Jasleen Singh et al.
MOLECULAR CELL (2019)
CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation
Somsakul Pop Wongpalee et al.
NATURE COMMUNICATIONS (2019)
Decrease in DNA methylation 1 (DDM1) is required for the formation of mCHH islands in maize
Jin Cheng Long et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2019)
Emerging roles of linker histones in regulating chromatin structure and function
Dmitry V. Fyodorov et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)
Redistribution of CHH Methylation and Small Interfering RNAs across the Genome of Tomato ddm1 Mutants
Shira Corem et al.
PLANT CELL (2018)
Loss of RNA-Directed DNA Methylation in Maize Chromomethylase and DDM1-Type Nucleosome Remodeler Mutants
Fang-Fang Fu et al.
PLANT CELL (2018)
DDM1 Represses Noncoding RNA Expression and RNA-Directed DNA Methylation in Heterochromatin
Feng Tan et al.
PLANT PHYSIOLOGY (2018)
Ten things you should know about transposable elements
Guillaume Bourque et al.
GENOME BIOLOGY (2018)
Variants of core histones and their roles in cell fate decisions, development and cancer
Marcus Buschbeck et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)
The effects of becoming taller: direct and pleiotropic effects of artificial selection on plant height in Brassica rapa
Pengjuan Zu et al.
PLANT JOURNAL (2017)
DDM1 and Lsh remodelers allow methylation of DNA wrapped in nucleosomes
David B. Lyons et al.
ELIFE (2017)
DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism
Ali Sharifi-Zarchi et al.
BMC GENOMICS (2017)
Putting DNA methylation in context: from genomes to gene expression in plants
Chad E. Niederhuth et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2017)
The First Rule of Plant Transposable Element Silencing: Location, Location, Location
Meredith J. Sigman et al.
PLANT CELL (2016)
Role of DNA methylation in hybrid vigor in Arabidopsis thaliana
Takahiro Kawanabe et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Mobile small RNAs and their role in regulating cytosine methylation of DNA
Thomas J. Hardcastle et al.
RNA BIOLOGY (2016)
The LSH/DDM1 Homolog MUS-30 Is Required for Genome Stability, but Not for DNA Methylation in Neurospora crassa
Evelina Y. Basenko et al.
PLOS GENETICS (2016)
The chromatin remodeler DDM1 promotes hybrid vigor by regulating salicylic acid metabolism
Qingzhu Zhang et al.
CELL DISCOVERY (2016)
Genome-wide identification of endogenous RNA-directed DNA methylation loci associated with abundant 21-nucleotide siRNAs in Arabidopsis
Jian-Hua Zhao et al.
SCIENTIFIC REPORTS (2016)
Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation
Kaushik Panda et al.
GENOME BIOLOGY (2016)
A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis
Jixian Zhai et al.
CELL (2015)
A brief review of nucleosome structure
Amber R. Cutter et al.
FEBS LETTERS (2015)
Angiosperms Are Unique among Land Plant Lineages in the Occurrence of Key Genes in the RNA-Directed DNA Methylation (RdDM) Pathway
Lu Ma et al.
GENOME BIOLOGY AND EVOLUTION (2015)
DNA methylation pathways and their crosstalk with histone methylation
Jiamu Du et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)
Widely distributed hot and cold spots in meiotic recombination as shown by the sequencing of rice F2 plants
Weina Si et al.
NEW PHYTOLOGIST (2015)
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome
Qing Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Genome-Wide Negative Feedback Drives Transgenerational DNA Methylation Dynamics in Arabidopsis
Tasuku Ito et al.
PLOS GENETICS (2015)
Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis
Todd Blevins et al.
ELIFE (2015)
ARGONAUTE 6 bridges transposable element mRNA-derived siRNAs to the establishment of DNA methylation
Andrea D. McCue et al.
EMBO JOURNAL (2015)
The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes
Jeffrey L. Bennetzen et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 65 (2014)
Widespread and frequent horizontal transfers of transposable elements in plants
Moaine El Baidouri et al.
GENOME RESEARCH (2014)
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
Hume Stroud et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)
Genetic Perturbation of the Maize Methylome
Qing Li et al.
PLANT CELL (2014)
RNA-directed DNA methylation requires stepwise binding of silencing factors to long non-coding RNA
Gudrun Boehmdorfer et al.
PLANT JOURNAL (2014)
The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin
Assaf Zemach et al.
CELL (2013)
How important are transposons for plant evolution?
Damon Lisch
NATURE REVIEWS GENETICS (2013)
Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants
Jiamu Du et al.
CELL (2012)
In Vitro Transcription Activities of Pol IV, Pol V, and RDR2 Reveal Coupling of Pol IV and RDR2 for dsRNA Synthesis in Plant RNA Silencing
Jeremy R. Haag et al.
MOLECULAR CELL (2012)
DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons
Xuehua Zhong et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
RNAi-independent de novo DNA methylation revealed in Arabidopsis mutants of chromatin remodeling gene DDM1
Taku Sasaki et al.
PLANT JOURNAL (2012)
HDA6 Directly Interacts with DNA Methyltransferase MET1 and Maintains Transposable Element Silencing in Arabidopsis
Xuncheng Liu et al.
PLANT PHYSIOLOGY (2012)
Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation
Maria Colome-Tatche et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Loss of DNA methylation affects the recombination landscape in Arabidopsis
Marie Mirouze et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
DNA Methyltransferases Are Required to Induce Heterochromatic Re-Replication in Arabidopsis
Hume Stroud et al.
PLOS GENETICS (2012)
Role of Transposon-Derived Small RNAs in the Interplay between Genomes and Parasitic DNA in Rice
Misuzu Nosaka et al.
PLOS GENETICS (2012)
Regulation and function of DNA methylation in plants and animals
Xin-Jian He et al.
CELL RESEARCH (2011)
Snf2-family proteins: chromatin remodellers for any occasion
Daniel P. Ryan et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2011)
Identification of genes required for de novo DNA methylation in Arabidopsis
Maxim V. C. Greenberg et al.
EPIGENETICS (2011)
Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis
Ikhlak Ahmed et al.
NUCLEIC ACIDS RESEARCH (2011)
Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences
Yongguang Tao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The De Novo Cytosine Methyltransferase DRM2 Requires Intact UBA Domains and a Catalytically Mutated Paralog DRM3 during RNA-Directed DNA Methylation in Arabidopsis thaliana
Ian R. Henderson et al.
PLOS GENETICS (2010)
Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen
R. Keith Slotkin et al.
CELL (2009)
Heterochromatic siRNAs and DDM1 Independently Silence Aberrant 5S rDNA Transcripts in Arabidopsis
Todd Blevins et al.
PLOS ONE (2009)
Plant cytosine-5 DNA methyltransferases: Structure, function, and molecular evolution
Athanasia Pavlopoulou et al.
GENOMICS (2007)
Heritable epigenetic mutation of a transposon-flanked Arabidopsis gene due to lack of the chromatin-remodeling factor DDM1
Hidetoshi Saze et al.
EMBO JOURNAL (2007)
Heterochromatin revisited
Shiv I. S. Grewal et al.
NATURE REVIEWS GENETICS (2007)
Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome
F. Sabot et al.
HEREDITY (2006)
Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis
Bruno Huettel et al.
EMBO JOURNAL (2006)
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
Ian R. Henderson et al.
NATURE GENETICS (2006)
Involvement of the Arabidopsis SWI2/SNF2 chromatin remodeling gene family in DNA damage response and recombination
Hezi Shaked et al.
GENETICS (2006)
Histone and chromatin cross-talk
W Fischle et al.
CURRENT OPINION IN CELL BIOLOGY (2003)
Maintenance of heterochromatin by RNA interference of tandem repeats
RA Martienssen
NATURE GENETICS (2003)
DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis
WJJ Soppe et al.
EMBO JOURNAL (2002)
Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1
AV Gendrel et al.
SCIENCE (2002)
Epigenetic variation in Arabidopsis disease resistance
TL Stokes et al.
GENES & DEVELOPMENT (2002)
Transcriptional gene silencing in plants: targets, inducers and regulators
H Vaucheret et al.
TRENDS IN GENETICS (2001)
DNA methylation and chromatin structure affect transcriptional and post-transcriptional transgene silencing in Arabidopsis
JB Morel et al.
CURRENT BIOLOGY (2000)
Ectopic hypermethylation of flower-specific genes in Arabidopsis
SE Jacobsen et al.
CURRENT BIOLOGY (2000)
Share Paper
