Related references
Note: Only part of the references are listed.Short- and long-read metagenomics of urban and rural South African gut microbiomes reveal a transitional composition and undescribed taxa
Fiona B. Tamburini et al.
NATURE COMMUNICATIONS (2022)
Biosynthetic potential of the global ocean microbiome
Lucas Paoli et al.
NATURE (2022)
A genome and gene catalog of glacier microbiomes
Yongqin Liu et al.
NATURE BIOTECHNOLOGY (2022)
A compendium of 32,277 metagenome-assembled genomes and over 80 million genes from the early-life human gut microbiome
Shuqin Zeng et al.
NATURE COMMUNICATIONS (2022)
Population-Level Configurations of Gut Mycobiome Across 6 Ethnicities in Urban and Rural China
Yang Sun et al.
GASTROENTEROLOGY (2021)
Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes
Joanne B. Emerson et al.
NATURE COMMUNICATIONS (2021)
Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years
Yulin Wang et al.
MICROBIOME (2021)
A genomic catalog of Earth's microbiomes
Stephen Nayfach et al.
NATURE BIOTECHNOLOGY (2021)
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
Pierre-Alain Chaumeil et al.
BIOINFORMATICS (2020)
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
Silas Kieser et al.
BMC BIOINFORMATICS (2020)
Expanded Diversity and Metabolic Versatility of Marine Nitrite-Oxidizing Bacteria Revealed by Cultivation- and Genomics-Based Approaches
Soo-Je Park et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2020)
A new genomic blueprint of the human gut microbiota
Alexandre Almeida et al.
NATURE (2019)
New insights from uncultivated genomes of the global human gut microbiome
Stephen Nayfach et al.
NATURE (2019)
Microbial abundance, activity and population genomic profiling with mOTUs2
Alessio Milanese et al.
NATURE COMMUNICATIONS (2019)
Optimizing de novo genome assembly from PCR-amplified metagenomes
Simon Roux et al.
PEERJ (2019)
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang et al.
PEERJ (2019)
NGSReads Treatment -A Cuckoo Filter-based Tool for Removing Duplicate Reads in NGS Data
Antonio Sergio Cruz Gaia et al.
SCIENTIFIC REPORTS (2019)
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Edoardo Pasolli et al.
CELL (2019)
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Qiyun Zhu et al.
NATURE COMMUNICATIONS (2019)
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
Practical evaluation of 11 de novo assemblers in metagenome assembly
Esmaeil Forouzan et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2018)
Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis
Alexander Crits-Christoph et al.
NATURE (2018)
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
Robert D. Stewart et al.
NATURE COMMUNICATIONS (2018)
MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis
Gherman V. Uritskiy et al.
MICROBIOME (2018)
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Chirag Jain et al.
NATURE COMMUNICATIONS (2018)
metaSPAdes: a new versatile metagenomic assembler
Sergey Nurk et al.
GENOME RESEARCH (2017)
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
Matthew R. Olm et al.
ISME JOURNAL (2017)
Shotgun metagenomics, from sampling to analysis
Christopher Quince et al.
NATURE BIOTECHNOLOGY (2017)
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Donovan H. Parks et al.
NATURE MICROBIOLOGY (2017)
Assembling metagenomes, one community at a time
Andries Johannes van der Walt et al.
BMC GENOMICS (2017)
Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches
Mark T. W. Ebbert et al.
BMC BIOINFORMATICS (2016)
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
Karthik Anantharaman et al.
NATURE COMMUNICATIONS (2016)
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
Emiley A. Eloe-Fadrosh et al.
NATURE COMMUNICATIONS (2016)
Recovering complete and draft population genomes from metagenome datasets
Naseer Sangwan et al.
MICROBIOME (2016)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
The effects of variable sample biomass on comparative metagenomics
Meghan Chafee et al.
ENVIRONMENTAL MICROBIOLOGY (2015)
Experimental Design and Bioinformatics Analysis for the Application of Metagenomics in Environmental Sciences and Biotechnology
Feng Ju et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
High-Throughput Sequencing Technologies
Jason A. Reuter et al.
MOLECULAR CELL (2015)
Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets
Luis M. Rodriguez-R et al.
BIOINFORMATICS (2014)
Binning metagenomic contigs by coverage and composition
Johannes Alneberg et al.
NATURE METHODS (2014)
Tackling soil diversity with the assembly of large, complex metagenomes
Adina Chuang Howe et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Metagenomic species profiling using universal phylogenetic marker genes
Shinichi Sunagawa et al.
NATURE METHODS (2013)
Fulcrum: condensing redundant reads from high-throughput sequencing studies
Matthew S. Burriesci et al.
BIOINFORMATICS (2012)
Counting absolute numbers of molecules using unique molecular identifiers
Teemu Kivioja et al.
NATURE METHODS (2012)
FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads
Haibin Xu et al.
PLOS ONE (2012)
Evolution and classification of the CRISPR-Cas systems
Kira S. Makarova et al.
NATURE REVIEWS MICROBIOLOGY (2011)
Artificial and natural duplicates in pyrosequencing reads of metagenomic data
Beifang Niu et al.
BMC BIOINFORMATICS (2010)
Systematic artifacts in metagenomes from complex microbial communities
Vicente Gomez-Alvarez et al.
ISME JOURNAL (2009)
Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G plus C)-biased genomes
Iwanka Kozarewa et al.
NATURE METHODS (2009)
A large genome center's improvements to the Illumina sequencing system
Michael A. Quail et al.
NATURE METHODS (2008)
Share Paper
