Related references
Note: Only part of the references are listed.Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation
Sijia Liu et al.
MICROBIOME (2022)
Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma
Yunfan Sun et al.
CELL (2021)
Defining and quantifying the core microbiome: Challenges and prospects
Alexander T. Neu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Identification of bacteria-derived HLA-bound peptides in melanoma
Shelly Kalaora et al.
NATURE (2021)
Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids
Wei Gu et al.
NATURE MEDICINE (2021)
Microbial bile acid metabolites modulate gut RORγ+ regulatory T cell homeostasis
Xinyang Song et al.
NATURE (2020)
Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis
David Schafflick et al.
NATURE COMMUNICATIONS (2020)
Adipose tissue derived bacteria are associated with inflammation in obesity and type 2 diabetes
Lucas Massier et al.
GUT (2020)
The human tumor microbiome is composed of tumor type-specific intracellular bacteria
Deborah Nejman et al.
SCIENCE (2020)
LukS-PV Inhibits Hepatocellular Carcinoma Progression by Downregulating HDAC2 Expression
Ziran Wang et al.
MOLECULAR THERAPY-ONCOLYTICS (2020)
PICRUSt2 for prediction of metagenome functions
Gavin M. Douglas et al.
NATURE BIOTECHNOLOGY (2020)
Single-cell transcriptomic architecture and intercellular crosstalk of human intrahepatic cholangiocarcinoma
Min Zhang et al.
JOURNAL OF HEPATOLOGY (2020)
Ultrafast and accurate 16S rRNA microbial community analysis using Kraken 2
Jennifer Lu et al.
MICROBIOME (2020)
A single cell atlas of the human liver tumor microenvironment
Hassan Massalha et al.
MOLECULAR SYSTEMS BIOLOGY (2020)
Comprehensive Integration of Single-Cell Data
Tim Stuart et al.
CELL (2019)
Programmable bacteria induce durable tumor regression and systemic antitumor immunity
Sreyan Chowdhury et al.
NATURE MEDICINE (2019)
Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes
Erick Riquelme et al.
CELL (2019)
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
Dvir Aran et al.
NATURE IMMUNOLOGY (2019)
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2019)
Improved metagenomic analysis with Kraken 2
Derrick E. Wood et al.
GENOME BIOLOGY (2019)
The gut microbiota influences anticancer immunosurveillance and general health
Bertrand Routy et al.
NATURE REVIEWS CLINICAL ONCOLOGY (2018)
Comparative Genomics of Staphylococcus Reveals Determinants of Speciation and Diversification of Antimicrobial Defense
Rosanna Coates-Brown et al.
FRONTIERS IN MICROBIOLOGY (2018)
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
Nicole M. Davis et al.
MICROBIOME (2018)
KEGG: new perspectives on genomes, pathways, diseases and drugs
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2017)
Analysis of Fusobacterium persistence and antibiotic response in colorectal cancer
Susan Bullman et al.
SCIENCE (2017)
Understanding the Holobiont: How Microbial Metabolites Affect Human Health and Shape the Immune System
Thomas Siegmund Postler et al.
CELL METABOLISM (2017)
Bracken: estimating species abundance in metagenomics data
Jennifer Lu et al.
PEERJ COMPUTER SCIENCE (2017)
Microbiome and Anticancer Immunosurveillance
Laurence Zitvogel et al.
CELL (2016)
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis viverrini Associated Cholangiocarcinoma
Kern Rei Chng et al.
EBIOMEDICINE (2016)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Gut Microbiota Are Related to Parkinson's Disease and Clinical Phenotype
Filip Scheperjans et al.
MOVEMENT DISORDERS (2015)
The Mechanism of Enterohepatic Circulation in the Formation of Gallstone Disease
Jian-Shan Cai et al.
JOURNAL OF MEMBRANE BIOLOGY (2014)
Ribosomal Database Project: data and tools for high throughput rRNA analysis
James R. Cole et al.
NUCLEIC ACIDS RESEARCH (2014)
Intestinal microbiota determines development of non-alcoholic fatty liver disease in mice
Tiphaine Le Roy et al.
GUT (2013)
Characterization of Gut Microbiomes in Nonalcoholic Steatohepatitis (NASH) Patients: A Connection Between Endogenous Alcohol and NASH
Lixin Zhu et al.
HEPATOLOGY (2013)
Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome
Shin Yoshimoto et al.
NATURE (2013)
Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
Yukihiro Furusawa et al.
NATURE (2013)
Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
Koji Atarashi et al.
NATURE (2013)
Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis
Robert A. Koeth et al.
NATURE MEDICINE (2013)
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Robert C. Edgar
NATURE METHODS (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators
Akihiro Fujimoto et al.
NATURE GENETICS (2012)
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoc et al.
BIOINFORMATICS (2011)
Characterization of Fecal Microbial Communities in Patients with Liver Cirrhosis
Yanfei Chen et al.
HEPATOLOGY (2011)
Metagenomic biomarker discovery and explanation
Nicola Segata et al.
GENOME BIOLOGY (2011)
Effect of Helicobacter bilis Infection on Human Bile Duct Cancer Cells
Satoru Takayama et al.
DIGESTIVE DISEASES AND SCIENCES (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
TLR4 enhances TGF-β signaling and hepatic fibrosis
Ekihiro Seki et al.
NATURE MEDICINE (2007)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Helicobacter pylori and the risk of benign and malignant biliary tract disease
A Cariati et al.
CANCER (2003)
Share Paper
