4.2 Article

Serial femtosecond X-ray crystallography of an anaerobically formed catalytic intermediate of copper amine oxidase

Related references

Note: Only part of the references are listed.
Article Chemistry, Multidisciplinary

Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme

Manuel Maestre-Reyna et al.

Summary: In this study, time-resolved serial femtosecond X-ray crystallography was used to analyze the entanglement between FAD and its redox sensor triad. It was found that this process regulates FAD re-hybridization and protonation.

NATURE CHEMISTRY (2022)

Article Biochemical Research Methods

Microcrystal preparation for serial femtosecond X-ray crystallography of bacterial copper amine oxidase

Takeshi Murakawa et al.

Summary: A convenient method for preparing high-quality microcrystals of a bacterial quinoprotein enzyme has been reported, enabling high-resolution X-ray crystallography studies. This method involves mechanically crushing large crystals, seeding particles, and allowing microcrystals to grow naturally, leading to efficient microcrystal formation. The damage-free structure determined at 2.2 angstrom resolution through serial femtosecond X-ray crystallography was essentially identical to that determined by cryogenic crystallography using synchrotron X-ray radiation.

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS (2021)

Article Chemistry, Multidisciplinary

Observation of substrate diffusion and ligand binding in enzyme crystals using high-repetition-rate mix-and-inject serial crystallography

Suraj Pandey et al.

Summary: This study utilized the high repetition rate of EuXFEL and mix-and-inject technology to observe the initial phase of ceftriaxone binding to Mycobacterium tuberculosis beta-lactamase in real time, demonstrating the importance of this technique for biomedically relevant research.

IUCRJ (2021)

Article Multidisciplinary Sciences

Neutron crystallography of copper amine oxidase reveals keto/enolate interconversion of the quinone cofactor and unusual proton sharing

Takeshi Murakawa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Chemistry, Multidisciplinary

XGANDALF - extended gradient descent algorithm for lattice finding

Yaroslav Gevorkov et al.

ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES (2019)

Article Biochemical Research Methods

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

Dorothee Liebschner et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2019)

Article Multidisciplinary Sciences

In crystallo thermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase

Takeshi Murakawa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Multidisciplinary Sciences

Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis

Medhanjali Dasgupta et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Chemistry, Physical

Structural enzymology using X-ray free electron lasers

Christopher Kupitz et al.

STRUCTURAL DYNAMICS-US (2017)

Article Instruments & Instrumentation

Nanosecond pump-probe device for time-resolved serial femtosecond crystallography developed at SACLA

Minoru Kubo et al.

JOURNAL OF SYNCHROTRON RADIATION (2017)

Article Multidisciplinary Sciences

Hydroxyethyl cellulose matrix applied to serial crystallography

Michihiro Sugahara et al.

SCIENTIFIC REPORTS (2017)

Article Multidisciplinary Sciences

A three-dimensional movie of structural changes in bacteriorhodopsin

Eriko Nango et al.

SCIENCE (2016)

Article Chemistry, Multidisciplinary

Recent developments in CrystFEL

Thomas A. White et al.

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2016)

Article Chemistry, Multidisciplinary

Data processing pipeline for serial femtosecond crystallography at SACLA

Takanori Nakane et al.

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2016)

Article Optics

Accurate determination of segmented X-ray detector geometry

Oleksandr Yefanov et al.

OPTICS EXPRESS (2015)

Article Multidisciplinary Sciences

Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation

Thomas R. M. Barends et al.

SCIENCE (2015)

Article Instruments & Instrumentation

Data acquisition system for X-ray free-electron laser experiments at SACLA

Yasumasa Joti et al.

JOURNAL OF SYNCHROTRON RADIATION (2015)

Article Biochemical Research Methods

Grease matrix as a versatile carrier of proteins for serial crystallography

Michihiro Sugahara et al.

NATURE METHODS (2015)

Article Biochemical Research Methods

Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL

Kunio Hirata et al.

NATURE METHODS (2014)

Article Instruments & Instrumentation

Development of an X-ray pixel detector with multi-port charge-coupled device for X-ray free-electron laser experiments

Takashi Kameshima et al.

REVIEW OF SCIENTIFIC INSTRUMENTS (2014)

Article Chemistry, Multidisciplinary

Cheetah: software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data

Anton Barty et al.

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2014)

Article Biochemical Research Methods

Humidity control and hydrophilic glue coating applied to mounted protein crystals improves X-ray diffraction experiments

Seiki Baba et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2013)

Article Biochemical Research Methods

High-resolution crystal structure of copper amine oxidase from Arthrobacter globiformis: assignment of bound diatomic molecules as O2

Takeshi Murakawa et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Structural Snapshots from the Oxidative Half-reaction of a Copper Amine Oxidase IMPLICATIONS FOR O2 ACTIVATION

Bryan J. Johnson et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2013)

Article Optics

Focusing of X-ray free-electron laser pulses with reflective optics

Hirokatsu Yumoto et al.

NATURE PHOTONICS (2013)

Article Physics, Condensed Matter

Mix and Inject: Reaction Initiation by Diffusion for Time-Resolved Macromolecular Crystallography

Marius Schmidt

ADVANCES IN CONDENSED MATTER PHYSICS (2013)

Review Biochemistry & Molecular Biology

The Role of Protein Crystallography in Defining the Mechanisms of Biogenesis and Catalysis in Copper Amine Oxidase

Valerie J. Klema et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2012)

Article Optics

A compact X-ray free-electron laser emitting in the sub-angstrom region

Tetsuya Ishikawa et al.

NATURE PHOTONICS (2012)

Article Instruments & Instrumentation

Injector for scattering measurements on fully solvated biospecies

U. Weierstall et al.

REVIEW OF SCIENTIFIC INSTRUMENTS (2012)

Article Multidisciplinary Sciences

Femtosecond X-ray protein nanocrystallography

Henry N. Chapman et al.

NATURE (2011)

Article Biochemical Research Methods

Features and development of Coot

P. Emsley et al.

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)

Article Physics, Applied

Gas dynamic virtual nozzle for generation of microscopic droplet streams

D. P. DePonte et al.

JOURNAL OF PHYSICS D-APPLIED PHYSICS (2008)

Article Chemistry, Multidisciplinary

Phaser crystallographic software

Airlie J. McCoy et al.

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2007)

Article Biochemistry & Molecular Biology

Quantum mechanical hydrogen tunneling in bacterial copper amine oxidase reaction

T Murakawa et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2006)

Article Chemistry, Multidisciplinary

Role of copper ion in bacterial copper amine oxidase: Spectroscopic and crystallographic studies of metal-substituted enzymes

S Kishishita et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2003)

Article Multidisciplinary Sciences

Potential for biomolecular imaging with femtosecond X-ray pulses

R Neutze et al.

NATURE (2000)