Related references
Note: Only part of the references are listed.Chasing breeding footprints through structural variations in Cucumis melo and wild relatives
Sevgin Demirci et al.
G3-GENES GENOMES GENETICS (2021)
The pan-genome of the cultivated soybean (PanSoy) reveals an extraordinarily conserved gene content
Davoud Torkamaneh et al.
PLANT BIOTECHNOLOGY JOURNAL (2021)
Local Duplication of TIR-NBS-LRR Gene Marks Clubroot Resistance in Brassica napus cv. Tosca
Piotr M. Kopec et al.
FRONTIERS IN PLANT SCIENCE (2021)
Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids
Philipp E. Bayer et al.
PLANT BIOTECHNOLOGY JOURNAL (2021)
Characterization of disease resistance genes in the Brassica napus pangenome reveals significant structural variation
Aria Dolatabadian et al.
PLANT BIOTECHNOLOGY JOURNAL (2020)
Trait associations in the pangenome of pigeon pea (Cajanus cajan)
Junliang Zhao et al.
PLANT BIOTECHNOLOGY JOURNAL (2020)
Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications
Agnieszka A. Golicz et al.
TRENDS IN GENETICS (2020)
Gene presence-absence variation associates with quantitative Verticillium longisporum disease resistance in Brassica napus
Iulian Gabur et al.
SCIENTIFIC REPORTS (2020)
AthCNV: A Map of DNA Copy Number Variations in the Arabidopsis Genome
Agnieszka Zmienko et al.
PLANT CELL (2020)
A platinum standard pan-genome resource that represents the population structure of Asian rice
Yong Zhou et al.
SCIENTIFIC DATA (2020)
A genome-wide survey of copy number variations reveals an asymmetric evolution of duplicated genes in rice
Fengli Zhao et al.
BMC BIOLOGY (2020)
Pan-Genome of Wild and Cultivated Soybeans
Yucheng Liu et al.
CELL (2020)
Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato
Michael Alonge et al.
CELL (2020)
Plant pan-genomes are the new reference
Philipp E. Bayer et al.
NATURE PLANTS (2020)
Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome
Philipp E. Bayer et al.
PLANT BIOTECHNOLOGY JOURNAL (2019)
A global analysis of CNVs in diverse yak populations using whole-genome resequencing
Hui Wang et al.
BMC GENOMICS (2019)
Insight into the evolution and functional characteristics of the pan-genome assembly from sesame landraces and modern cultivars
Jingyin Yu et al.
PLANT BIOTECHNOLOGY JOURNAL (2019)
Comparative Analysis of Impatiens Leaf Transcriptomes Reveal Candidate Genes for Resistance to Downy Mildew Caused by Plasmopara obducens
Krishna Bhattarai et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice
Qiang Zhao et al.
NATURE GENETICS (2018)
Induction and recovery of copy number variation in banana through gamma irradiation and low-coverage whole-genome sequencing
Sneha Datta et al.
PLANT BIOTECHNOLOGY JOURNAL (2018)
Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus
Bhavna Hurgobin et al.
PLANT BIOTECHNOLOGY JOURNAL (2018)
Analysis of Extreme Phenotype Bulk Copy Number Variation (XP-CNV) Identified the Association of rp1 with Resistance to Goss's Wilt of Maize
Ying Hu et al.
FRONTIERS IN PLANT SCIENCE (2018)
BED-domain-containing immune receptors confer diverse resistance spectra to yellow rust
Clemence Marchal et al.
NATURE PLANTS (2018)
The pangenome of hexaploid bread wheat
Juan D. Montenegro et al.
PLANT JOURNAL (2017)
Copy number variations of CBF genes at the Fr-A2 locus are essential components of winter hardiness in wheat
Tobias Wuerschum et al.
PLANT JOURNAL (2017)
Environmental change drives accelerated adaptation through stimulated copy number variation
Ryan M. Hull et al.
PLOS BIOLOGY (2017)
Targeted deep sequencing of flowering regulators in Brassica napus reveals extensive copy number variation
Sarah Schiessl et al.
SCIENTIFIC DATA (2017)
Post-polyploidisation morphotype diversification associates with gene copy number variation
Sarah Schiessl et al.
SCIENTIFIC REPORTS (2017)
Identification of environmentally stable QTL for resistance against Leptosphaeria maculans in oilseed rape (Brassica napus)
Y. J. Huang et al.
THEORETICAL AND APPLIED GENETICS (2016)
The impact and origin of copy number variations in the Oryza species
Zetao Bai et al.
BMC GENOMICS (2016)
Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location
Agnieszka Zmienko et al.
BMC GENOMICS (2016)
RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants
Pingchuan Li et al.
BMC GENOMICS (2016)
Multi-environment QTL studies suggest a role for cysteine-rich protein kinase genes in quantitative resistance to blackleg disease in Brassica napus
Nicholas J. Larkan et al.
BMC PLANT BIOLOGY (2016)
Genetics and molecular mapping of resistance to Plasmodiophora brassicae pathotypes 2, 3, 5, 6, and 8 in rutabaga (Brassica napus var. napobrassica)
Muhammad Jakir Hasan et al.
GENOME (2016)
High-resolution arrays reveal burden of copy number variations on Parkinson disease genes associated with increased disease risk in random cohorts
Megha N. Murthy et al.
NEUROLOGICAL RESEARCH (2016)
Oilseed rape: learning about ancient and recent polyploid evolution from a recent crop species
A. S. Mason et al.
PLANT BIOLOGY (2016)
An efficient method for measuring copy number variation applied to improvement of nematode resistance in soybean
Tong Geon Lee et al.
PLANT JOURNAL (2016)
Copy number variation at the HvCBF4-HvCBF2 genomic segment is a major component of frost resistance in barley
Enrico Francia et al.
PLANT MOLECULAR BIOLOGY (2016)
Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads
Jiaqiang Dong et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
The pangenome of an agronomically important crop plant Brassica oleracea
Agnieszka A. Golicz et al.
NATURE COMMUNICATIONS (2016)
Sambamba: fast processing of NGS alignment formats
Artem Tarasov et al.
BIOINFORMATICS (2015)
Genome-wide identification of copy number variations between two chicken lines that differ in genetic resistance to Marek's disease
Yiyuan Yan et al.
BMC GENOMICS (2015)
The impact of human copy number variation on gene expression
Eric R. Gamazon et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2015)
Disease Resistance Gene Analogs (RGAs) in Plants
Manoj Kumar Sekhwal et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2015)
Evolution and selection of Rhg1, a copy-number variant nematode-resistance locus
Tong Geon Lee et al.
MOLECULAR ECOLOGY (2015)
SpeedSeq: ultra-fast personal genome analysis and interpretation
Colby Chiang et al.
NATURE METHODS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
Boulos Chalhoub et al.
SCIENCE (2014)
Copy number polymorphism in plant genomes
Agnieszka Zmienko et al.
THEORETICAL AND APPLIED GENETICS (2014)
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
Isobel A. P. Parkin et al.
GENOME BIOLOGY (2014)
Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae
Xiao Lin et al.
BMC GENOMICS (2013)
High presence/absence gene variability in defense-related gene clusters of Cucumis melo
Victor M. Gonzalez et al.
BMC GENOMICS (2013)
Increased copy number at the HvFT1 locus is associated with accelerated flowering time in barley
Rebecca Nitcher et al.
MOLECULAR GENETICS AND GENOMICS (2013)
Copy number variation in potato - an asexually propagated autotetraploid species
Marina Iovene et al.
PLANT JOURNAL (2013)
Aluminum tolerance in maize is associated with higher MATE1 gene copy number
Lyza G. Maron et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Resequencing rice genomes: an emerging new era of rice genomics
Xuehui Huang et al.
TRENDS IN GENETICS (2013)
A genome-wide comparison of NB-LRR type of resistance gene analogs (RGA) in the plant kingdom
Jungeun Kim et al.
MOLECULES AND CELLS (2012)
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
Xun Xu et al.
NATURE BIOTECHNOLOGY (2012)
Non-random distribution of extensive chromosome rearrangements in Brassica napus depends on genome organization
Stephane D. Nicolas et al.
PLANT JOURNAL (2012)
Evolution of a Complex Disease Resistance Gene Cluster in Diploid Phaseolus and Tetraploid Glycine
Tom Ashfield et al.
PLANT PHYSIOLOGY (2012)
Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes
Leah K. McHale et al.
PLANT PHYSIOLOGY (2012)
Dynamic Nucleotide-Binding Site and Leucine-Rich Repeat-Encoding Genes in the Grass Family
Sha Luo et al.
PLANT PHYSIOLOGY (2012)
Copy Number Variation Affecting the Photoperiod-B1 and Vernalization-A1 Genes Is Associated with Altered Flowering Time in Wheat (Triticum aestivum)
Aurora Diaz et al.
PLOS ONE (2012)
Copy Number Variation of Multiple Genes at Rhg1 Mediates Nematode Resistance in Soybean
David E. Cook et al.
SCIENCE (2012)
Molecular mapping and validation of Rlm1 gene for resistance to Leptosphaeria maculans in canola (Brassica napus L.)
Rosy Raman et al.
CROP & PASTURE SCIENCE (2012)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
Detection of copy number variations in rice using array-based comparative genomic hybridization
Ping Yu et al.
BMC GENOMICS (2011)
CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
Alexej Abyzov et al.
GENOME RESEARCH (2011)
Association mapping of quantitative resistance for Leptosphaeria maculans in oilseed rape (Brassica napus L.)
C. Jestin et al.
MOLECULAR BREEDING (2011)
Polyploid formation pathways have an impact on genetic rearrangements in resynthesized Brassica napus
E. Szadkowski et al.
NEW PHYTOLOGIST (2011)
Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome
Cyrille Saintenac et al.
GENOME BIOLOGY (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
The collapse of gene complement following whole genome duplication
David Sankoff et al.
BMC GENOMICS (2010)
Copy Number Variation Shapes Genome Diversity in Arabidopsis Over Immediate Family Generational Scales
Seth DeBolt
GENOME BIOLOGY AND EVOLUTION (2010)
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
Ruth A. Swanson-Wagner et al.
GENOME RESEARCH (2010)
Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors
Meiping Zhang et al.
NUCLEIC ACIDS RESEARCH (2010)
Gene copy-number polymorphism in nature
Daniel R. Schrider et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Extent and structure of linkage disequilibrium in canola quality winter rapeseed (Brassica napus L.)
Wolfgang Ecke et al.
THEORETICAL AND APPLIED GENETICS (2010)
Allelic genome structural variations in maize detected by array comparative genome hybridization
Andre Belo et al.
THEORETICAL AND APPLIED GENETICS (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Mechanisms of change in gene copy number
P. J. Hastings et al.
NATURE REVIEWS GENETICS (2009)
Next-generation sequencing technologies and their implications for crop genetics and breeding
Rajeev K. Varshney et al.
TRENDS IN BIOTECHNOLOGY (2009)
Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content
Nathan M. Springer et al.
PLOS GENETICS (2009)
Boron-toxicity tolerance in barley arising from efflux transporter amplification
Tim Sutton et al.
SCIENCE (2007)
Detection, introgression and localization of genes conferring specific resistance to Leptosphaeria maculans from Brassica rapa into B-napus
M. Leflon et al.
THEORETICAL AND APPLIED GENETICS (2007)
Global variation in copy number in the human genome
Richard Redon et al.
NATURE (2006)
Genome-wide investigation on the genetic variations of rice disease resistance genes
Sihai Yang et al.
PLANT MOLECULAR BIOLOGY (2006)
A genome-wide survey of R gene polymorphisms in Arabidopsis
Erica G. Bakker et al.
PLANT CELL (2006)
Host-microbe interactions: Shaping the evolution of the plant immune response
ST Chisholm et al.
CELL (2006)
Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana
JD Shen et al.
GENETICS (2006)
Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce
H Kuang et al.
PLANT CELL (2004)
A cluster of major specific resistance genes to Leptosphaeria maculans in Brassica napus
R Delourme et al.
PHYTOPATHOLOGY (2004)
Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis
BC Meyers et al.
PLANT CELL (2003)
Control of stomatal distribution on the Arabidopsis leaf surface
JA Nadeau et al.
SCIENCE (2002)
Share Paper
