4.5 Article

Bioinformatic analysis of WxL domain proteins

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Highly accurate protein structure prediction with AlphaFold

John Jumper et al.

Summary: Proteins are essential for life, and accurate prediction of their structures is a crucial research problem. Current experimental methods are time-consuming, highlighting the need for accurate computational approaches to address the gap in structural coverage. Despite recent progress, existing methods fall short of atomic accuracy in protein structure prediction.

NATURE (2021)

Article Biochemistry & Molecular Biology

Pfam: The protein families database in 2021

Jaina Mistry et al.

Summary: The Pfam database has recently added a large number of protein families and domains, made revisions for COVID-19 research, and introduced Pfam-B as a supplement. These updates and improvements can help researchers classify protein sequences more effectively and conduct related studies.

NUCLEIC ACIDS RESEARCH (2021)

Article Biochemistry & Molecular Biology

A census-based estimate of Earth's bacterial and archaeal diversity

Stilianos Louca et al.

PLOS BIOLOGY (2019)

Article Biochemistry & Molecular Biology

The Pfam protein families database in 2019

Sara El-Gebali et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

PDBsum: Structural summaries of PDB entries

Roman A. Laskowski et al.

PROTEIN SCIENCE (2018)

Article Multidisciplinary Sciences

Exploration of the role of the virulence factor ElrA during Enterococcus faecalis cell infection

Natalia Nunez et al.

SCIENTIFIC REPORTS (2018)

Article Biochemical Research Methods

The Phyre2 web portal for protein modeling, prediction and analysis

Lawrence A. Kelley et al.

NATURE PROTOCOLS (2015)

Article Biochemistry & Molecular Biology

SMART: recent updates, new developments and status in 2015

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

InterProScan 5: genome-scale protein function classification

Philip Jones et al.

BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OGIRF

Agathe Bourgogne et al.

GENOME BIOLOGY (2008)

Review Microbiology

Listeria monocytogenes surface proteins:: from genome predictions to function

Helene Bierne et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2007)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Protein structure prediction and analysis using the Robetta server

DE Kim et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

CDART: Protein homology by domain architecture

LY Geer et al.

GENOME RESEARCH (2002)

Article Biochemical Research Methods

The PSIPRED protein structure prediction server

LJ McGuffin et al.

BIOINFORMATICS (2000)