Related references
Note: Only part of the references are listed.Phylogenetic Analysis of SARS-CoV-2 Data Is Difficult
Benoit Morel et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Comparative Genomics Provides Insights into the Taxonomy of Azoarcus and Reveals Separate Origins of Nif Genes in the Proposed Azoarcus and Aromatoleum Genera
Roberto Tadeu Raittz et al.
GENES (2021)
Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England
Nicholas G. Davies et al.
SCIENCE (2021)
SARS-CoV-2 Variant of Concern 202012/01 Has about Twofold Replicative Advantage and Acquires Concerning Mutations
Frederic Grabowski et al.
VIRUSES-BASEL (2021)
Lessons learned 1 year after SARS-CoV-2 emergence leading to COVID-19 pandemic
Kelvin Kai-Wang To et al.
EMERGING MICROBES & INFECTIONS (2021)
SARS-CoV-2 variants combining spike mutations and the absence of ORF8 may be more transmissible and require close monitoring
Filipe Pereira
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2021)
SARS-CoV-2 Lineages and Sub-Lineages Circulating Worldwide: A Dynamic Overview
Eleonora Cella et al.
CHEMOTHERAPY (2021)
Spreading of a new SARS-CoV-2 N501Y spike variant in a new lineage
Philippe Colson et al.
CLINICAL MICROBIOLOGY AND INFECTION (2021)
Structural Modeling of the SARS-CoV-2 Spike/Human ACE2 Complex Interface can Identify High-Affinity Variants Associated with Increased Transmissibility
Hin Hark Gan et al.
JOURNAL OF MOLECULAR BIOLOGY (2021)
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2021)
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil
Nuno R. Faria et al.
SCIENCE (2021)
Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie
Ales Varabyou et al.
GENETICS (2021)
One year into the pandemic: Short-term evolution of SARS-CoV-2 and emergence of new lineages
Fernando Gonzalez-Candelas et al.
INFECTION GENETICS AND EVOLUTION (2021)
Estimating the quarantine failure rate for COVID-19
Meili Li et al.
INFECTIOUS DISEASE MODELLING (2021)
A new coronavirus associated with human respiratory disease in China
Fan Wu et al.
NATURE (2020)
SWeeP: representing large biological sequences datasets in compact vectors
Camilla Reginatto De Pierri et al.
SCIENTIFIC REPORTS (2020)
A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein
Hong Zhou et al.
CURRENT BIOLOGY (2020)
Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study
Gurjit S. Randhawa et al.
PLOS ONE (2020)
Artificial intelligence and machine learning to fight COVID-19
Ahmad Alimadadi et al.
PHYSIOLOGICAL GENOMICS (2020)
Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus
Bette Korber et al.
CELL (2020)
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
Andrew Rambaut et al.
NATURE MICROBIOLOGY (2020)
Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant
Leonid Yurkovetskiy et al.
CELL (2020)
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan S. Candido et al.
SCIENCE (2020)
Genomic recombination events may reveal the evolution of coronavirus and the origin of SARS-CoV-2
Zhenglin Zhu et al.
SCIENTIFIC REPORTS (2020)
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences
Chris-Andre Leimeister et al.
GIGASCIENCE (2019)
Nextstrain: real-time tracking of pathogen evolution
James Hadfield et al.
BIOINFORMATICS (2018)
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection
Hongshuo Song et al.
NATURE COMMUNICATIONS (2018)
GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
Guangchuang Yu et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
GISAID: Global initiative on sharing all influenza data - from vision to reality
Yuelong Shu et al.
EUROSURVEILLANCE (2017)
Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer
Qian Zhang et al.
SCIENTIFIC REPORTS (2017)
Data, disease and diplomacy: GISAID's innovative contribution to global health
Stefan Elbe et al.
GLOBAL CHALLENGES (2017)
An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data
Huan Fan et al.
BMC GENOMICS (2015)
Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics
Ehsaneddin Asgari et al.
PLOS ONE (2015)
RDP4: Detection and analysis of recombination patterns in virus genomes
Darren P. Martin et al.
VIRUS EVOLUTION (2015)
ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking
Matthew D. Wilkerson et al.
BIOINFORMATICS (2010)
Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method
Guohong Albert Wu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
An exact nonparametric method for inferring mosaic structure in sequence triplets
Maciej F. Boni et al.
GENETICS (2007)
Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
D Posada et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
MJ Gibbs et al.
BIOINFORMATICS (2000)
RDP: detection of recombination amongst aligned sequences
D Martin et al.
BIOINFORMATICS (2000)