Related references
Note: Only part of the references are listed.TBK1 Is Required for Host Defense Functions Distinct from Type I IFN Expression and Myeloid Cell Recruitment in Murine Streptococcus pneumoniae Pneumonia
Robert S. Hagan et al.
AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY (2022)
Loss of Ripk3 attenuated neutrophil accumulation in a lipopolysaccharide-induced zebrafish inflammatory model
Wanying Wen et al.
CELL DEATH DISCOVERY (2022)
Exploration of Bacterial Bottlenecks and Streptococcus pneumoniae Pathogenesis by CRISPRi-Seq
Xue Liu et al.
CELL HOST & MICROBE (2021)
Host succinate is an activation signal for Salmonella virulence during intracellular infection
Gili Rosenberg et al.
SCIENCE (2021)
Community-acquired bacterial meningitis
Diederik van de Beek et al.
LANCET (2021)
Determining macrophage versus neutrophil contributions to innate immunity using larval zebrafish
Emily E. Rosowski
DISEASE MODELS & MECHANISMS (2020)
Streptococcus pneumoniae Elaborates Persistent and Prolonged Competent State during Pneumonia-Derived Sepsis
Jingjun Lin et al.
INFECTION AND IMMUNITY (2020)
The Case for Modeling Human Infection in Zebrafish
Margarida C. Gomes et al.
TRENDS IN MICROBIOLOGY (2020)
In vivo dual RNA-seq reveals that neutrophil recruitment underlies differential tissue tropism of Streptococcus pneumoniae
Vikrant Minhas et al.
COMMUNICATIONS BIOLOGY (2020)
An in vivo atlas of host-pathogen transcriptomes during Streptococcus pneumoniae colonization and disease
Adonis D'Mello et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Refining the Pneumococcal Competence Regulon by RNA Sequencing
Jelle Slager et al.
JOURNAL OF BACTERIOLOGY (2019)
Dual RNA-seq identifies human mucosal immunity protein Mucin-13 as a hallmark of Plasmodium exoerythrocytic infection
Gregory M. LaMonte et al.
NATURE COMMUNICATIONS (2019)
Dual RNA-Seq reveals the role of a transcriptional regulator gene in pathogen-host interactions between Pseudomonas plecoglossicida and Epinephelus coioides
Beibei Zhang et al.
FISH & SHELLFISH IMMUNOLOGY (2019)
WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
Yuxing Liao et al.
NUCLEIC ACIDS RESEARCH (2019)
Three New Integration Vectors and Fluorescent Proteins for Use in the Opportunistic Human Pathogen Streptococcus pneumoniae
Lance E. Keller et al.
GENES (2019)
In vivo proteomics identifies the competence regulon and AliB oligopeptide transporter as pathogenic factors in pneumococcal meningitis
Frank Schmidt et al.
PLOS PATHOGENS (2019)
RIPK3 Activation Leads to Cytokine Synthesis that Continues after Loss of Cell Membrane Integrity
Susana L. Orozco et al.
CELL REPORTS (2019)
The Pneumococcal Surface Proteins PspA and PspC Sequester Host C4-Binding Protein To Inactivate Complement C4b on the Bacterial Surface
Kashif S. Haleem et al.
INFECTION AND IMMUNITY (2019)
The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium
Alexander J. Westermann et al.
MBIO (2019)
Shigella sonnei infection of zebrafish reveals that O-antigen mediates neutrophil tolerance and dysentery incidence
Vincenzo Torraca et al.
PLOS PATHOGENS (2019)
Two's company: studying interspecies relationships with dual RNA-seq
Thomas Wolf et al.
CURRENT OPINION IN MICROBIOLOGY (2018)
A complex interplay between the extracellular matrix and the innate immune response to microbial pathogens
Hannah Tomlin et al.
IMMUNOLOGY (2018)
Streptococcus pneumoniae: transmission, colonization and invasion
Jeffrey N. Weiser et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Zebrafish Infection: From Pathogenesis to Cell Biology
Vincenzo Torraca et al.
TRENDS IN CELL BIOLOGY (2018)
Necroptosis and neutrophil-associated disorders
Xiaoliang Wang et al.
CELL DEATH & DISEASE (2018)
Bacterial Pore-Forming Toxins Promote the Activation of Caspases in Parallel to Necroptosis to Enhance Alarmin Release and Inflammation During Pneumonia
Norberto Gonzalez-Juarbe et al.
SCIENTIFIC REPORTS (2018)
Heterogeneity in pneumolysin expression governs the fate of Streptococcus pneumoniae during blood-brain barrier trafficking
Manalee Vishnu Surve et al.
PLOS PATHOGENS (2018)
Burden of Streptococcus pneumoniae and Haemophilus influenzae type b disease in children in the era of conjugate vaccines: global, regional, and national estimates for 2000-15
Brian Wahl et al.
LANCET GLOBAL HEALTH (2018)
Antibiotic-Induced Cell Chaining Triggers Pneumococcal Competence by Reshaping Quorum Sensing to Autocrine-Like Signaling
Arnau Domenech et al.
CELL REPORTS (2018)
Dual Transcriptomics of Host-Pathogen Interaction of Cystic Fibrosis Isolate Pseudomonas aeruginosa PASS1 With Zebra fish
Sheemal S. Kumar et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2018)
An Inflammatory Perspective on Necroptosis
Conor J. Kearney et al.
MOLECULAR CELL (2017)
Neutrophilic NLRP3 inflammasome-dependent IL-1β secretion regulates the γδT17 cell response in respiratory bacterial infections
M. Hassane et al.
MUCOSAL IMMUNOLOGY (2017)
Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host-pathogen transcriptomes
Aaron M. Nuss et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Host-inherent variability influences the transcriptional response of Staphylococcus aureus during in vivo infection
Robert Thaenert et al.
NATURE COMMUNICATIONS (2017)
Quorum sensing integrates environmental cues, cell density and cell history to control bacterial competence
Stefany Moreno-Gamez et al.
NATURE COMMUNICATIONS (2017)
Resolving host-pathogen interactions by dual RNA-seq
Alexander J. Westermann et al.
PLOS PATHOGENS (2017)
Quorum Sensing Regulation of Competence and Bacteriocins in Streptococcus pneumoniae and mutans
Erin Shanker et al.
GENES (2017)
A defect in the mitochondrial protein Mpv17 underlies the transparent casper zebrafish
Gianluca D'Agati et al.
DEVELOPMENTAL BIOLOGY (2017)
The inflammatory chemokine Cxcl18b exerts neutrophil-specific chemotaxis via the promiscuous chemokine receptor Cxcr2 in zebrafish
Vincenzo Torraca et al.
DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2017)
EP4 Receptor-Associated Protein in Microglia Promotes Inflammation in the Brain
Risako Fujikawa et al.
AMERICAN JOURNAL OF PATHOLOGY (2016)
Infiltrated Macrophages Die of Pneumolysin-Mediated Necroptosis following Pneumococcal Myocardial Invasion
Ryan P. Gilley et al.
INFECTION AND IMMUNITY (2016)
Infection of zebrafish embryos with live fluorescent Streptococcus pneumoniae as a real-time pneumococcal meningitis model
Kin Ki Jim et al.
JOURNAL OF NEUROINFLAMMATION (2016)
Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions
Alexander J. Westermann et al.
NATURE (2016)
Identification of Novel Reference Genes Suitable for qRT-PCR Normalization with Respect to the Zebrafish Developmental Stage
Yu Hu et al.
PLOS ONE (2016)
An evolutionary perspective on the necroptotic pathway
Yves Dondelinger et al.
TRENDS IN CELL BIOLOGY (2016)
Necroptosis Promotes Staphylococcus aureus Clearance by Inhibiting Excessive Inflammatory Signaling
Kipyegon Kitur et al.
CELL REPORTS (2016)
Community-acquired bacterial meningitis
Diederik van de Beek et al.
NATURE REVIEWS DISEASE PRIMERS (2016)
Dual-seq transcriptomics reveals the battle for iron during Pseudomonas aeruginosa acute murine pneumonia
F. Heath Damron et al.
SCIENTIFIC REPORTS (2016)
Time-resolved dual RNA-seq reveals extensive rewiring of lung epithelial and pneumococcal transcriptomes during early infection
Rieza Aprianto et al.
GENOME BIOLOGY (2016)
Red Fluorescent Proteins for Gene Expression and Protein Localization Studies in Streptococcus pneumoniae and Efficient Transformation with DNA Assembled via the Gibson Assembly Method
Katrin Beilharz et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Simultaneous transcriptional profiling of Leishmania major and its murine lemacrophage host cell reveals insights into host-pathogen interactions
Laura A. L. Dillon et al.
BMC GENOMICS (2015)
Necroptosis and its role in inflammation
Manolis Pasparakis et al.
NATURE (2015)
Dual RNA-seq of Nontypeable Haemophilus influenzae and Host Cell Transcriptomes Reveals Novel Insights into Host-Pathogen Cross Talk
Buket Baddal et al.
MBIO (2015)
Pore-Forming Toxins Induce Macrophage Necroptosis during Acute Bacterial Pneumonia
Norberto Gonzalez-Juarbe et al.
PLOS PATHOGENS (2015)
Type I Interferon Induced Epigenetic Regulation of Macrophages Suppresses Innate and Adaptive Immunity in Acute Respiratory Viral Infection
Danielle N. Kroetz et al.
PLOS PATHOGENS (2015)
Toxin-Induced Necroptosis Is a Major Mechanism of Staphylococcus aureus Lung Damage
Kipyegon Kitur et al.
PLOS PATHOGENS (2015)
Bright Fluorescent Streptococcus pneumoniae for Live-Cell Imaging of Host-Pathogen Interactions
Morten Kjos et al.
JOURNAL OF BACTERIOLOGY (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Antibiotic-Induced Replication Stress Triggers Bacterial Competence by Increasing Gene Dosage near the Origin
Jelle Slager et al.
CELL (2014)
RIP3 Induces Apoptosis Independent of Pronecrotic Kinase Activity
Pratyusha Mandal et al.
MOLECULAR CELL (2014)
Tracking of chromosome dynamics in live Streptococcus pneumoniae reveals that transcription promotes chromosome segregation
Morten Kjos et al.
MOLECULAR MICROBIOLOGY (2014)
Bacterial transformation: distribution, shared mechanisms and divergent control
Calum Johnston et al.
NATURE REVIEWS MICROBIOLOGY (2014)
Necroptosis
Andreas Linkermann et al.
NEW ENGLAND JOURNAL OF MEDICINE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Semaphorin3E-Induced Inflammation Contributes to Insulin Resistance in Dietary Obesity
Ippei Shimizu et al.
CELL METABOLISM (2013)
Necroptosis: The Release of Damage-Associated Molecular Patterns and Its Physiological Relevance
Agnieszka Kaczmarek et al.
IMMUNITY (2013)
Quorum-Sensing Systems LuxS/Autoinducer 2 and Com Regulate Streptococcus pneumoniae Biofilms in a Bioreactor with Living Cultures of Human Respiratory Cells
Jorge E. Vidal et al.
INFECTION AND IMMUNITY (2013)
The Pneumococcus: Epidemiology, Microbiology, and Pathogenesis
Birgitta Henriques-Normark et al.
COLD SPRING HARBOR PERSPECTIVES IN MEDICINE (2013)
Persistence of Pneumolysin in the Cerebrospinal Fluid of Patients With Pneumococcal Meningitis Is Associated With Mortality
Emma C. Wall et al.
CLINICAL INFECTIOUS DISEASES (2012)
Bleach gel: A simple agarose gel for analyzing RNA quality
Patrick S. Aranda et al.
ELECTROPHORESIS (2012)
Streptococcus pneumoniae Stimulates a STING- and IFN Regulatory Factor 3-Dependent Type I IFN Production in Macrophages, which Regulates RANTES Production in Macrophages, Cocultured Alveolar Epithelial Cells, and Mouse Lungs
Uwe Koppe et al.
JOURNAL OF IMMUNOLOGY (2012)
Progress and challenges in bacterial meningitis
Diederik van de Beek
LANCET (2012)
NIH Image to ImageJ: 25 years of image analysis
Caroline A. Schneider et al.
NATURE METHODS (2012)
Bacterial Quorum Sensing: Its Role in Virulence and Possibilities for Its Control
Steven T. Rutherford et al.
COLD SPRING HARBOR PERSPECTIVES IN MEDICINE (2012)
An interspecies regulatory network inferred from simultaneous RNA-seq of Candida albicans invading innate immune cells
Lanay Tiemey et al.
FRONTIERS IN MICROBIOLOGY (2012)
Pathogenesis and Pathophysiology of Pneumococcal Meningitis
Barry B. Mook-Kanamori et al.
CLINICAL MICROBIOLOGY REVIEWS (2011)
COMPETENCE INCREASES SURVIVAL DURING STRESS IN STREPTOCOCCUS PNEUMONIAE
Daniel J. P. Engelmoer et al.
EVOLUTION (2011)
The NLRP3 Inflammasome Is Differentially Activated by Pneumolysin Variants and Contributes to Host Defense in Pneumococcal Pneumonia
Martin Witzenrath et al.
JOURNAL OF IMMUNOLOGY (2011)
Pattern Recognition Receptors and Inflammation
Osamu Takeuchi et al.
CELL (2010)
Expression and maintenance of ComD-ComE, the two-component signal-transduction system that controls competence of Streptococcus pneumoniae
Bernard Martin et al.
MOLECULAR MICROBIOLOGY (2010)
Molecular mechanisms of necroptosis: an ordered cellular explosion
Peter Vandenabeele et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)
Clinical Features and Outcome of Patients With IRAK-4 and MyD88 Deficiency
Capucine Picard et al.
MEDICINE (2010)
Pneumolysin Activates the NLRP3 Inflammasome and Promotes Proinflammatory Cytokines Independently of TLR4
Edel A. McNeela et al.
PLOS PATHOGENS (2010)
AmiGO: online access to ontology and annotation data
Seth Carbon et al.
BIOINFORMATICS (2009)
Evolution of Lipopolysaccharide (LPS) Recognition and Signaling: Fish TLR4 Does Not Recognize LPS and Negatively Regulates NF-κB Activation
Maria P. Sepulcre et al.
JOURNAL OF IMMUNOLOGY (2009)
The Gene History of Zebrafish tlr4a and tlr4b Is Predictive of Their Divergent Functions
Con Sullivan et al.
JOURNAL OF IMMUNOLOGY (2009)
Transparent adult zebrafish as a tool for in vivo transplantation analysis
Richard Mark White et al.
CELL STEM CELL (2008)
Prostaglandin e receptor type 4-associated protein interacts directly with NF-κB1 and attenuates macrophage activation
Manabu Minami et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Streptococcus pneumoniae deficient in pneumolysin or autolysin has reduced virulence in meningitis
Robert A. Hirst et al.
JOURNAL OF INFECTIOUS DISEASES (2008)
Identification of RIP1 kinase as a specific cellular target of necrostatins
Alexei Degterev et al.
NATURE CHEMICAL BIOLOGY (2008)
The role of Streptococcus pneumoniae virulence factors in host respiratory colonization and disease
Aras Kadioglu et al.
NATURE REVIEWS MICROBIOLOGY (2008)
PspA and PspC minimize immune adherence and transfer of pneumococci from erythrocytes to macrophages through their effects on complement activation
Jie Li et al.
INFECTION AND IMMUNITY (2007)
Selective predisposition to bacterial infections in IRAK-4-deficient children:: IRAK-4-dependent TLRs are otherwise redundant in protective immunity
Cheng-Lung Ku et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2007)
Mfuzz: A software package for soft clustering of microarray data
Lokesh Kumar et al.
BIOINFORMATION (2007)
Cannibalism and fratricide: mechanisms and raisons d'etre
Jean-Pierre Claverys et al.
NATURE REVIEWS MICROBIOLOGY (2007)
A transgenic zebrafish model of neutrophilic inflammation
Stephen A. Renshaw et al.
BLOOD (2006)
Antibiotic stress induces genetic transformability in the human pathogen Streptococcus pneumoniae
Marc Prudhomme et al.
SCIENCE (2006)
A novel prostaglandin E receptor 4-associated protein participates in antiinflammatory signaling
K Takayama et al.
CIRCULATION RESEARCH (2006)
Bacterial small-molecule signaling pathways
A Camilli et al.
SCIENCE (2006)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Quorum sensing in streptococcal biofilm formation
P Suntharalingam et al.
TRENDS IN MICROBIOLOGY (2005)
Quorum sensing and biofilm formation in Streptococcal infections
DG Cvitkovitch et al.
JOURNAL OF CLINICAL INVESTIGATION (2003)
Recognition of pneumolysin by toll-like receptor 4 confers resistance to pneumococcal infection
R Malley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Decreased virulence of a pneumolysin-deficient strain of Streptococcus pneumoniae in murine meningitis
A Wellmer et al.
INFECTION AND IMMUNITY (2002)
Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
KJ Livak et al.
METHODS (2001)
Generating transparent zebrafish: A refined method to improve detection of gene expression during embryonic development
J Karlsson et al.
MARINE BIOTECHNOLOGY (2001)
Extracellular matrix moieties, cytokines, and enzymes: dynamic effects on immune cell behavior and inflammation
GG Vaday et al.
JOURNAL OF LEUKOCYTE BIOLOGY (2000)