Related references
Note: Only part of the references are listed.Cocaine regulation of Nr4a1 chromatin bivalency and mRNA in male and female mice
Delaney K. Fischer et al.
SCIENTIFIC REPORTS (2022)
Decoding molecular and cellular heterogeneity of mouse nucleus accumbens
Renchao Chen et al.
NATURE NEUROSCIENCE (2021)
Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain
Matthew N. Tran et al.
NEURON (2021)
Joint profiling of histone modifications and transcriptome in single cells from mouse brain
Chenxu Zhu et al.
NATURE METHODS (2021)
INTACT vs. FANS for Cell-Type-Specific Nuclei Sorting: A Comprehensive Qualitative and Quantitative Comparison
Monika Chanu Chongtham et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)
Transcription factor chromatin profiling genome-wide using uliCUT&RUN in single cells and individual blastocysts
Benjamin J. Patty et al.
NATURE PROTOCOLS (2021)
CHIPIN: ChIP-seq inter-sample normalization based on signal invariance across transcriptionally constant genes
Lelia Polit et al.
BMC BIOINFORMATICS (2021)
Addiction-Associated Genetic Variants Implicate Brain Cell Type- and Region-Specific Cis-Regulatory Elements in Addiction Neurobiology
Chaitanya Srinivasan et al.
JOURNAL OF NEUROSCIENCE (2021)
Rewiring of Lactate-Interleukin-1β Autoregulatory Loop with Clock-Bmal1: a Feed-Forward Circuit in Glioma
Pruthvi Gowda et al.
MOLECULAR AND CELLULAR BIOLOGY (2021)
Chromatin-mediated alternative splicing regulates cocaine-reward behavior
Song-Jun Xu et al.
NEURON (2021)
Nucleus accumbens medium spiny neurons subtypes signal both reward and aversion
Carina Soares-Cunha et al.
MOLECULAR PSYCHIATRY (2020)
Nr4a1 suppresses cocaine-induced behavior via epigenetic regulation of homeostatic target genes
Marco D. Carpenter et al.
NATURE COMMUNICATIONS (2020)
Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression
Damien Kaukonen et al.
BMC MEDICAL GENOMICS (2020)
A dopamine-induced gene expression signature regulates neuronal function and cocaine response
Katherine E. Savell et al.
SCIENCE ADVANCES (2020)
Cell Type-Specific Oxidative Stress Genomic Signatures in the Globus Pallidus of Dopamine-Depleted Mice
Alyssa J. Lawler et al.
JOURNAL OF NEUROSCIENCE (2020)
A novel antiviral lncRNA, EDAL, shields a T309O-GlcNAcylation site to promote EZH2 lysosomal degradation
Baokun Sui et al.
GENOME BIOLOGY (2020)
A Motivational and Neuropeptidergic Hub: Anatomical and Functional Diversity within the Nucleus Accumbens Shell
Daniel C. Castro et al.
NEURON (2019)
Biology and Bias in Cell Type-Specific RNAseq of Nucleus Accumbens Medium Spiny Neurons
Hope Kronman et al.
SCIENTIFIC REPORTS (2019)
Brain cell type-specific enhancer-promoter interactome maps and disease-risk association
Alexi Nott et al.
SCIENCE (2019)
Flow Cytometry Has a Significant Impact on the Cellular Metabolome
Aleksandra Binek et al.
JOURNAL OF PROTEOME RESEARCH (2019)
Moving beyond neurons: the role of cell type-specific gene regulation in Parkinson's disease heritability
Regina H. Reynolds et al.
NPJ PARKINSONS DISEASE (2019)
Cell type-specific epigenetic links to schizophrenia risk in the brain
Isabel Mendizabal et al.
GENOME BIOLOGY (2019)
Cocaine Self-administration Alters Transcriptome-wide Responses in the Brain's Reward Circuitry
Deena M. Walker et al.
BIOLOGICAL PSYCHIATRY (2018)
Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch
Nan Liu et al.
CELL (2018)
Targeted in situ genome-wide profiling with high efficiency for low cell numbers
Peter J. Skene et al.
NATURE PROTOCOLS (2018)
Detecting Activated Cell Populations Using Single-Cell RNA-Seq
Ye Emily Wu et al.
NEURON (2017)
Gene bivalency at Polycomb domains regulates cranial neural crest positional identity
Maryline Minoux et al.
SCIENCE (2017)
Locus-specific histone deacetylation using a synthetic CRISPR-Cas9-based HDAC
Deborah Y. Kwon et al.
NATURE COMMUNICATIONS (2017)
Dynamics of RNA Polymerase II Pausing and Bivalent Histone H3 Methylation during Neuronal Differentiation in Brain Development
Jiancheng Liu et al.
CELL REPORTS (2017)
Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos
Shai R. Joseph et al.
ELIFE (2017)
An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites
Peter J. Skene et al.
ELIFE (2017)
UpSetR: an R package for the visualization of intersecting sets and their properties
Jake R. Conway et al.
BIOINFORMATICS (2017)
ChIP bias as a function of cross-linking time
Laura Baranello et al.
CHROMOSOME RESEARCH (2016)
Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos
Xiaoyu Liu et al.
NATURE (2016)
deepTools2: a next generation web server for deep-sequencing data analysis
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2016)
In vivo imaging identifies temporal signature of D1 and D2 medium spiny neurons in cocaine reward
Erin S. Calipari et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq
Michele Busby et al.
EPIGENETICS & CHROMATIN (2016)
Nuclear RNA-seq of single neurons reveals molecular signatures of activation
Benjamin Lacar et al.
NATURE COMMUNICATIONS (2016)
Opposing Role for Egr3 in Nucleus Accumbens Cell Subtypes in Cocaine Action
Ramesh Chandra et al.
JOURNAL OF NEUROSCIENCE (2015)
Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain
Alisa Mo et al.
NEURON (2015)
Analytical tools and current challenges in the modern era of neuroepigenomics
Ian Maze et al.
NATURE NEUROSCIENCE (2014)
Non-random DNA fragmentation in next-generation sequencing
Maria S. Poptsova et al.
SCIENTIFIC REPORTS (2014)
Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens
Jian Feng et al.
GENOME BIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Cocaine-induced adaptations in D1 and D2 accumbens projection neurons (a dichotomy not necessarily synonymous with direct and indirect pathways)
Rachel J. Smith et al.
CURRENT OPINION IN NEUROBIOLOGY (2013)
A double take on bivalent promoters
Philipp Voigt et al.
GENES & DEVELOPMENT (2013)
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Stephen G. Landt et al.
GENOME RESEARCH (2012)
Drug Experience Epigenetically Primes Fosb Gene Inducibility in Rat Nucleus Accumbens
Diane Damez-Werno et al.
JOURNAL OF NEUROSCIENCE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Widespread transcription at neuronal activity-regulated enhancers
Tae-Kyung Kim et al.
NATURE (2010)
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
Chongzhi Zang et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Computer Simulations of the energy dissipation rate in a fluorescence-activated cell sorter: Implications to cells
Mike Mollet et al.
BIOTECHNOLOGY AND BIOENGINEERING (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Polycomb complexes repress developmental regulators in murine embryonic stem cells
LA Boyer et al.
NATURE (2006)
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
BE Bernstein et al.
CELL (2006)
FACS-array profiling of striatal projection neuron subtypes in juvenile and adult mouse brains
MK Lobo et al.
NATURE NEUROSCIENCE (2006)
Cocaine-induced CREB phosphorylation in nucleus accumbens of cocaine-sensitized rats is enabled by enhanced activation of extracellular signal-related kinase, but not protein kinase A
BJ Mattson et al.
JOURNAL OF NEUROCHEMISTRY (2005)
Share Paper
