Related references
Note: Only part of the references are listed.The renal cancer risk allele at 14q24.2 activates a novel hypoxia-inducible transcription factor-binding enhancer of DPF3 expression
Johanna Protze et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2022)
Genetic determinants of chromatin reveal prostate cancer risk mediated by context-dependent gene regulation
Sylvan C. Baca et al.
NATURE GENETICS (2022)
Inhibition of hypoxia-inducible factor-2α in renal cell carcinoma with belzutifan: a phase 1 trial and biomarker analysis
Toni K. Choueiri et al.
NATURE MEDICINE (2021)
Altered regulation of DPF3, a member of the SWI/SNF complexes, underlies the 14q24 renal cancer susceptibility locus
Leandro M. Colli et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2021)
Allele-Specific QTL Fine Mapping with PLASMA
Austin T. Wang et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2020)
Interplay of somatic alterations and immune infiltration modulates response to PD-1 blockade in advanced clear cell renal cell carcinoma
David A. Braun et al.
NATURE MEDICINE (2020)
Targeting the HIF2-VEGF axis in renal cell carcinoma
Toni K. Choueiri et al.
NATURE MEDICINE (2020)
Integrated epigenomic profiling reveals endogenous retrovirus reactivation in renal cell carcinoma
Kyle T. Siebenthall et al.
EBIOMEDICINE (2019)
Allele-specific NKX2-5 binding underlies multiple genetic associations with human electrocardiographic traits
Paola Benaglio et al.
NATURE GENETICS (2019)
PAX8 activates metabolic genes via enhancer elements in Renal Cell Carcinoma
Melusine Bleu et al.
NATURE COMMUNICATIONS (2019)
Trans-ethnic association study of blood pressure determinants in over 750,000 individuals
Ayush Giri et al.
NATURE GENETICS (2019)
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
MacIntosh Cornwell et al.
BMC BIOINFORMATICS (2018)
Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function
Verena M. Link et al.
CELL (2018)
The Human Transcription Factors
Samuel A. Lambert et al.
CELL (2018)
Transcriptome-wide association study of schizophrenia and chromatin activity yields mechanistic disease insights
Alexander Gusev et al.
NATURE GENETICS (2018)
Genetic determinants of co-accessible chromatin regions in activated T cells across humans
Rachel E. Gate et al.
NATURE GENETICS (2018)
The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma (vol 23, pg 313, 2018)
Christopher J. Ricketts et al.
CELL REPORTS (2018)
The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma
Christopher J. Ricketts et al.
CELL REPORTS (2018)
Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk
Yakir A. Reshef et al.
NATURE GENETICS (2018)
Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes
Angli Xue et al.
NATURE COMMUNICATIONS (2018)
Enhancer Architecture and Essential Core Regulatory Circuitry of Chronic Lymphocytic Leukemia
Christopher J. Ott et al.
CANCER CELL (2018)
The UK Biobank resource with deep phenotyping and genomic data
Clare Bycroft et al.
NATURE (2018)
The chromatin accessibility landscape of primary human cancers
M. Ryan Corces et al.
SCIENCE (2018)
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
M. Ryan Corces et al.
NATURE METHODS (2017)
GEPIA: a web server for cancer and normal gene expression profiling and interactive analyses
Zefang Tang et al.
NUCLEIC ACIDS RESEARCH (2017)
Analysis of renal cancer cell lines from two major resources enables genomics-guided cell line selection
Rileen Sinha et al.
NATURE COMMUNICATIONS (2017)
Genome-wide association study identifies multiple risk loci for renal cell carcinoma
Ghislaine Scelo et al.
NATURE COMMUNICATIONS (2017)
Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants
Lam C. Tsoi et al.
NATURE COMMUNICATIONS (2017)
VHL Deficiency Drives Enhancer Activation of Oncogenes in Clear Cell Renal Cell Carcinoma
Xiaosai Yao et al.
CANCER DISCOVERY (2017)
Cell-Type-Specific Gene Programs of the Normal Human Nephron Define Kidney Cancer Subtypes
David Lindgren et al.
CELL REPORTS (2017)
Regulation of H3K4me3 at Transcriptional Enhancers Characterizes Acquisition of Virus-Specific CD8+ T Cell-Lineage-Specific Function
Brendan E. Russ et al.
CELL REPORTS (2017)
Transcription factor TFCP2L1 patterns cells in the mouse kidney collecting ducts
Max Werth et al.
ELIFE (2017)
Renal cell carcinoma
James J. Hsieh et al.
NATURE REVIEWS DISEASE PRIMERS (2017)
annotatr: genomic regions in context
Raymond G. Cavalcante et al.
BIOINFORMATICS (2017)
An Expanded View of Complex Traits: From Polygenic to Omnigenic
Evan A. Boyle et al.
CELL (2017)
Fine-mapping cellular QTLs with RASQUAL and ATAC-seq
Natsuhiko Kumasaka et al.
NATURE GENETICS (2016)
Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells
Lu Chen et al.
CELL (2016)
Models of human core transcriptional regulatory circuitries
Violaine Saint-Andre et al.
GENOME RESEARCH (2016)
Choosing the right cell line for renal cell cancer research
Klaudia K. Brodaczewska et al.
MOLECULAR CANCER (2016)
Active medulloblastoma enhancers reveal subgroup-specific cellular origins
Charles Y. Lin et al.
NATURE (2016)
Analysis of protein-coding genetic variation in 60,706 humans
Monkol Lek et al.
NATURE (2016)
Rapid genotype imputation from sequence without reference panels
Robert W. Davies et al.
NATURE GENETICS (2016)
A reference panel of 64,976 haplotypes for genotype imputation
Shane McCarthy et al.
NATURE GENETICS (2016)
Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma
W. Marston Linehan et al.
NEW ENGLAND JOURNAL OF MEDICINE (2016)
Genetic variation at the 8q24.21 renal cancer susceptibility locus affects HIF binding to a MYC enhancer
Steffen Grampp et al.
NATURE COMMUNICATIONS (2016)
Functional characterization of the 12p12.1 renal cancer-susceptibility locus implicates BHLHE41
Pierre Bigot et al.
NATURE COMMUNICATIONS (2016)
Multilevel Genomics-Based Taxonomy of Renal Cell Carcinoma
Fengju Chen et al.
CELL REPORTS (2016)
Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions
Fabian Grubert et al.
CELL (2015)
Population Variation and Genetic Control of Modular Chromatin Architecture in Humans
Sebastian M. Waszak et al.
CELL (2015)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
The androgen receptor cistrome is extensively reprogrammed in human prostate tumorigenesis
Mark M. Pomerantz et al.
NATURE GENETICS (2015)
Partitioning heritability by functional annotation using genome-wide association summary statistics
Hilary K. Finucane et al.
NATURE GENETICS (2015)
WASP: allele-specific software for robust molecular quantitative trait locus discovery
Bryce van de Geijn et al.
NATURE METHODS (2015)
The selection and function of cell type-specific enhancers
Sven Heinz et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)
A Systematic Approach to Identify Candidate Transcription Factors that Control Cell Identity
Ana C. D'Alessio et al.
STEM CELL REPORTS (2015)
Partitioning Heritability of Regulatory and Cell-Type-Specific Variants across 11 Common Diseases
Alexander Gusev et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2014)
The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma
Caleb F. Davis et al.
CANCER CELL (2014)
deepTools: a flexible platform for exploring deep-sequencing data
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2014)
Renal cell carcinoma
Eric Jonasch et al.
BMJ-BRITISH MEDICAL JOURNAL (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Mapping of Immune-Mediated Disease Genes
Isis Ricano-Ponce et al.
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 14 (2013)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Discovery and Characterization of Super-Enhancer-Associated Dependencies in Diffuse Large B Cell Lymphoma
Bjoern Chapuy et al.
CANCER CELL (2013)
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte et al.
CELL (2013)
Super-Enhancers in the Control of Cell Identity and Disease
Denes Hnisz et al.
CELL (2013)
A blueprint for engineering cell fate: current technologies to reprogram cell identity
Samantha A. Morris et al.
CELL RESEARCH (2013)
HNF1B controls proximal-intermediate nephron segment identity in vertebrates by regulating Notch signalling components and Irx1/2
Claire Heliot et al.
DEVELOPMENT (2013)
Modification of Enhancer Chromatin: What, How, and Why?
Eliezer Calo et al.
MOLECULAR CELL (2013)
Comprehensivemolecular characterization of clear cell renal cell carcinoma
Chad J. Creighton et al.
NATURE (2013)
Integrated molecular analysis of clear-cell renal cell carcinoma
Yusuke Sato et al.
NATURE GENETICS (2013)
Mechanisms and models of somatic cell reprogramming
Yosef Buganim et al.
NATURE REVIEWS GENETICS (2013)
Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
Stephen C. J. Parker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
Jianjiong Gao et al.
SCIENCE SIGNALING (2013)
The VHL/HIF axis in clear cell renal carcinoma
Chuan Shen et al.
SEMINARS IN CANCER BIOLOGY (2013)
Snakemake-a scalable bioinformatics workflow engine
Johannes Koester et al.
BIOINFORMATICS (2012)
Circuitry and Dynamics of Human Transcription Factor Regulatory Networks
Shane Neph et al.
CELL (2012)
SHARP1 suppresses breast cancer metastasis by promoting degradation of hypoxia-inducible factors
Marco Montagner et al.
NATURE (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Lineage conversion methodologies meet the reprogramming toolbox
Ignacio Sancho-Martinez et al.
NATURE CELL BIOLOGY (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
New meta-analysis tools reveal common transcriptional regulatory basis for multiple determinants of behavior
Seth A. Ament et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
Matthew T. Maurano et al.
SCIENCE (2012)
The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data
Ethan Cerami et al.
CANCER DISCOVERY (2012)
Genomic profiling of papillary renal cell tumours identifies small regions of DNA alterations: a possible role of HNF1B in tumour development
Adrianna Szponar et al.
HISTOPATHOLOGY (2011)
Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma
Ignacio Varela et al.
NATURE (2011)
Integrative genomics viewer
James T. Robinson et al.
NATURE BIOTECHNOLOGY (2011)
Principles for the post-GWAS functional characterization of cancer risk loci
Matthew L. Freedman et al.
NATURE GENETICS (2011)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes
Gillian L. Dalgliesh et al.
NATURE (2010)
GREAT improves functional interpretation of cis-regulatory regions
Cory Y. McLean et al.
NATURE BIOTECHNOLOGY (2010)
A method and server for predicting damaging missense mutations
Ivan A. Adzhubei et al.
NATURE METHODS (2010)
Expression of PAX8 in normal and neoplastic renal tissues: an immunohistochemical study
Guo-Xia Tong et al.
MODERN PATHOLOGY (2009)
ChIP-seq accurately predicts tissue-specific activity of enhancers
Axel Visel et al.
NATURE (2009)
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
Prateek Kumar et al.
NATURE PROTOCOLS (2009)
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
Lucia A. Hindorff et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
The Transcription Factor ETS-1: Its Role in Tumour Development and Strategies for its Inhibition
Jens Claus Hahne et al.
MINI-REVIEWS IN MEDICINAL CHEMISTRY (2008)
An efficient and versatile system for acute and chronic modulation of renal tubular function in transgenic mice
Milena Traykova-Brauch et al.
NATURE MEDICINE (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants
Melanie Newport et al.
NATURE GENETICS (2007)
Renal-cell carcinoma
HT Cohen et al.
NEW ENGLAND JOURNAL OF MEDICINE (2005)
Core transcriptional regulatory circuitry in human embryonic stem cells
LA Boyer et al.
CELL (2005)
Tumor suppressor p53 inhibits transcriptional activation of invasion gene thromboxane synthase mediated by the proto-oncogenic factor ets-1
E Kim et al.
ONCOGENE (2003)
Cooperative interaction of hypoxia-inducible factor-2α (HIF-2α) and Ets-1 in the transcriptional activation of vascular endothelial growth factor receptor-2 (Flk-1)
G Elvert et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Expression of the transcription factor Ets-1 is an independent prognostic marker for relapse-free survival in breast cancer
PN Span et al.
ONCOGENE (2002)
Cytokeratin 7: a useful adjunct in the diagnosis of chromophobe renal cell carcinoma
ME Mathers et al.
HISTOPATHOLOGY (2002)
Share Paper
