Related references
Note: Only part of the references are listed.Dissecting OCT4 defines the role of nucleosome binding in pluripotency
Gareth A. Roberts et al.
NATURE CELL BIOLOGY (2021)
U1 snRNP regulates cancer cell migration and invasion in vitro
Jung-Min Oh et al.
NATURE COMMUNICATIONS (2020)
N-Terminal Amino Acids Determine KLF4 Protein Stability in 2A Peptide-Linked Polycistronic Reprogramming Constructs
Anika Reinhardt et al.
STEM CELL REPORTS (2020)
Specific subfamilies of transposable elements contribute to different domains of T lymphocyte enhancers
Mengliang Ye et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Genomic Repeats Categorize Genes with Distinct Functions for Orchestrated Regulation
J. Yuyang Lu et al.
CELL REPORTS (2020)
KRAB-zinc finger protein gene expansion in response to active retrotransposons in the murine lineage
Gernot Wolf et al.
ELIFE (2020)
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
Yang Liao et al.
NUCLEIC ACIDS RESEARCH (2019)
Direct Induction of the Three Pre-implantation Blastocyst Cell Types from Fibroblasts
Hana Benchetrit et al.
CELL STEM CELL (2019)
Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs
Julien Pontis et al.
CELL STEM CELL (2019)
A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity
Michelle Percharde et al.
CELL (2018)
Mapping transcription factor occupancy using minimal numbers of cells in vitro and in vivo
Luca Tosti et al.
GENOME RESEARCH (2018)
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
M. Ryan Corces et al.
NATURE METHODS (2017)
CRISPR-UMI : single-cell lineage tracing of pooled CRISPR-Cas9 screens
Georg Michlits et al.
NATURE METHODS (2017)
The Role of KRAB-ZFPs in Transposable Element Repression and Mammalian Evolution
Peng Yang et al.
TRENDS IN GENETICS (2017)
Constitutively Active SMAD2/3 Are Broad-Scope Potentiators of Transcription-Factor- Mediated Cellular Reprogramming
Tyson Ruetz et al.
CELL STEM CELL (2017)
Cooperative Binding of Transcription Factors Orchestrates Reprogramming
Constantinos Chronis et al.
CELL (2017)
Transposable Elements and Their KRAB-ZFP Controllers Regulate Gene Expression in Adult Tissues
Gabriela Ecco et al.
DEVELOPMENTAL CELL (2016)
deepTools2: a next generation web server for deep-sequencing data analysis
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2016)
A CRISPR Dropout Screen Identifies Genetic Vulnerabilities and Therapeutic Targets in Acute Myeloid Leukemia
Konstantinos Tzelepis et al.
CELL REPORTS (2016)
Inhibition of Pluripotency Networks by the Rb Tumor Suppressor Restricts Reprogramming and Tumorigenesis
Michael S. Kareta et al.
CELL STEM CELL (2015)
The oncogene c-Jun impedes somatic cell reprogramming
Jing Liu et al.
NATURE CELL BIOLOGY (2015)
limma powers differential expression analyses for RNA-sequencing and microarray studies
Matthew E. Ritchie et al.
NUCLEIC ACIDS RESEARCH (2015)
The MEME Suite
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2015)
Reprogramming Roadblocks Are System Dependent
Eleni Chantzoura et al.
STEM CELL REPORTS (2015)
KLF4 N-Terminal Variance Modulates Induced Reprogramming to Pluripotency
Shin-Il Kim et al.
STEM CELL REPORTS (2015)
Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library
Hiroko Koike-Yusa et al.
NATURE BIOTECHNOLOGY (2014)
Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential
Mari Ohnuki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Genome-wide Functional Analysis Reveals Factors Needed at the Transition Steps of Induced Reprogramming
Chao-Shun Yang et al.
CELL REPORTS (2014)
MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens
Wei Li et al.
GENOME BIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Facilitators and Impediments of the Pluripotency Reprogramming Factors' Initial Engagement with the Genome
Abdenour Soufi et al.
CELL (2012)
Chromatin-modifying enzymes as modulators of reprogramming
Tamer T. Onder et al.
NATURE (2012)
The H3K27 demethylase Utx regulates somatic and germ cell epigenetic reprogramming
Abed AlFatah Mansour et al.
NATURE (2012)
Genome-wide nucleosome positioning during embryonic stem cell development
Vladimir B. Teif et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Integrative genomics viewer
James T. Robinson et al.
NATURE BIOTECHNOLOGY (2011)
A hyperactive piggyBac transposase for mammalian applications
Kosuke Yusa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Gene ontology analysis for RNA-seq: accounting for selection bias
Matthew D. Young et al.
GENOME BIOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Senescence impairs successful reprogramming to pluripotent stem cells
Ana Banito et al.
GENES & DEVELOPMENT (2009)
Epigenetic Gene Silencing by the SRY Protein Is Mediated by a KRAB-O Protein That Recruits the KAP1 Co-repressor Machinery
Hongzhuang Peng et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Linking the p53 tumour suppressor pathway to somatic cell reprogramming
Teruhisa Kawamura et al.
NATURE (2009)
Virus-free induction of pluripotency and subsequent excision of reprogramming factors
Keisuke Kaji et al.
NATURE (2009)
piggyBac transposition reprograms fibroblasts to induced pluripotent stem cells
Knut Woltjen et al.
NATURE (2009)
A p53-mediated DNA damage response limits reprogramming to ensure iPS cell genomic integrity
Rosa M. Marion et al.
NATURE (2009)
Suppression of induced pluripotent stem cell generation by the p53-p21 pathway
Hyenjong Hong et al.
NATURE (2009)
Immortalization eliminates a roadblock during cellular reprogramming into iPS cells
Jochen Utikal et al.
NATURE (2009)
The Ink4/Arf locus is a barrier for iPS cell reprogramming
Han Li et al.
NATURE (2009)
Induced Pluripotent Stem Cell Generation Using a Single Lentiviral Stem Cell Cassette
Cesar A. Sommer et al.
STEM CELLS (2009)
Two Supporting Factors Greatly Improve the Efficiency of Human iPSC Generation
Yang Zhao et al.
CELL STEM CELL (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Detection of in vivo protein-DNA interactions using DamID in mammalian cells
Maartje J. Vogel et al.
NATURE PROTOCOLS (2007)
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
Kazutoshi Takahashi et al.
CELL (2006)
The UCSC Genome Browser Database: update 2006
A. S. Hinrichs et al.
NUCLEIC ACIDS RESEARCH (2006)
Share Paper
