Related references
Note: Only part of the references are listed.Subcellular Transcriptomics and Proteomics: A Comparative Methods Review
Josie A. Christopher et al.
MOLECULAR & CELLULAR PROTEOMICS (2022)
Analysis of subcellular transcriptomes by RNA proximity labeling with Halo-seq
Krysta L. Engel et al.
NUCLEIC ACIDS RESEARCH (2022)
Regulation and outcomes of localized RNA translation
Alexander N. Gasparski et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2022)
Revisiting Extracellular RNA Release, Processing, and Function
Juan Pablo Tosar et al.
TRENDS IN BIOCHEMICAL SCIENCES (2021)
High-resolution quantitative profiling of tRNA abundance and modification status in eukaryotes by mim-tRNAseq
Andrew Behrens et al.
MOLECULAR CELL (2021)
Examining the evidence for extracellular RNA function in mammals
Hannah N. Gruner et al.
NATURE REVIEWS GENETICS (2021)
mRNA Targeting, Transport and Local Translation in Eukaryotic Cells: From the Classical View to a Diversity of New Concepts
Kseniya A. Lashkevich et al.
MOLECULAR BIOLOGY (2021)
Structure of human cytomegalovirus virion reveals host tRNA binding to capsid-associated tegument protein pp150
Yun-Tao Liu et al.
NATURE COMMUNICATIONS (2021)
MitoCarta3.0: an updated mitochondrial proteome now with sub-organelle localization and pathway annotations
Sneha Rath et al.
NUCLEIC ACIDS RESEARCH (2021)
Bacterial RNA in extracellular vesicles: A new regulator of host-pathogen interactions?
Anne-Laure Lecrivain et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2020)
Mechanisms and consequences of subcellular RNA localization across diverse cell types
Krysta L. Engel et al.
TRAFFIC (2020)
YBEY is an essential biogenesis factor for mitochondrial ribosomes
Sabrina Summer et al.
NUCLEIC ACIDS RESEARCH (2020)
Noncoding Y RNAs regulate the levels, subcellular distribution and protein interactions of their Ro60 autoantigen partner
Yuanyuan Leng et al.
NUCLEIC ACIDS RESEARCH (2020)
Processing by RNase 1 forms tRNA halves and distinct Y RNA fragments in the extracellular environment
Gal Nechooshtan et al.
NUCLEIC ACIDS RESEARCH (2020)
Fragmentation of extracellular ribosomes and tRNAs shapes the extracellular RNAome
Juan Pablo Tosar et al.
NUCLEIC ACIDS RESEARCH (2020)
Structural insight into precursor ribosomal RNA processing by ribonuclease MRP
Pengfei Lan et al.
SCIENCE (2020)
Records of RNA locations in living yeast revealed through covalent marks
Hugo C. Medina-Munoz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Y-RNA subtype ratios in plasma extracellular vesicles are cell type-specific and are candidate biomarkers for inflammatory diseases
Tom A. P. Driedonks et al.
JOURNAL OF EXTRACELLULAR VESICLES (2020)
Endoribonucleolytic Cleavage of m6A-Containing RNAs by RNase P/MRP Complex
Ok Hyun Park et al.
MOLECULAR CELL (2019)
Matching tRNA modifications in humans to their known and predicted enzymes
Valerie de Crecy-Lagard et al.
NUCLEIC ACIDS RESEARCH (2019)
Mernorane-Associatec RNA-Bincinc Proteins Orchestrate Orcanelle-Coupled Translation
Julien Bethune et al.
TRENDS IN CELL BIOLOGY (2019)
Import of Non-Coding RNAs into Human Mitochondria: A Critical Review and Emerging Approaches
Damien Jeandard et al.
CELLS (2019)
exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids
Oscar D. Murillo et al.
CELL (2019)
Reassessment of Exosome Composition
Dennis K. Jeppesen et al.
CELL (2019)
Small RNA Sequencing across Diverse Biofluids Identifies Optimal Methods for exRNA Isolation
Srimeenakshi Srinivasan et al.
CELL (2019)
Ro60 and Y RNAs: structure, functions, and roles in autoimmunity
Marco Boccitto et al.
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2019)
Expanding APEX2 Substrates for Proximity-Dependent Labeling of Nucleic Acids and Proteins in Living Cells
Ying Zhou et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2019)
Atlas of Subcellular RNA Localization Revealed by APEX-Seq
Furqan M. Fazal et al.
CELL (2019)
Proximity RNA Labeling by APEX-Seq Reveals the Organization of Translation Initiation Complexes and Repressive RNA Granules
Alejandro Padron et al.
MOLECULAR CELL (2019)
Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression
Chenglong Xia et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Mapping spatial transcriptome with light-activated proximity-dependent RNA labeling
Pengchong Wang et al.
NATURE CHEMICAL BIOLOGY (2019)
Biochemical Methods To Image and Analyze RNA Localization: From One to Many
Ying Li et al.
BIOCHEMISTRY (2019)
PIWI-interacting RNAs: small RNAs with big functions
Deniz M. Ozata et al.
NATURE REVIEWS GENETICS (2019)
tRNA dynamics between the nucleus, cytoplasm and mitochondrial surface: Location, location, location
Kunal Chatterjee et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2018)
Dynamics and Spatial Genomics of the Nascent Transcriptome by Intron seqFISH
Sheel Shah et al.
CELL (2018)
Dimerization confers increased stability to nucleases in 5′ halves from glycine and glutamic acid tRNAs
Juan Pablo Tosar et al.
NUCLEIC ACIDS RESEARCH (2018)
Nuclear export of RNA: Different sizes, shapes and functions
Tobias Williams et al.
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2018)
Mitochondrial Genome Engineering: The Revolution May Not Be CRISPR-Ized
Payam A. Gammage et al.
TRENDS IN GENETICS (2018)
Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells
Alexis Autour et al.
NATURE COMMUNICATIONS (2018)
Biological functions, regulatory mechanisms, and disease relevance of RNA localization pathways
Samantha Bovaird et al.
FEBS LETTERS (2018)
Can Mitochondrial DNA be CRISPRized: Pro and Contra
Romuald Loutre et al.
IUBMB LIFE (2018)
Cryo-EM Structure of the Human Ribonuclease P Holoenzyme
Jian Wu et al.
CELL (2018)
Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments
Daniel Benhalevy et al.
NATURE METHODS (2018)
Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines
Clotilde Thery et al.
JOURNAL OF EXTRACELLULAR VESICLES (2018)
The functional RNA cargo of bacterial membrane vesicles
Priscila Dauros-Singorenko et al.
FEMS MICROBIOLOGY LETTERS (2018)
Bacterial Y RNAs: Gates, Tethers, and tRNA Mimics
Soyeong Sim et al.
MICROBIOLOGY SPECTRUM (2018)
Assembly and trafficking of box C/D and H/ACA snoRNPs
Severine Massenet et al.
RNA BIOLOGY (2017)
Targeted CRISPR disruption reveals a role for RNase MRP RNA in human preribosomal RNA processing
Katherine C. Goldfarbi et al.
GENES & DEVELOPMENT (2017)
Evidence of nuclei-encoded spliceosome mediating splicing of mitochondrial RNA
Roberto H. Herai et al.
HUMAN MOLECULAR GENETICS (2017)
Determination of tRNA aminoacylation levels by high-throughput sequencing
Molly E. Evans et al.
NUCLEIC ACIDS RESEARCH (2017)
Broad role for YBX1 in defining the small noncoding RNA composition of exosomes
Matthew J. Shurtleff et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking
Pornchai Kaewsapsak et al.
ELIFE (2017)
Small Luggage for a Long Journey: Transfer of Vesicle-Enclosed Small RNA in Interspecies Communication
Fabio A. Lefebvre et al.
FRONTIERS IN MICROBIOLOGY (2017)
Obstacles and opportunities in the functional analysis of extracellular vesicle RNA - an ISEV position paper
Bogdan Mateescu et al.
JOURNAL OF EXTRACELLULAR VESICLES (2017)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
Mitochondrial Protein Synthesis Adapts to Influx of Nuclear-Encoded Protein
Ricarda Richter-Dennerlein et al.
CELL (2016)
HuR and GRSF1 modulate the nuclear export and mitochondrial localization of the lncRNA RMRP
Ji Heon Noh et al.
GENES & DEVELOPMENT (2016)
Nucleocytoplasmic Transport of RNAs and RNA-Protein Complexes
Katherine E. Sloan et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
Dysregulation of mRNA Localization and Translation in Genetic Disease
Eric T. Wang et al.
JOURNAL OF NEUROSCIENCE (2016)
Synchronized mitochondrial and cytosolic translation programs
Mary T. Couvillion et al.
NATURE (2016)
Mitonuclear communication in homeostasis and stress
Pedro M. Quiros et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2016)
tRNA base methylation identification and quantification via high-throughput sequencing
Wesley C. Clark et al.
RNA (2016)
PINK1 and Parkin Control Localized Translation of Respiratory Chain Component mRNAs on Mitochondria Outer Membrane
Stephan Gehrke et al.
CELL METABOLISM (2015)
Structure of the human 80S ribosome
Heena Khatter et al.
NATURE (2015)
Efficient and quantitative high-throughput tRNA sequencing
Guanqun Zheng et al.
NATURE METHODS (2015)
ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments
Aaron E. Cozen et al.
NATURE METHODS (2015)
Assessment of small RNA sorting into different extracellular fractions revealed by high-throughput sequencing of breast cell lines
Juan Pablo Tosar et al.
NUCLEIC ACIDS RESEARCH (2015)
Spatially resolved, highly multiplexed RNA profiling in single cells
Kok Hao Chen et al.
SCIENCE (2015)
Lacking alignments? The next-generation sequencing mapper segemehl revisited
Christian Otto et al.
BIOINFORMATICS (2014)
READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data
Konrad U. Foerstner et al.
BIOINFORMATICS (2014)
Import of desired nucleic acid sequences using addressing motif of mitochondrial ribosomal 5S-rRNA for fluorescent in vivo hybridization of mitochondrial DNA and RNA
Jaroslav Zelenka et al.
JOURNAL OF BIOENERGETICS AND BIOMEMBRANES (2014)
Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh
Aurelien Rizk et al.
NATURE PROTOCOLS (2014)
Genomic analysis of RNA localization
J. Matthew Taliaferro et al.
RNA BIOLOGY (2014)
Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling
Christopher C. Williams et al.
SCIENCE (2014)
Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling
Calvin H. Jan et al.
SCIENCE (2014)
Structure of the large ribosomal subunit from human mitochondria
Alan Brown et al.
SCIENCE (2014)
An RNA Degradation Machine Sculpted by Ro Autoantigen and Noncoding RNA
Xinguo Chen et al.
CELL (2013)
GRSF1 Regulates RNA Processing in Mitochondrial RNA Granules
Alexis A. Jourdain et al.
CELL METABOLISM (2013)
Image-based transcriptomics in thousands of single human cells at single-molecule resolution
Nico Battich et al.
NATURE METHODS (2013)
Mitochondrial targeting of recombinant RNAs modulates the level of a heteroplasmic mutation in human mitochondrial DNA associated with Kearns Sayre Syndrome
Caroline Comte et al.
NUCLEIC ACIDS RESEARCH (2013)
Human mitochondrial RNA decay mediated by PNPase-hSuv3 complex takes place in distinct foci
Lukasz S. Borowski et al.
NUCLEIC ACIDS RESEARCH (2013)
Mapping the Small RNA Content of Simian Immunodeficiency Virions (SIV)
Markus Brameier et al.
PLOS ONE (2013)
MicroRNAs and Unusual Small RNAs Discovered in Kaposi's Sarcoma-Associated Herpesvirus Virions
Xianzhi Lin et al.
JOURNAL OF VIROLOGY (2012)
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin et al.
NATURE METHODS (2012)
Host RNAs, including transposons, are encapsidated by a eukaryotic single-stranded RNA virus
Andrew Routh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The Human Mitochondrial Transcriptome
Tim R. Mercer et al.
CELL (2011)
Biological significance of 5S rRNA import into human mitochondria: role of ribosomal protein MRP-L18
Alexandre Smirnov et al.
GENES & DEVELOPMENT (2011)
The evolution and expression of the snaR family of small non-coding RNAs
Andrew M. Parrott et al.
NUCLEIC ACIDS RESEARCH (2011)
Characterization of extracellular circulating microRNA
Andrey Turchinovich et al.
NUCLEIC ACIDS RESEARCH (2011)
Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma
Jason D. Arroyo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Nucleases: diversity of structure, function and mechanism
Wei Yang
QUARTERLY REVIEWS OF BIOPHYSICS (2011)
PNPASE Regulates RNA Import into Mitochondria
Geng Wang et al.
CELL (2010)
Export of microRNAs and microRNA-protective protein by mammalian cells
Kai Wang et al.
NUCLEIC ACIDS RESEARCH (2010)
Selective Uptake of Small RNA Molecules in the Virion of Murine Gammaherpesvirus 68
Anna R. Cliffe et al.
JOURNAL OF VIROLOGY (2009)
The Vienna RNA Websuite
Andreas R. Gruber et al.
NUCLEIC ACIDS RESEARCH (2008)
Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells
Hadi Valadi et al.
NATURE CELL BIOLOGY (2007)
Encapsidation of genomic but not subgenomic Turnip yellow mosaic virus RNA by coat protein provided in trans
Tae-Ju Cho et al.
VIROLOGY (2006)
Mammalian polynucleotide phosphorylase is an intermembrane space RNase that maintains mitochondrial homeostasis
Hsiao-Wen Chen et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
7SL RNA, but not the 54-kd signal recognition particle protein, is an abundant component of both infectious HIV-1 and minimal virus-like particles
AA Onafuwa-Nuga et al.
RNA (2006)
Mitochondrial transcription factor A regulates mtDNA copy number in mammals
MI Ekstrand et al.
HUMAN MOLECULAR GENETICS (2004)
Viral RNAs detected in virions of porcine adenovirus type 3
X Li et al.
VIROLOGY (2004)
A lupus-like syndrome develops in mice lacking the Ro 60-kDa protein, a major lupus autoantigen
DH Xue et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Catalysis by ribonuclease A is limited by the rate of substrate association
C Park et al.
BIOCHEMISTRY (2003)
5 S rRNA and tRNA import into human mitochondria -: Comparison of in vitro requirements
NS Entelis et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
RNAs extracted from herpes simplex virus 1 virions: Apparent selectivity of viral but not cellular RNAs packaged in virions
MT Sciortino et al.
JOURNAL OF VIROLOGY (2001)
The RNase P associated with HeLa cell mitochondria contains an essential RNA component identical in sequence to that of the nuclear RNase P
RS Puranam et al.
MOLECULAR AND CELLULAR BIOLOGY (2001)
Human cytomegalovirus virions differentially incorporate viral and host cell RNA during the assembly process
AE Greijer et al.
JOURNAL OF VIROLOGY (2000)
A subset of viral transcripts packaged within human cytomegalovirus particles
WA Bresnahan et al.
SCIENCE (2000)